co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G06190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0010027: thylakoid membrane organization	1.98E-08
9	GO:0015995: chlorophyll biosynthetic process	3.40E-08
10	GO:0009658: chloroplast organization	1.61E-07
11	GO:0006412: translation	1.04E-06
12	GO:0032544: plastid translation	4.91E-06
13	GO:0090391: granum assembly	7.85E-06
14	GO:0015979: photosynthesis	7.34E-05
15	GO:0010196: nonphotochemical quenching	1.42E-04
16	GO:0043489: RNA stabilization	2.13E-04
17	GO:0042759: long-chain fatty acid biosynthetic process	2.13E-04
18	GO:0034337: RNA folding	2.13E-04
19	GO:0042254: ribosome biogenesis	2.50E-04
20	GO:0000373: Group II intron splicing	2.74E-04
21	GO:0009735: response to cytokinin	3.98E-04
22	GO:0034755: iron ion transmembrane transport	4.76E-04
23	GO:0001736: establishment of planar polarity	4.76E-04
24	GO:0006568: tryptophan metabolic process	4.76E-04
25	GO:0016024: CDP-diacylglycerol biosynthetic process	5.07E-04
26	GO:0010207: photosystem II assembly	6.47E-04
27	GO:0009451: RNA modification	7.17E-04
28	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.74E-04
29	GO:0046168: glycerol-3-phosphate catabolic process	7.74E-04
30	GO:0015675: nickel cation transport	7.74E-04
31	GO:0031048: chromatin silencing by small RNA	1.10E-03
32	GO:0010088: phloem development	1.10E-03
33	GO:1901332: negative regulation of lateral root development	1.10E-03
34	GO:0006986: response to unfolded protein	1.10E-03
35	GO:2001141: regulation of RNA biosynthetic process	1.10E-03
36	GO:0009413: response to flooding	1.10E-03
37	GO:0051085: chaperone mediated protein folding requiring cofactor	1.10E-03
38	GO:0019048: modulation by virus of host morphology or physiology	1.10E-03
39	GO:0006072: glycerol-3-phosphate metabolic process	1.10E-03
40	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.27E-03
41	GO:0009306: protein secretion	1.38E-03
42	GO:0051567: histone H3-K9 methylation	1.47E-03
43	GO:0042335: cuticle development	1.61E-03
44	GO:0006564: L-serine biosynthetic process	1.87E-03
45	GO:0010236: plastoquinone biosynthetic process	1.87E-03
46	GO:0045038: protein import into chloroplast thylakoid membrane	1.87E-03
47	GO:0007094: mitotic spindle assembly checkpoint	1.87E-03
48	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.94E-03
49	GO:0006655: phosphatidylglycerol biosynthetic process	2.31E-03
50	GO:0016458: gene silencing	2.31E-03
51	GO:0042549: photosystem II stabilization	2.31E-03
52	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.31E-03
53	GO:0000470: maturation of LSU-rRNA	2.31E-03
54	GO:0009828: plant-type cell wall loosening	2.58E-03
55	GO:1901259: chloroplast rRNA processing	2.77E-03
56	GO:0042372: phylloquinone biosynthetic process	2.77E-03
57	GO:0017148: negative regulation of translation	2.77E-03
58	GO:0009790: embryo development	3.19E-03
59	GO:0009772: photosynthetic electron transport in photosystem II	3.26E-03
60	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.26E-03
61	GO:0009793: embryo development ending in seed dormancy	3.35E-03
62	GO:0042255: ribosome assembly	3.78E-03
63	GO:0006353: DNA-templated transcription, termination	3.78E-03
64	GO:0006605: protein targeting	3.78E-03
65	GO:0048564: photosystem I assembly	3.78E-03
66	GO:0045292: mRNA cis splicing, via spliceosome	3.78E-03
67	GO:0010311: lateral root formation	4.20E-03
68	GO:0071482: cellular response to light stimulus	4.33E-03
69	GO:0010205: photoinhibition	5.50E-03
70	GO:0006779: porphyrin-containing compound biosynthetic process	5.50E-03
71	GO:0030001: metal ion transport	5.77E-03
72	GO:0030422: production of siRNA involved in RNA interference	6.12E-03
73	GO:0048829: root cap development	6.12E-03
74	GO:0006949: syncytium formation	6.12E-03
75	GO:0006782: protoporphyrinogen IX biosynthetic process	6.12E-03
76	GO:0010114: response to red light	6.53E-03
77	GO:0006879: cellular iron ion homeostasis	6.77E-03
78	GO:0006352: DNA-templated transcription, initiation	6.77E-03
