GO Enrichment Analysis of Co-expressed Genes with
AT1G04940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 2 | GO:0032264: IMP salvage | 0.00E+00 |
| 3 | GO:0071816: tail-anchored membrane protein insertion into ER membrane | 0.00E+00 |
| 4 | GO:0017126: nucleologenesis | 0.00E+00 |
| 5 | GO:0006750: glutathione biosynthetic process | 2.88E-05 |
| 6 | GO:0032469: endoplasmic reticulum calcium ion homeostasis | 2.88E-05 |
| 7 | GO:0009168: purine ribonucleoside monophosphate biosynthetic process | 2.88E-05 |
| 8 | GO:0006406: mRNA export from nucleus | 5.62E-05 |
| 9 | GO:0034398: telomere tethering at nuclear periphery | 7.28E-05 |
| 10 | GO:1902626: assembly of large subunit precursor of preribosome | 1.27E-04 |
| 11 | GO:0042256: mature ribosome assembly | 1.27E-04 |
| 12 | GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery | 1.89E-04 |
| 13 | GO:0000460: maturation of 5.8S rRNA | 2.57E-04 |
| 14 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 2.57E-04 |
| 15 | GO:0033320: UDP-D-xylose biosynthetic process | 2.57E-04 |
| 16 | GO:0018279: protein N-linked glycosylation via asparagine | 3.30E-04 |
| 17 | GO:0042732: D-xylose metabolic process | 4.06E-04 |
| 18 | GO:0001731: formation of translation preinitiation complex | 4.06E-04 |
| 19 | GO:0000470: maturation of LSU-rRNA | 4.06E-04 |
| 20 | GO:0000054: ribosomal subunit export from nucleus | 4.86E-04 |
| 21 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.86E-04 |
| 22 | GO:0000209: protein polyubiquitination | 5.06E-04 |
| 23 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 5.86E-04 |
| 24 | GO:0006102: isocitrate metabolic process | 6.55E-04 |
| 25 | GO:0060321: acceptance of pollen | 7.44E-04 |
| 26 | GO:0006526: arginine biosynthetic process | 7.44E-04 |
| 27 | GO:0009299: mRNA transcription | 1.03E-03 |
| 28 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 1.03E-03 |
| 29 | GO:0000266: mitochondrial fission | 1.23E-03 |
| 30 | GO:0009790: embryo development | 1.30E-03 |
| 31 | GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 1.34E-03 |
| 32 | GO:0055046: microgametogenesis | 1.34E-03 |
| 33 | GO:0009793: embryo development ending in seed dormancy | 1.38E-03 |
| 34 | GO:0006413: translational initiation | 1.43E-03 |
| 35 | GO:0006446: regulation of translational initiation | 1.45E-03 |
| 36 | GO:0009225: nucleotide-sugar metabolic process | 1.56E-03 |
| 37 | GO:0034976: response to endoplasmic reticulum stress | 1.67E-03 |
| 38 | GO:0051302: regulation of cell division | 1.92E-03 |
| 39 | GO:0016226: iron-sulfur cluster assembly | 2.17E-03 |
| 40 | GO:0071215: cellular response to abscisic acid stimulus | 2.30E-03 |
| 41 | GO:0009561: megagametogenesis | 2.43E-03 |
| 42 | GO:0051028: mRNA transport | 2.57E-03 |
| 43 | GO:0008033: tRNA processing | 2.70E-03 |
| 44 | GO:0006606: protein import into nucleus | 2.70E-03 |
| 45 | GO:0032502: developmental process | 3.43E-03 |
| 46 | GO:0016126: sterol biosynthetic process | 4.21E-03 |
| 47 | GO:0048767: root hair elongation | 5.22E-03 |
| 48 | GO:0009910: negative regulation of flower development | 5.58E-03 |
| 49 | GO:0006099: tricarboxylic acid cycle | 6.13E-03 |
| 50 | GO:0009664: plant-type cell wall organization | 8.29E-03 |
| 51 | GO:0006364: rRNA processing | 8.71E-03 |
| 52 | GO:0051603: proteolysis involved in cellular protein catabolic process | 8.92E-03 |
| 53 | GO:0006457: protein folding | 9.73E-03 |
| 54 | GO:0009553: embryo sac development | 1.09E-02 |
| 55 | GO:0018105: peptidyl-serine phosphorylation | 1.14E-02 |
| 56 | GO:0051726: regulation of cell cycle | 1.16E-02 |
| 57 | GO:0000398: mRNA splicing, via spliceosome | 1.23E-02 |
| 58 | GO:0009451: RNA modification | 1.67E-02 |
| 59 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.78E-02 |
| 60 | GO:0009826: unidimensional cell growth | 2.18E-02 |
| 61 | GO:0046777: protein autophosphorylation | 2.74E-02 |
| 62 | GO:0045454: cell redox homeostasis | 2.97E-02 |
| 63 | GO:0009753: response to jasmonic acid | 3.62E-02 |
| 64 | GO:0016310: phosphorylation | 3.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives | 0.00E+00 |
| 2 | GO:0003876: AMP deaminase activity | 0.00E+00 |
| 3 | GO:0004631: phosphomevalonate kinase activity | 0.00E+00 |
| 4 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 5 | GO:0004363: glutathione synthase activity | 0.00E+00 |
| 6 | GO:0000384: first spliceosomal transesterification activity | 0.00E+00 |
| 7 | GO:0004750: ribulose-phosphate 3-epimerase activity | 7.28E-05 |
