Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G05190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0015805: S-adenosyl-L-methionine transport0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0042493: response to drug0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0033494: ferulate metabolic process0.00E+00
13GO:0061635: regulation of protein complex stability0.00E+00
14GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
15GO:0006412: translation9.37E-18
16GO:0032544: plastid translation1.08E-13
17GO:0015979: photosynthesis3.87E-12
18GO:0042254: ribosome biogenesis1.44E-10
19GO:0009658: chloroplast organization2.15E-09
20GO:0009735: response to cytokinin6.29E-08
21GO:0010027: thylakoid membrane organization3.25E-07
22GO:0015976: carbon utilization8.68E-07
23GO:0015995: chlorophyll biosynthetic process1.19E-05
24GO:2000122: negative regulation of stomatal complex development9.22E-05
25GO:0010037: response to carbon dioxide9.22E-05
26GO:0045454: cell redox homeostasis1.27E-04
27GO:0010190: cytochrome b6f complex assembly2.05E-04
28GO:0010196: nonphotochemical quenching3.58E-04
29GO:0009443: pyridoxal 5'-phosphate salvage3.92E-04
30GO:0043489: RNA stabilization3.92E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process3.92E-04
32GO:1904964: positive regulation of phytol biosynthetic process3.92E-04
33GO:0042371: vitamin K biosynthetic process3.92E-04
34GO:0071588: hydrogen peroxide mediated signaling pathway3.92E-04
35GO:0042742: defense response to bacterium3.98E-04
36GO:0000413: protein peptidyl-prolyl isomerization4.45E-04
37GO:0009657: plastid organization5.48E-04
38GO:0071482: cellular response to light stimulus5.48E-04
39GO:0006779: porphyrin-containing compound biosynthetic process7.75E-04
40GO:0034755: iron ion transmembrane transport8.49E-04
41GO:0044208: 'de novo' AMP biosynthetic process8.49E-04
42GO:0006568: tryptophan metabolic process8.49E-04
43GO:0010024: phytochromobilin biosynthetic process8.49E-04
44GO:0043039: tRNA aminoacylation8.49E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.49E-04
46GO:0006782: protoporphyrinogen IX biosynthetic process9.02E-04
47GO:0009073: aromatic amino acid family biosynthetic process1.04E-03
48GO:0006352: DNA-templated transcription, initiation1.04E-03
49GO:0018119: peptidyl-cysteine S-nitrosylation1.04E-03
50GO:0009773: photosynthetic electron transport in photosystem I1.04E-03
51GO:0006788: heme oxidation1.38E-03
52GO:0006954: inflammatory response1.38E-03
53GO:0006518: peptide metabolic process1.38E-03
54GO:0071492: cellular response to UV-A1.38E-03
55GO:0006457: protein folding1.44E-03
56GO:0010207: photosystem II assembly1.51E-03
57GO:0019253: reductive pentose-phosphate cycle1.51E-03
58GO:0019762: glucosinolate catabolic process1.89E-03
59GO:0009650: UV protection1.99E-03
60GO:0006165: nucleoside diphosphate phosphorylation1.99E-03
61GO:0006228: UTP biosynthetic process1.99E-03
62GO:0006424: glutamyl-tRNA aminoacylation1.99E-03
63GO:0006986: response to unfolded protein1.99E-03
64GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.99E-03
65GO:2001141: regulation of RNA biosynthetic process1.99E-03
66GO:0051085: chaperone mediated protein folding requiring cofactor1.99E-03
67GO:0006241: CTP biosynthetic process1.99E-03
68GO:0006418: tRNA aminoacylation for protein translation2.31E-03
69GO:0061077: chaperone-mediated protein folding2.54E-03
70GO:0009409: response to cold2.59E-03
71GO:0006546: glycine catabolic process2.67E-03
72GO:0071483: cellular response to blue light2.67E-03
73GO:0071486: cellular response to high light intensity2.67E-03
74GO:0019464: glycine decarboxylation via glycine cleavage system2.67E-03
75GO:0006183: GTP biosynthetic process2.67E-03
76GO:0009411: response to UV3.04E-03
