co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010213: non-photoreactive DNA repair	7.41E-06
2	GO:0016050: vesicle organization	3.67E-05
3	GO:0016570: histone modification	3.67E-05
4	GO:0008333: endosome to lysosome transport	3.67E-05
5	GO:0000380: alternative mRNA splicing, via spliceosome	1.04E-04
6	GO:0006368: transcription elongation from RNA polymerase II promoter	1.88E-04
7	GO:0019375: galactolipid biosynthetic process	2.20E-04
8	GO:0030091: protein repair	2.20E-04
9	GO:0016441: posttranscriptional gene silencing	3.54E-04
10	GO:0006896: Golgi to vacuole transport	3.54E-04
11	GO:0007064: mitotic sister chromatid cohesion	3.54E-04
12	GO:0006289: nucleotide-excision repair	6.20E-04
13	GO:0006281: DNA repair	8.45E-04
14	GO:0009958: positive gravitropism	9.64E-04
15	GO:0008654: phospholipid biosynthetic process	1.06E-03
16	GO:0009556: microsporogenesis	1.06E-03
17	GO:0006623: protein targeting to vacuole	1.06E-03
18	GO:0010252: auxin homeostasis	1.25E-03
19	GO:0009910: negative regulation of flower development	1.84E-03
20	GO:0009631: cold acclimation	1.84E-03
21	GO:0034599: cellular response to oxidative stress	2.01E-03
22	GO:0006897: endocytosis	2.19E-03
23	GO:0010224: response to UV-B	2.89E-03
24	GO:0016036: cellular response to phosphate starvation	4.96E-03
25	GO:0010228: vegetative to reproductive phase transition of meristem	5.37E-03
26	GO:0009408: response to heat	1.07E-02
27	GO:0006629: lipid metabolic process	1.07E-02
28	GO:0048364: root development	1.11E-02
29	GO:0009908: flower development	1.50E-02
30	GO:0009555: pollen development	1.61E-02
31	GO:0035556: intracellular signal transduction	1.68E-02
32	GO:0045893: positive regulation of transcription, DNA-templated	1.78E-02
33	GO:0006457: protein folding	1.94E-02
34	GO:0006511: ubiquitin-dependent protein catabolic process	2.01E-02
35	GO:0007275: multicellular organism development	4.32E-02
36	GO:0007165: signal transduction	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
2	GO:0004594: pantothenate kinase activity	2.00E-05
3	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	2.00E-05
4	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	3.67E-05
5	GO:0004180: carboxypeptidase activity	3.67E-05
6	GO:0035091: phosphatidylinositol binding	9.42E-05
7	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.59E-04
8	GO:0008195: phosphatidate phosphatase activity	1.59E-04
9	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.59E-04
10	GO:0004527: exonuclease activity	9.64E-04
11	GO:0004518: nuclease activity	1.15E-03
12	GO:0008236: serine-type peptidase activity	1.61E-03
13	GO:0003697: single-stranded DNA binding	1.95E-03
14	GO:0004519: endonuclease activity	1.14E-02
15	GO:0000166: nucleotide binding	1.61E-02
16	GO:0046872: metal ion binding	2.78E-02
17	GO:0004842: ubiquitin-protein transferase activity	3.36E-02
18	GO:0016787: hydrolase activity	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0016593: Cdc73/Paf1 complex	7.90E-05
2	GO:0005771: multivesicular body	1.30E-04
3	GO:0030904: retromer complex	1.30E-04
4	GO:0019898: extrinsic component of membrane	1.06E-03
5	GO:0000785: chromatin	1.15E-03
6	GO:0031902: late endosome membrane	2.19E-03
7	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.50E-03
8	GO:0043231: intracellular membrane-bounded organelle	1.15E-02
9	GO:0005829: cytosol	1.36E-02
10	GO:0005768: endosome	2.47E-02
11	GO:0005634: nucleus	3.05E-02
12	GO:0005730: nucleolus	3.88E-02