| 8 | GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity | 7.28E-05 |
| 9 | GO:0070181: small ribosomal subunit rRNA binding | 1.27E-04 |
| 10 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 1.89E-04 |
| 11 | GO:0043023: ribosomal large subunit binding | 1.89E-04 |
| 12 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 3.30E-04 |
| 13 | GO:0048040: UDP-glucuronate decarboxylase activity | 4.06E-04 |
| 14 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.32E-04 |
| 15 | GO:0070403: NAD+ binding | 4.86E-04 |
| 16 | GO:0030515: snoRNA binding | 5.68E-04 |
| 17 | GO:0008312: 7S RNA binding | 6.55E-04 |
| 18 | GO:0043022: ribosome binding | 6.55E-04 |
| 19 | GO:0017056: structural constituent of nuclear pore | 6.55E-04 |
| 20 | GO:0015288: porin activity | 6.55E-04 |
| 21 | GO:0005487: nucleocytoplasmic transporter activity | 9.29E-04 |
| 22 | GO:0000166: nucleotide binding | 1.03E-03 |
| 23 | GO:0008139: nuclear localization sequence binding | 1.34E-03 |
| 24 | GO:0005262: calcium channel activity | 1.34E-03 |
| 25 | GO:0031624: ubiquitin conjugating enzyme binding | 1.45E-03 |
| 26 | GO:0003743: translation initiation factor activity | 1.78E-03 |
| 27 | GO:0051536: iron-sulfur cluster binding | 1.79E-03 |
| 28 | GO:0043424: protein histidine kinase binding | 1.92E-03 |
| 29 | GO:0003756: protein disulfide isomerase activity | 2.43E-03 |
| 30 | GO:0001085: RNA polymerase II transcription factor binding | 2.84E-03 |
| 31 | GO:0010181: FMN binding | 2.99E-03 |
| 32 | GO:0016853: isomerase activity | 2.99E-03 |
| 33 | GO:0061630: ubiquitin protein ligase activity | 3.04E-03 |
| 34 | GO:0003729: mRNA binding | 4.11E-03 |
| 35 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 4.54E-03 |
| 36 | GO:0004683: calmodulin-dependent protein kinase activity | 4.71E-03 |
| 37 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 5.58E-03 |
| 38 | GO:0043621: protein self-association | 7.48E-03 |
| 39 | GO:0003723: RNA binding | 8.70E-03 |
| 40 | GO:0051082: unfolded protein binding | 1.12E-02 |
| 41 | GO:0016829: lyase activity | 1.38E-02 |
| 42 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.43E-02 |
| 43 | GO:0005515: protein binding | 1.44E-02 |
| 44 | GO:0003682: chromatin binding | 2.33E-02 |
| 45 | GO:0042803: protein homodimerization activity | 3.07E-02 |
| 46 | GO:0004519: endonuclease activity | 3.66E-02 |
| 47 | GO:0005524: ATP binding | 4.94E-02 |
| 48 | GO:0008270: zinc ion binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070274: RES complex | 0.00E+00 |
| 2 | GO:0019867: outer membrane | 0.00E+00 |
| 3 | GO:0032040: small-subunit processome | 2.80E-05 |
| 4 | GO:0044614: nuclear pore cytoplasmic filaments | 1.27E-04 |
| 5 | GO:0005730: nucleolus | 1.32E-04 |
| 6 | GO:0008250: oligosaccharyltransferase complex | 3.30E-04 |
| 7 | GO:0016282: eukaryotic 43S preinitiation complex | 4.06E-04 |
| 8 | GO:0033290: eukaryotic 48S preinitiation complex | 4.86E-04 |
| 9 | GO:0016272: prefoldin complex | 4.86E-04 |
| 10 | GO:0030687: preribosome, large subunit precursor | 5.68E-04 |
| 11 | GO:0005680: anaphase-promoting complex | 8.35E-04 |
| 12 | GO:0071011: precatalytic spliceosome | 9.29E-04 |
| 13 | GO:0005686: U2 snRNP | 1.03E-03 |
| 14 | GO:0005829: cytosol | 1.06E-03 |
| 15 | GO:0071013: catalytic step 2 spliceosome | 1.13E-03 |
| 16 | GO:0031307: integral component of mitochondrial outer membrane | 1.23E-03 |
| 17 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.56E-03 |
| 18 | GO:0005783: endoplasmic reticulum | 1.75E-03 |
| 19 | GO:0005774: vacuolar membrane | 2.54E-03 |
| 20 | GO:0031965: nuclear membrane | 3.13E-03 |
| 21 | GO:0032580: Golgi cisterna membrane | 3.73E-03 |
| 22 | GO:0005789: endoplasmic reticulum membrane | 4.25E-03 |
| 23 | GO:0005788: endoplasmic reticulum lumen | 4.37E-03 |
| 24 | GO:0005667: transcription factor complex | 4.54E-03 |
| 25 | GO:0000151: ubiquitin ligase complex | 5.05E-03 |
| 26 | GO:0031902: late endosome membrane | 6.69E-03 |
| 27 | GO:0005794: Golgi apparatus | 9.10E-03 |
| 28 | GO:0005635: nuclear envelope | 9.14E-03 |
| 29 | GO:0005737: cytoplasm | 9.71E-03 |
| 30 | GO:0016607: nuclear speck | 1.00E-02 |
| 31 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.19E-02 |
| 32 | GO:0046658: anchored component of plasma membrane | 2.00E-02 |
| 33 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.39E-02 |
| 34 | GO:0043231: intracellular membrane-bounded organelle | 3.70E-02 |