77GO:0009306: protein secretion3.30E-03
78GO:0032543: mitochondrial translation3.42E-03
79GO:0006564: L-serine biosynthetic process3.42E-03
80GO:0031365: N-terminal protein amino acid modification3.42E-03
81GO:0006461: protein complex assembly3.42E-03
82GO:0042335: cuticle development3.87E-03
83GO:0042549: photosystem II stabilization4.23E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.23E-03
85GO:0016554: cytidine to uridine editing4.23E-03
86GO:0042372: phylloquinone biosynthetic process5.09E-03
87GO:1901259: chloroplast rRNA processing5.09E-03
88GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.09E-03
89GO:0006694: steroid biosynthetic process5.09E-03
90GO:0010019: chloroplast-nucleus signaling pathway5.09E-03
91GO:0010555: response to mannitol5.09E-03
92GO:0009955: adaxial/abaxial pattern specification5.09E-03
93GO:0006400: tRNA modification6.02E-03
94GO:0009642: response to light intensity7.00E-03
95GO:0030091: protein repair7.00E-03
96GO:0042255: ribosome assembly7.00E-03
97GO:0006353: DNA-templated transcription, termination7.00E-03
98GO:0006605: protein targeting7.00E-03
99GO:0000028: ribosomal small subunit assembly7.00E-03
100GO:0055114: oxidation-reduction process7.03E-03
101GO:0006526: arginine biosynthetic process8.03E-03
102GO:0017004: cytochrome complex assembly8.03E-03
103GO:0009808: lignin metabolic process8.03E-03
104GO:0006810: transport8.78E-03
105GO:0010206: photosystem II repair9.12E-03
106GO:0006783: heme biosynthetic process9.12E-03
107GO:0006189: 'de novo' IMP biosynthetic process9.12E-03
108GO:0018298: protein-chromophore linkage9.76E-03
109GO:0009817: defense response to fungus, incompatible interaction9.76E-03
110GO:0009790: embryo development9.93E-03
111GO:0010205: photoinhibition1.03E-02
112GO:1900865: chloroplast RNA modification1.03E-02
113GO:0010119: regulation of stomatal movement1.13E-02
114GO:0009631: cold acclimation1.13E-02
115GO:0043069: negative regulation of programmed cell death1.14E-02
116GO:0045036: protein targeting to chloroplast1.14E-02
117GO:0006949: syncytium formation1.14E-02
118GO:0009637: response to blue light1.24E-02
119GO:0019684: photosynthesis, light reaction1.27E-02
120GO:0009089: lysine biosynthetic process via diaminopimelate1.27E-02
121GO:0043085: positive regulation of catalytic activity1.27E-02
122GO:0006415: translational termination1.27E-02
123GO:0006879: cellular iron ion homeostasis1.27E-02
124GO:0034599: cellular response to oxidative stress1.30E-02
125GO:0006839: mitochondrial transport1.42E-02
126GO:0006006: glucose metabolic process1.53E-02
127GO:0009725: response to hormone1.53E-02
128GO:0010114: response to red light1.60E-02
129GO:0010020: chloroplast fission1.66E-02
130GO:0010143: cutin biosynthetic process1.66E-02
131GO:0090351: seedling development1.81E-02
132GO:0006636: unsaturated fatty acid biosynthetic process1.95E-02
133GO:0019344: cysteine biosynthetic process2.10E-02
134GO:0000027: ribosomal large subunit assembly2.10E-02
135GO:0009768: photosynthesis, light harvesting in photosystem I2.25E-02
136GO:0009793: embryo development ending in seed dormancy2.28E-02
137GO:0031408: oxylipin biosynthetic process2.41E-02
138GO:0006096: glycolytic process2.56E-02
139GO:0016226: iron-sulfur cluster assembly2.57E-02
140GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.73E-02
141GO:0019722: calcium-mediated signaling2.90E-02
142GO:0008033: tRNA processing3.25E-02
143GO:0006520: cellular amino acid metabolic process3.42E-02
144GO:0006662: glycerol ether metabolic process3.42E-02
145GO:0006869: lipid transport3.93E-02
146GO:0000302: response to reactive oxygen species3.98E-02
147GO:0016132: brassinosteroid biosynthetic process3.98E-02
148GO:0006508: proteolysis4.04E-02
149GO:0016032: viral process4.17E-02
