co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	5.69E-08
4	GO:0046620: regulation of organ growth	1.10E-06
5	GO:0080170: hydrogen peroxide transmembrane transport	8.07E-06
6	GO:0009733: response to auxin	2.40E-05
7	GO:0009926: auxin polar transport	2.88E-05
8	GO:0034220: ion transmembrane transport	5.20E-05
9	GO:0009734: auxin-activated signaling pathway	6.63E-05
10	GO:0010196: nonphotochemical quenching	7.02E-05
11	GO:0080051: cutin transport	1.35E-04
12	GO:0033481: galacturonate biosynthetic process	1.35E-04
13	GO:0006106: fumarate metabolic process	1.35E-04
14	GO:0090548: response to nitrate starvation	1.35E-04
15	GO:0071588: hydrogen peroxide mediated signaling pathway	1.35E-04
16	GO:0015979: photosynthesis	1.35E-04
17	GO:1902025: nitrate import	1.35E-04
18	GO:0016042: lipid catabolic process	2.13E-04
19	GO:0001736: establishment of planar polarity	3.11E-04
20	GO:0015908: fatty acid transport	3.11E-04
21	GO:0010115: regulation of abscisic acid biosynthetic process	3.11E-04
22	GO:0010143: cutin biosynthetic process	3.49E-04
23	GO:0006833: water transport	4.36E-04
24	GO:0015714: phosphoenolpyruvate transport	5.13E-04
25	GO:0090391: granum assembly	5.13E-04
26	GO:0006518: peptide metabolic process	5.13E-04
27	GO:0009651: response to salt stress	5.53E-04
28	GO:0009737: response to abscisic acid	6.79E-04
29	GO:0071484: cellular response to light intensity	7.34E-04
30	GO:0009650: UV protection	7.34E-04
31	GO:1901332: negative regulation of lateral root development	7.34E-04
32	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.44E-04
33	GO:0042335: cuticle development	8.75E-04
34	GO:0010222: stem vascular tissue pattern formation	9.73E-04
35	GO:0010109: regulation of photosynthesis	9.73E-04
36	GO:0045727: positive regulation of translation	9.73E-04
37	GO:0015713: phosphoglycerate transport	9.73E-04
38	GO:0030104: water homeostasis	9.73E-04
39	GO:0006810: transport	1.16E-03
40	GO:0006461: protein complex assembly	1.23E-03
41	GO:0030308: negative regulation of cell growth	1.23E-03
42	GO:0016120: carotene biosynthetic process	1.23E-03
43	GO:0006561: proline biosynthetic process	1.51E-03
44	GO:0009913: epidermal cell differentiation	1.51E-03
45	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.51E-03
46	GO:0010027: thylakoid membrane organization	1.64E-03
47	GO:0045490: pectin catabolic process	1.76E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	1.81E-03
49	GO:0042128: nitrate assimilation	1.83E-03
50	GO:0015995: chlorophyll biosynthetic process	1.93E-03
51	GO:0010444: guard mother cell differentiation	2.12E-03
52	GO:0009395: phospholipid catabolic process	2.12E-03
53	GO:0009772: photosynthetic electron transport in photosystem II	2.12E-03
54	GO:0050829: defense response to Gram-negative bacterium	2.12E-03
55	GO:1900057: positive regulation of leaf senescence	2.12E-03
56	GO:0010311: lateral root formation	2.24E-03
57	GO:0006605: protein targeting	2.46E-03
58	GO:0055075: potassium ion homeostasis	2.46E-03
59	GO:0008610: lipid biosynthetic process	2.46E-03
60	GO:0009631: cold acclimation	2.46E-03
61	GO:0030091: protein repair	2.46E-03
62	GO:0009735: response to cytokinin	2.63E-03
63	GO:0032544: plastid translation	2.81E-03
64	GO:0009657: plastid organization	2.81E-03
65	GO:0010206: photosystem II repair	3.17E-03
66	GO:0034765: regulation of ion transmembrane transport	3.17E-03
67	GO:0010205: photoinhibition	3.55E-03
68	GO:0009688: abscisic acid biosynthetic process	3.95E-03
69	GO:0048829: root cap development	3.95E-03
70	GO:0009750: response to fructose	4.36E-03
71	GO:0018119: peptidyl-cysteine S-nitrosylation	4.36E-03
72	GO:0048765: root hair cell differentiation	4.36E-03
73	GO:0000038: very long-chain fatty acid metabolic process	4.36E-03
74	GO:0016024: CDP-diacylglycerol biosynthetic process	4.79E-03
75	GO:0015706: nitrate transport	4.79E-03
76	GO:0006857: oligopeptide transport	4.99E-03
77	GO:0010628: positive regulation of gene expression	5.22E-03
78	GO:0006108: malate metabolic process	5.22E-03
79	GO:0009718: anthocyanin-containing compound biosynthetic process	5.22E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	5.22E-03
81	GO:0010102: lateral root morphogenesis	5.22E-03
82	GO:0006869: lipid transport	5.67E-03
83	GO:0010207: photosystem II assembly	5.68E-03
84	GO:0071732: cellular response to nitric oxide	6.14E-03
