GO Enrichment Analysis of Co-expressed Genes with
AT1G07440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 6 | GO:0048564: photosystem I assembly | 7.39E-06 |
| 7 | GO:0071482: cellular response to light stimulus | 9.62E-06 |
| 8 | GO:0009658: chloroplast organization | 1.13E-05 |
| 9 | GO:0009853: photorespiration | 1.20E-05 |
| 10 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.22E-05 |
| 11 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.76E-05 |
| 12 | GO:0009767: photosynthetic electron transport chain | 3.08E-05 |
| 13 | GO:0019253: reductive pentose-phosphate cycle | 3.57E-05 |
| 14 | GO:0042631: cellular response to water deprivation | 1.07E-04 |
| 15 | GO:0006753: nucleoside phosphate metabolic process | 1.23E-04 |
| 16 | GO:2001141: regulation of RNA biosynthetic process | 1.83E-04 |
| 17 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.83E-04 |
| 18 | GO:0006020: inositol metabolic process | 1.83E-04 |
| 19 | GO:0006021: inositol biosynthetic process | 2.48E-04 |
| 20 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.48E-04 |
| 21 | GO:0045727: positive regulation of translation | 2.48E-04 |
| 22 | GO:0008295: spermidine biosynthetic process | 2.48E-04 |
| 23 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 3.92E-04 |
| 24 | GO:0016554: cytidine to uridine editing | 3.92E-04 |
| 25 | GO:0046855: inositol phosphate dephosphorylation | 3.92E-04 |
| 26 | GO:0009854: oxidative photosynthetic carbon pathway | 4.69E-04 |
| 27 | GO:0015937: coenzyme A biosynthetic process | 5.49E-04 |
| 28 | GO:0010196: nonphotochemical quenching | 5.49E-04 |
| 29 | GO:0009704: de-etiolation | 6.32E-04 |
| 30 | GO:0006810: transport | 6.45E-04 |
| 31 | GO:0032544: plastid translation | 7.18E-04 |
| 32 | GO:0006096: glycolytic process | 7.24E-04 |
| 33 | GO:0010206: photosystem II repair | 8.07E-04 |
| 34 | GO:0010205: photoinhibition | 8.99E-04 |
| 35 | GO:1900865: chloroplast RNA modification | 8.99E-04 |
| 36 | GO:0006352: DNA-templated transcription, initiation | 1.09E-03 |
| 37 | GO:0000272: polysaccharide catabolic process | 1.09E-03 |
| 38 | GO:0006790: sulfur compound metabolic process | 1.19E-03 |
| 39 | GO:0046854: phosphatidylinositol phosphorylation | 1.50E-03 |
| 40 | GO:0042343: indole glucosinolate metabolic process | 1.50E-03 |
| 41 | GO:0098542: defense response to other organism | 1.97E-03 |
| 42 | GO:0016226: iron-sulfur cluster assembly | 2.09E-03 |
| 43 | GO:0080167: response to karrikin | 2.74E-03 |
| 44 | GO:0015979: photosynthesis | 3.12E-03 |
| 45 | GO:0009409: response to cold | 3.41E-03 |
| 46 | GO:0030163: protein catabolic process | 3.45E-03 |
| 47 | GO:0010027: thylakoid membrane organization | 4.06E-03 |
| 48 | GO:0055114: oxidation-reduction process | 6.65E-03 |
| 49 | GO:0009611: response to wounding | 7.28E-03 |
| 50 | GO:0006364: rRNA processing | 8.40E-03 |
| 51 | GO:0006417: regulation of translation | 9.01E-03 |
| 52 | GO:0006508: proteolysis | 9.62E-03 |
| 53 | GO:0042742: defense response to bacterium | 1.45E-02 |
| 54 | GO:0007623: circadian rhythm | 1.58E-02 |
| 55 | GO:0010468: regulation of gene expression | 1.79E-02 |
| 56 | GO:0046686: response to cadmium ion | 2.26E-02 |
| 57 | GO:0044550: secondary metabolite biosynthetic process | 2.67E-02 |
| 58 | GO:0007275: multicellular organism development | 2.85E-02 |
| 59 | GO:0032259: methylation | 3.22E-02 |
| 60 | GO:0048364: root development | 3.42E-02 |
| 61 | GO:0009735: response to cytokinin | 4.68E-02 |
| 62 | GO:0009416: response to light stimulus | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 2 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 3 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 6 | GO:0004618: phosphoglycerate kinase activity | 5.42E-08 |
| 7 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.94E-06 |
| 8 | GO:0004222: metalloendopeptidase activity | 9.47E-06 |
| 9 | GO:0010945: CoA pyrophosphatase activity | 2.76E-05 |
| 10 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 2.76E-05 |
| 11 | GO:0008266: poly(U) RNA binding | 3.57E-05 |
| 12 | GO:0010297: heteropolysaccharide binding | 7.01E-05 |