150GO:0032502: developmental process4.17E-02
151GO:0016042: lipid catabolic process4.38E-02
152GO:0009828: plant-type cell wall loosening4.56E-02
153GO:0007267: cell-cell signaling4.76E-02
154GO:0006413: translational initiation4.94E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
10GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
11GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
12GO:0019843: rRNA binding4.26E-25
13GO:0003735: structural constituent of ribosome2.67E-20
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.81E-11
15GO:0051920: peroxiredoxin activity5.82E-08
16GO:0016209: antioxidant activity2.06E-07
17GO:0005528: FK506 binding2.35E-07
18GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.39E-05
19GO:0001053: plastid sigma factor activity9.22E-05
20GO:0016987: sigma factor activity9.22E-05
21GO:0004089: carbonate dehydratase activity9.89E-05
22GO:0004831: tyrosine-tRNA ligase activity3.92E-04
23GO:0004655: porphobilinogen synthase activity3.92E-04
24GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity3.92E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.92E-04
26GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.92E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity3.92E-04
28GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity3.92E-04
29GO:0080132: fatty acid alpha-hydroxylase activity3.92E-04
30GO:0004033: aldo-keto reductase (NADP) activity4.48E-04
31GO:0016630: protochlorophyllide reductase activity8.49E-04
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.49E-04
33GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.49E-04
34GO:0004618: phosphoglycerate kinase activity8.49E-04
35GO:0004617: phosphoglycerate dehydrogenase activity8.49E-04
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.49E-04
37GO:0016168: chlorophyll binding1.10E-03
38GO:0016788: hydrolase activity, acting on ester bonds1.24E-03
39GO:0002161: aminoacyl-tRNA editing activity1.38E-03
40GO:0004148: dihydrolipoyl dehydrogenase activity1.38E-03
41GO:0030267: glyoxylate reductase (NADP) activity1.38E-03
42GO:0070402: NADPH binding1.38E-03
43GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.38E-03
44GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.38E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.38E-03
46GO:0008266: poly(U) RNA binding1.51E-03
47GO:0003723: RNA binding1.56E-03
48GO:0016149: translation release factor activity, codon specific1.99E-03
49GO:0016851: magnesium chelatase activity1.99E-03
50GO:0004550: nucleoside diphosphate kinase activity1.99E-03
51GO:0043023: ribosomal large subunit binding1.99E-03
52GO:0008097: 5S rRNA binding1.99E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity1.99E-03
54GO:0043495: protein anchor2.67E-03
55GO:0004392: heme oxygenase (decyclizing) activity2.67E-03
56GO:0022891: substrate-specific transmembrane transporter activity3.04E-03
57GO:0051287: NAD binding3.40E-03
58GO:0003959: NADPH dehydrogenase activity3.42E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor3.42E-03
60GO:0004040: amidase activity3.42E-03
61GO:0004812: aminoacyl-tRNA ligase activity3.58E-03
62GO:0004130: cytochrome-c peroxidase activity4.23E-03
63GO:0016208: AMP binding4.23E-03
64GO:0016688: L-ascorbate peroxidase activity4.23E-03
65GO:0008200: ion channel inhibitor activity4.23E-03
66GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.09E-03
67GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.09E-03
68GO:0004601: peroxidase activity5.19E-03
69GO:0019899: enzyme binding6.02E-03
70GO:0008235: metalloexopeptidase activity6.02E-03
71GO:0051082: unfolded protein binding6.12E-03
72GO:0052747: sinapyl alcohol dehydrogenase activity7.00E-03
73GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.03E-03