85	GO:0010030: positive regulation of seed germination	6.14E-03
86	GO:0009225: nucleotide-sugar metabolic process	6.14E-03
87	GO:0010167: response to nitrate	6.14E-03
88	GO:0006636: unsaturated fatty acid biosynthetic process	6.62E-03
89	GO:0009624: response to nematode	6.62E-03
90	GO:0010025: wax biosynthetic process	6.62E-03
91	GO:0009742: brassinosteroid mediated signaling pathway	7.02E-03
92	GO:0019953: sexual reproduction	7.62E-03
93	GO:0007017: microtubule-based process	7.62E-03
94	GO:0003333: amino acid transmembrane transport	8.14E-03
95	GO:0009269: response to desiccation	8.14E-03
96	GO:0031408: oxylipin biosynthetic process	8.14E-03
97	GO:0009414: response to water deprivation	8.49E-03
98	GO:0030245: cellulose catabolic process	8.67E-03
99	GO:0009411: response to UV	9.21E-03
100	GO:0071369: cellular response to ethylene stimulus	9.21E-03
101	GO:0042744: hydrogen peroxide catabolic process	9.44E-03
102	GO:0042127: regulation of cell proliferation	9.77E-03
103	GO:0009306: protein secretion	9.77E-03
104	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.03E-02
105	GO:0006633: fatty acid biosynthetic process	1.04E-02
106	GO:0040008: regulation of growth	1.09E-02
107	GO:0042631: cellular response to water deprivation	1.09E-02
108	GO:0042391: regulation of membrane potential	1.09E-02
109	GO:0010182: sugar mediated signaling pathway	1.15E-02
110	GO:0009741: response to brassinosteroid	1.15E-02
111	GO:0009958: positive gravitropism	1.15E-02
112	GO:0015986: ATP synthesis coupled proton transport	1.21E-02
113	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.34E-02
114	GO:0071554: cell wall organization or biogenesis	1.34E-02
115	GO:0000302: response to reactive oxygen species	1.34E-02
116	GO:0009416: response to light stimulus	1.36E-02
117	GO:0009409: response to cold	1.39E-02
118	GO:0009630: gravitropism	1.40E-02
119	GO:0009611: response to wounding	1.40E-02
120	GO:0071281: cellular response to iron ion	1.46E-02
121	GO:0071805: potassium ion transmembrane transport	1.60E-02
122	GO:0045893: positive regulation of transcription, DNA-templated	1.63E-02
123	GO:0048573: photoperiodism, flowering	1.95E-02
124	GO:0080167: response to karrikin	2.21E-02
125	GO:0009407: toxin catabolic process	2.24E-02
126	GO:0006865: amino acid transport	2.40E-02
127	GO:0009637: response to blue light	2.48E-02
128	GO:0034599: cellular response to oxidative stress	2.56E-02
129	GO:0006099: tricarboxylic acid cycle	2.56E-02
130	GO:0007165: signal transduction	2.64E-02
131	GO:0009636: response to toxic substance	3.23E-02
132	GO:0006855: drug transmembrane transport	3.31E-02
133	GO:0009753: response to jasmonic acid	3.49E-02
134	GO:0006364: rRNA processing	3.67E-02
135	GO:0006096: glycolytic process	4.13E-02
136	GO:0048316: seed development	4.23E-02
137	GO:0042545: cell wall modification	4.62E-02
138	GO:0051726: regulation of cell cycle	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
5	GO:0052689: carboxylic ester hydrolase activity	1.26E-04
6	GO:0019210: kinase inhibitor activity	1.35E-04
7	GO:0015245: fatty acid transporter activity	1.35E-04
8	GO:0004333: fumarate hydratase activity	1.35E-04
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.35E-04
10	GO:0015250: water channel activity	1.40E-04
11	GO:0015293: symporter activity	4.56E-04
12	GO:0005528: FK506 binding	4.84E-04
13	GO:0050734: hydroxycinnamoyltransferase activity	5.13E-04
14	GO:0016788: hydrolase activity, acting on ester bonds	5.24E-04
15	GO:0030570: pectate lyase activity	6.94E-04
16	GO:0016851: magnesium chelatase activity	7.34E-04
17	GO:0016746: transferase activity, transferring acyl groups	9.24E-04
18	GO:0042277: peptide binding	9.73E-04
19	GO:0015120: phosphoglycerate transmembrane transporter activity	9.73E-04
20	GO:0010011: auxin binding	9.73E-04
21	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	9.73E-04
22	GO:0010328: auxin influx transmembrane transporter activity	9.73E-04
23	GO:0052793: pectin acetylesterase activity	9.73E-04
24	GO:0050378: UDP-glucuronate 4-epimerase activity	9.73E-04
25	GO:0016688: L-ascorbate peroxidase activity	1.51E-03
26	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.51E-03
27	GO:0004629: phospholipase C activity	1.51E-03
28	GO:0004130: cytochrome-c peroxidase activity	1.51E-03
29	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.51E-03