| 13 | GO:0004766: spermidine synthase activity | 7.01E-05 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 7.01E-05 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 7.01E-05 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 7.01E-05 |
| 17 | GO:0070402: NADPH binding | 1.23E-04 |
| 18 | GO:0004324: ferredoxin-NADP+ reductase activity | 1.23E-04 |
| 19 | GO:0032947: protein complex scaffold | 1.23E-04 |
| 20 | GO:0048038: quinone binding | 1.46E-04 |
| 21 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.83E-04 |
| 22 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.83E-04 |
| 23 | GO:0001053: plastid sigma factor activity | 2.48E-04 |
| 24 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.48E-04 |
| 25 | GO:0008453: alanine-glyoxylate transaminase activity | 2.48E-04 |
| 26 | GO:0016987: sigma factor activity | 2.48E-04 |
| 27 | GO:0003959: NADPH dehydrogenase activity | 3.18E-04 |
| 28 | GO:0000210: NAD+ diphosphatase activity | 3.92E-04 |
| 29 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.69E-04 |
| 30 | GO:0004033: aldo-keto reductase (NADP) activity | 6.32E-04 |
| 31 | GO:0031072: heat shock protein binding | 1.29E-03 |
| 32 | GO:0051536: iron-sulfur cluster binding | 1.73E-03 |
| 33 | GO:0005528: FK506 binding | 1.73E-03 |
| 34 | GO:0004176: ATP-dependent peptidase activity | 1.97E-03 |
| 35 | GO:0022891: substrate-specific transmembrane transporter activity | 2.22E-03 |
| 36 | GO:0003756: protein disulfide isomerase activity | 2.35E-03 |
| 37 | GO:0050662: coenzyme binding | 2.88E-03 |
| 38 | GO:0008237: metallopeptidase activity | 3.75E-03 |
| 39 | GO:0016168: chlorophyll binding | 4.22E-03 |
| 40 | GO:0016787: hydrolase activity | 6.09E-03 |
| 41 | GO:0005198: structural molecule activity | 7.40E-03 |
| 42 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.59E-03 |
| 43 | GO:0051287: NAD binding | 7.79E-03 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.40E-03 |
| 45 | GO:0046872: metal ion binding | 9.39E-03 |
| 46 | GO:0022857: transmembrane transporter activity | 1.03E-02 |
| 47 | GO:0051082: unfolded protein binding | 1.07E-02 |
| 48 | GO:0016746: transferase activity, transferring acyl groups | 1.10E-02 |
| 49 | GO:0019843: rRNA binding | 1.26E-02 |
| 50 | GO:0005506: iron ion binding | 1.42E-02 |
| 51 | GO:0046910: pectinesterase inhibitor activity | 1.51E-02 |
| 52 | GO:0016491: oxidoreductase activity | 1.91E-02 |
| 53 | GO:0008168: methyltransferase activity | 2.10E-02 |
| 54 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.02E-02 |
| 55 | GO:0003723: RNA binding | 3.12E-02 |
| 56 | GO:0004519: endonuclease activity | 3.52E-02 |
| 57 | GO:0016887: ATPase activity | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.73E-19 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.75E-09 |
| 4 | GO:0009579: thylakoid | 1.70E-08 |
| 5 | GO:0009570: chloroplast stroma | 4.84E-07 |
| 6 | GO:0009534: chloroplast thylakoid | 5.09E-07 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.22E-05 |
| 8 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.76E-05 |
| 9 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 7.01E-05 |
| 10 | GO:0009941: chloroplast envelope | 1.49E-04 |
| 11 | GO:0005960: glycine cleavage complex | 1.83E-04 |
| 12 | GO:0010319: stromule | 1.91E-04 |
| 13 | GO:0009517: PSII associated light-harvesting complex II | 2.48E-04 |
| 14 | GO:0048046: apoplast | 5.10E-04 |
| 15 | GO:0009706: chloroplast inner membrane | 8.63E-04 |
| 16 | GO:0010287: plastoglobule | 1.01E-03 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 1.07E-03 |
| 18 | GO:0005777: peroxisome | 1.14E-03 |
| 19 | GO:0009508: plastid chromosome | 1.29E-03 |
| 20 | GO:0030095: chloroplast photosystem II | 1.40E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 1.85E-03 |
| 22 | GO:0009523: photosystem II | 3.02E-03 |
| 23 | GO:0019898: extrinsic component of membrane | 3.02E-03 |
| 24 | GO:0005778: peroxisomal membrane | 3.75E-03 |
| 25 | GO:0009295: nucleoid | 3.75E-03 |
| 26 | GO:0031977: thylakoid lumen | 6.45E-03 |
| 27 | GO:0016020: membrane | 6.73E-03 |
| 28 | GO:0009536: plastid | 1.77E-02 |
| 29 | GO:0031969: chloroplast membrane | 2.51E-02 |