74GO:0052689: carboxylic ester hydrolase activity8.38E-03
75GO:0003729: mRNA binding9.03E-03
76GO:0003747: translation release factor activity9.12E-03
77GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.76E-03
78GO:0047617: acyl-CoA hydrolase activity1.03E-02
79GO:0005381: iron ion transmembrane transporter activity1.03E-02
80GO:0030234: enzyme regulator activity1.14E-02
81GO:0008047: enzyme activator activity1.14E-02
82GO:0008794: arsenate reductase (glutaredoxin) activity1.27E-02
83GO:0004177: aminopeptidase activity1.27E-02
84GO:0000049: tRNA binding1.40E-02
85GO:0045551: cinnamyl-alcohol dehydrogenase activity1.40E-02
86GO:0009055: electron carrier activity1.45E-02
87GO:0031072: heat shock protein binding1.53E-02
88GO:0051537: 2 iron, 2 sulfur cluster binding1.73E-02
89GO:0016491: oxidoreductase activity1.92E-02
90GO:0031409: pigment binding1.95E-02
91GO:0051536: iron-sulfur cluster binding2.10E-02
92GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.16E-02
93GO:0008324: cation transmembrane transporter activity2.25E-02
94GO:0051087: chaperone binding2.25E-02
95GO:0043424: protein histidine kinase binding2.25E-02
96GO:0030570: pectate lyase activity2.73E-02
97GO:0003727: single-stranded RNA binding2.90E-02
98GO:0047134: protein-disulfide reductase activity3.07E-02
99GO:0015035: protein disulfide oxidoreductase activity3.17E-02
100GO:0008080: N-acetyltransferase activity3.42E-02
101GO:0004791: thioredoxin-disulfide reductase activity3.61E-02
102GO:0016762: xyloglucan:xyloglucosyl transferase activity3.98E-02
103GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.36E-02
104GO:0016597: amino acid binding4.96E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009547: plastid ribosome0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0009507: chloroplast8.48E-92
5GO:0009570: chloroplast stroma2.70E-64
6GO:0009941: chloroplast envelope8.26E-46
7GO:0009579: thylakoid3.56E-33
8GO:0009535: chloroplast thylakoid membrane4.65E-30
9GO:0009543: chloroplast thylakoid lumen9.04E-22
10GO:0005840: ribosome2.30E-20
11GO:0031977: thylakoid lumen6.73E-17
12GO:0009534: chloroplast thylakoid2.60E-11
13GO:0042651: thylakoid membrane1.14E-05
14GO:0009654: photosystem II oxygen evolving complex1.14E-05
15GO:0048046: apoplast2.44E-05
16GO:0019898: extrinsic component of membrane5.20E-05
17GO:0000311: plastid large ribosomal subunit8.11E-05
18GO:0010319: stromule9.59E-05
19GO:0000312: plastid small ribosomal subunit1.19E-04
20GO:0030095: chloroplast photosystem II1.19E-04
21GO:0009533: chloroplast stromal thylakoid3.58E-04
22GO:0031969: chloroplast membrane4.15E-04
23GO:0009523: photosystem II5.89E-04
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.57E-04
25GO:0010007: magnesium chelatase complex1.38E-03
26GO:0005960: glycine cleavage complex1.99E-03
27GO:0009536: plastid2.05E-03
28GO:0016020: membrane2.15E-03
29GO:0009532: plastid stroma2.54E-03
30GO:0015935: small ribosomal subunit2.54E-03
31GO:0005763: mitochondrial small ribosomal subunit9.12E-03
32GO:0015934: large ribosomal subunit1.13E-02
33GO:0031012: extracellular matrix1.53E-02
34GO:0009505: plant-type cell wall1.74E-02
35GO:0022627: cytosolic small ribosomal subunit1.76E-02
36GO:0046658: anchored component of plasma membrane1.76E-02
37GO:0030076: light-harvesting complex1.81E-02
38GO:0005875: microtubule associated complex1.95E-02
39GO:0031225: anchored component of membrane2.05E-02
40GO:0022626: cytosolic ribosome2.86E-02
41GO:0022625: cytosolic large ribosomal subunit2.99E-02
42GO:0005618: cell wall3.08E-02
43GO:0009706: chloroplast inner membrane3.08E-02
44GO:0009522: photosystem I3.61E-02
45GO:0010287: plastoglobule3.65E-02
46GO:0009295: nucleoid4.76E-02
47GO:0005778: peroxisomal membrane4.76E-02
Gene type



Gene DE type