30	GO:0004435: phosphatidylinositol phospholipase C activity	1.81E-03
31	GO:0005242: inward rectifier potassium channel activity	1.81E-03
32	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.81E-03
33	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.38E-03
34	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.81E-03
35	GO:0015112: nitrate transmembrane transporter activity	3.55E-03
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.04E-03
37	GO:0004022: alcohol dehydrogenase (NAD) activity	5.22E-03
38	GO:0004565: beta-galactosidase activity	5.22E-03
39	GO:0008266: poly(U) RNA binding	5.68E-03
40	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.62E-03
41	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.62E-03
42	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.62E-03
43	GO:0004176: ATP-dependent peptidase activity	8.14E-03
44	GO:0016829: lyase activity	8.97E-03
45	GO:0008810: cellulase activity	9.21E-03
46	GO:0005215: transporter activity	1.03E-02
47	GO:0005249: voltage-gated potassium channel activity	1.09E-02
48	GO:0030551: cyclic nucleotide binding	1.09E-02
49	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.15E-02
50	GO:0050662: coenzyme binding	1.21E-02
51	GO:0042802: identical protein binding	1.46E-02
52	GO:0016791: phosphatase activity	1.53E-02
53	GO:0005200: structural constituent of cytoskeleton	1.60E-02
54	GO:0016413: O-acetyltransferase activity	1.66E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.09E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.24E-02
57	GO:0004222: metalloendopeptidase activity	2.24E-02
58	GO:0003993: acid phosphatase activity	2.56E-02
59	GO:0004871: signal transducer activity	2.77E-02
60	GO:0004364: glutathione transferase activity	2.88E-02
61	GO:0003824: catalytic activity	3.71E-02
62	GO:0003690: double-stranded DNA binding	3.76E-02
63	GO:0016298: lipase activity	3.76E-02
64	GO:0015171: amino acid transmembrane transporter activity	3.95E-02
65	GO:0031625: ubiquitin protein ligase binding	3.95E-02
66	GO:0045330: aspartyl esterase activity	3.95E-02
67	GO:0045735: nutrient reservoir activity	4.13E-02
68	GO:0008289: lipid binding	4.51E-02
69	GO:0030599: pectinesterase activity	4.52E-02
70	GO:0022857: transmembrane transporter activity	4.52E-02
71	GO:0016491: oxidoreductase activity	4.64E-02
72	GO:0005515: protein binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	4.81E-11
3	GO:0009535: chloroplast thylakoid membrane	6.75E-10
4	GO:0009579: thylakoid	1.36E-08
5	GO:0009543: chloroplast thylakoid lumen	1.83E-08
6	GO:0030095: chloroplast photosystem II	1.47E-07
7	GO:0009507: chloroplast	8.65E-07
8	GO:0005886: plasma membrane	3.29E-06
9	GO:0009515: granal stacked thylakoid	1.35E-04
10	GO:0045239: tricarboxylic acid cycle enzyme complex	1.35E-04
11	GO:0043674: columella	1.35E-04
12	GO:0008180: COP9 signalosome	1.40E-04
13	GO:0030093: chloroplast photosystem I	3.11E-04
14	GO:0031977: thylakoid lumen	3.53E-04
15	GO:0010007: magnesium chelatase complex	5.13E-04
16	GO:0009897: external side of plasma membrane	5.13E-04
17	GO:0015630: microtubule cytoskeleton	7.34E-04
18	GO:0009523: photosystem II	1.08E-03
19	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.51E-03
20	GO:0005887: integral component of plasma membrane	2.01E-03
21	GO:0009986: cell surface	2.12E-03
22	GO:0009533: chloroplast stromal thylakoid	2.12E-03
23	GO:0042807: central vacuole	2.12E-03
24	GO:0016021: integral component of membrane	2.13E-03
25	GO:0019005: SCF ubiquitin ligase complex	2.14E-03
26	GO:0005618: cell wall	2.63E-03
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.17E-03
28	GO:0009941: chloroplast envelope	3.82E-03
29	GO:0031969: chloroplast membrane	4.01E-03
30	GO:0000502: proteasome complex	4.66E-03
31	GO:0009508: plastid chromosome	5.22E-03
32	GO:0048046: apoplast	6.89E-03
33	GO:0005768: endosome	7.50E-03
34	GO:0009654: photosystem II oxygen evolving complex	7.62E-03
35	GO:0010287: plastoglobule	7.85E-03
36	GO:0009505: plant-type cell wall	1.24E-02
37	GO:0019898: extrinsic component of membrane	1.27E-02
38	GO:0032580: Golgi cisterna membrane	1.53E-02
39	GO:0010319: stromule	1.60E-02
40	GO:0009295: nucleoid	1.60E-02
41	GO:0016020: membrane	2.11E-02
42	GO:0009570: chloroplast stroma	2.14E-02
43	GO:0031225: anchored component of membrane	2.39E-02
44	GO:0005802: trans-Golgi network	2.47E-02
45	GO:0005576: extracellular region	3.81E-02