79	GO:0048765: root hair cell differentiation	6.77E-03
80	GO:2000012: regulation of auxin polar transport	8.13E-03
81	GO:0009664: plant-type cell wall organization	8.20E-03
82	GO:0006364: rRNA processing	8.80E-03
83	GO:0010143: cutin biosynthetic process	8.84E-03
84	GO:0010025: wax biosynthetic process	1.03E-02
85	GO:0006636: unsaturated fatty acid biosynthetic process	1.03E-02
86	GO:0051017: actin filament bundle assembly	1.11E-02
87	GO:0000027: ribosomal large subunit assembly	1.11E-02
88	GO:0009624: response to nematode	1.26E-02
89	GO:0051321: meiotic cell cycle	1.27E-02
90	GO:0003333: amino acid transmembrane transport	1.27E-02
91	GO:0006306: DNA methylation	1.27E-02
92	GO:0009742: brassinosteroid mediated signaling pathway	1.33E-02
93	GO:0030245: cellulose catabolic process	1.36E-02
94	GO:0016042: lipid catabolic process	1.43E-02
95	GO:0080022: primary root development	1.72E-02
96	GO:0008033: tRNA processing	1.72E-02
97	GO:0000413: protein peptidyl-prolyl isomerization	1.72E-02
98	GO:0009958: positive gravitropism	1.81E-02
99	GO:0006342: chromatin silencing	1.81E-02
100	GO:0007059: chromosome segregation	1.91E-02
101	GO:0000302: response to reactive oxygen species	2.10E-02
102	GO:0045490: pectin catabolic process	2.18E-02
103	GO:0016032: viral process	2.20E-02
104	GO:0032502: developmental process	2.20E-02
105	GO:0009739: response to gibberellin	2.44E-02
106	GO:0007166: cell surface receptor signaling pathway	2.49E-02
107	GO:0051607: defense response to virus	2.62E-02
108	GO:0009816: defense response to bacterium, incompatible interaction	2.84E-02
109	GO:0009627: systemic acquired resistance	2.95E-02
110	GO:0009826: unidimensional cell growth	3.24E-02
111	GO:0009817: defense response to fungus, incompatible interaction	3.30E-02
112	GO:0009631: cold acclimation	3.66E-02
113	GO:0007568: aging	3.66E-02
114	GO:0006865: amino acid transport	3.78E-02
115	GO:0045087: innate immune response	3.91E-02
116	GO:0009637: response to blue light	3.91E-02
117	GO:0034599: cellular response to oxidative stress	4.03E-02
118	GO:0006457: protein folding	4.19E-02
119	GO:0005975: carbohydrate metabolic process	4.24E-02
120	GO:0006839: mitochondrial transport	4.29E-02
121	GO:0009926: auxin polar transport	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0019843: rRNA binding	6.52E-15
9	GO:0016851: magnesium chelatase activity	5.93E-08
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.81E-07
11	GO:0005528: FK506 binding	1.35E-06
12	GO:0003735: structural constituent of ribosome	1.35E-06
13	GO:0043023: ribosomal large subunit binding	1.79E-05
14	GO:0003723: RNA binding	1.54E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	2.13E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.13E-04
17	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.13E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.13E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.13E-04
20	GO:0016788: hydrolase activity, acting on ester bonds	2.50E-04
21	GO:0016630: protochlorophyllide reductase activity	4.76E-04
22	GO:0015099: nickel cation transmembrane transporter activity	4.76E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	4.76E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.76E-04
25	GO:0008266: poly(U) RNA binding	6.47E-04
26	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	7.74E-04
27	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.74E-04
28	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.74E-04
29	GO:0035197: siRNA binding	1.10E-03
30	GO:0030570: pectate lyase activity	1.27E-03
31	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.47E-03
32	GO:0004659: prenyltransferase activity	1.47E-03
33	GO:0001053: plastid sigma factor activity	1.47E-03
34	GO:0010011: auxin binding	1.47E-03
35	GO:0016987: sigma factor activity	1.47E-03
36	GO:0010328: auxin influx transmembrane transporter activity	1.47E-03
37	GO:0004040: amidase activity	1.87E-03
38	GO:0003959: NADPH dehydrogenase activity	1.87E-03
39	GO:0052689: carboxylic ester hydrolase activity	2.15E-03
40	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.31E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.31E-03
42	GO:0004130: cytochrome-c peroxidase activity	2.31E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.23E-03
44	GO:0052747: sinapyl alcohol dehydrogenase activity	3.78E-03
45	GO:0008312: 7S RNA binding	3.78E-03
46	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.00E-03
47	GO:0047617: acyl-CoA hydrolase activity	5.50E-03
48	GO:0005381: iron ion transmembrane transporter activity	5.50E-03
49	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.44E-03
50	GO:0004521: endoribonuclease activity	7.44E-03
51	GO:0051287: NAD binding	7.91E-03
52	GO:0008081: phosphoric diester hydrolase activity	8.13E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.84E-03
54	GO:0051087: chaperone binding	1.19E-02
55	GO:0016746: transferase activity, transferring acyl groups	1.29E-02
56	GO:0003729: mRNA binding	1.36E-02
57	GO:0008810: cellulase activity	1.45E-02
58	GO:0003727: single-stranded RNA binding	1.53E-02
59	GO:0004519: endonuclease activity	1.65E-02
60	GO:0016829: lyase activity	1.71E-02
61	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.81E-02
62	GO:0008080: N-acetyltransferase activity	1.81E-02
63	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.03E-02
64	GO:0004518: nuclease activity	2.20E-02
65	GO:0051015: actin filament binding	2.31E-02
66	GO:0016791: phosphatase activity	2.41E-02
67	GO:0008483: transaminase activity	2.52E-02
68	GO:0016597: amino acid binding	2.62E-02
69	GO:0008236: serine-type peptidase activity	3.18E-02
70	GO:0016491: oxidoreductase activity	3.45E-02
71	GO:0005507: copper ion binding	4.71E-02
72	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009570: chloroplast stroma	3.00E-29
3	GO:0009507: chloroplast	2.70E-27
4	GO:0009941: chloroplast envelope	8.87E-21
5	GO:0009579: thylakoid	1.38E-15
6	GO:0009543: chloroplast thylakoid lumen	8.82E-12
7	GO:0009535: chloroplast thylakoid membrane	5.07E-11
8	GO:0031977: thylakoid lumen	1.34E-10
9	GO:0009534: chloroplast thylakoid	1.40E-10
10	GO:0005840: ribosome	3.59E-10
11	GO:0010007: magnesium chelatase complex	1.22E-08
12	GO:0005618: cell wall	1.42E-04
13	GO:0009547: plastid ribosome	2.13E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.13E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	4.76E-04
16	GO:0000311: plastid large ribosomal subunit	5.07E-04
17	GO:0046658: anchored component of plasma membrane	1.05E-03
18	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.10E-03
19	GO:0005719: nuclear euchromatin	1.10E-03
20	GO:0005828: kinetochore microtubule	1.47E-03
21	GO:0031969: chloroplast membrane	1.85E-03
22	GO:0000776: kinetochore	1.87E-03
23	GO:0009706: chloroplast inner membrane	1.97E-03
24	GO:0000793: condensed chromosome	2.31E-03
25	GO:0000777: condensed chromosome kinetochore	2.77E-03
26	GO:0009536: plastid	2.90E-03
27	GO:0009505: plant-type cell wall	3.03E-03
28	GO:0030529: intracellular ribonucleoprotein complex	3.07E-03
29	GO:0009986: cell surface	3.26E-03
30	GO:0000794: condensed nuclear chromosome	3.26E-03
31	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.33E-03
32	GO:0005876: spindle microtubule	5.50E-03
33	GO:0015030: Cajal body	5.50E-03
34	GO:0090404: pollen tube tip	6.77E-03
35	GO:0032040: small-subunit processome	7.44E-03
36	GO:0005578: proteinaceous extracellular matrix	8.13E-03
37	GO:0030095: chloroplast photosystem II	8.84E-03
38	GO:0016020: membrane	1.17E-02
39	GO:0042651: thylakoid membrane	1.19E-02
40	GO:0009654: photosystem II oxygen evolving complex	1.19E-02
41	GO:0015629: actin cytoskeleton	1.45E-02
42	GO:0005576: extracellular region	1.68E-02
43	GO:0043231: intracellular membrane-bounded organelle	1.68E-02
44	GO:0009523: photosystem II	2.00E-02
45	GO:0019898: extrinsic component of membrane	2.00E-02
46	GO:0048046: apoplast	2.38E-02
47	GO:0009295: nucleoid	2.52E-02
48	GO:0022625: cytosolic large ribosomal subunit	4.38E-02