co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0006546: glycine catabolic process	7.02E-08
5	GO:0007155: cell adhesion	1.41E-06
6	GO:0019464: glycine decarboxylation via glycine cleavage system	1.80E-05
7	GO:0045490: pectin catabolic process	3.30E-05
8	GO:0010583: response to cyclopentenone	1.10E-04
9	GO:0010442: guard cell morphogenesis	1.50E-04
10	GO:0071370: cellular response to gibberellin stimulus	1.50E-04
11	GO:0000066: mitochondrial ornithine transport	1.50E-04
12	GO:0019510: S-adenosylhomocysteine catabolic process	1.50E-04
13	GO:0045454: cell redox homeostasis	1.97E-04
14	GO:0010192: mucilage biosynthetic process	2.32E-04
15	GO:0016051: carbohydrate biosynthetic process	3.38E-04
16	GO:0033353: S-adenosylmethionine cycle	3.42E-04
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.42E-04
18	GO:0052541: plant-type cell wall cellulose metabolic process	3.42E-04
19	GO:0060919: auxin influx	3.42E-04
20	GO:0010020: chloroplast fission	4.00E-04
21	GO:0019253: reductive pentose-phosphate cycle	4.00E-04
22	GO:0006696: ergosterol biosynthetic process	5.61E-04
23	GO:0006065: UDP-glucuronate biosynthetic process	5.61E-04
24	GO:0006000: fructose metabolic process	5.61E-04
25	GO:0010581: regulation of starch biosynthetic process	5.61E-04
26	GO:0071555: cell wall organization	7.18E-04
27	GO:0080092: regulation of pollen tube growth	7.29E-04
28	GO:0043572: plastid fission	8.03E-04
29	GO:0007231: osmosensory signaling pathway	8.03E-04
30	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.17E-04
31	GO:0016117: carotenoid biosynthetic process	9.27E-04
32	GO:0000271: polysaccharide biosynthetic process	9.99E-04
33	GO:0042545: cell wall modification	1.02E-03
34	GO:0009694: jasmonic acid metabolic process	1.06E-03
35	GO:0009765: photosynthesis, light harvesting	1.06E-03
36	GO:0006085: acetyl-CoA biosynthetic process	1.06E-03
37	GO:0033500: carbohydrate homeostasis	1.06E-03
38	GO:0045489: pectin biosynthetic process	1.07E-03
39	GO:0016123: xanthophyll biosynthetic process	1.35E-03
40	GO:0032876: negative regulation of DNA endoreduplication	1.35E-03
41	GO:0048359: mucilage metabolic process involved in seed coat development	1.35E-03
42	GO:0016120: carotene biosynthetic process	1.35E-03
43	GO:0016126: sterol biosynthetic process	1.88E-03
44	GO:0017148: negative regulation of translation	1.98E-03
45	GO:0008610: lipid biosynthetic process	2.70E-03
46	GO:0006875: cellular metal ion homeostasis	2.70E-03
47	GO:0007389: pattern specification process	3.08E-03
48	GO:0006002: fructose 6-phosphate metabolic process	3.08E-03
49	GO:0019430: removal of superoxide radicals	3.08E-03
50	GO:0006754: ATP biosynthetic process	3.49E-03
51	GO:0048589: developmental growth	3.49E-03
52	GO:0006839: mitochondrial transport	3.52E-03
53	GO:0010380: regulation of chlorophyll biosynthetic process	3.91E-03
54	GO:0043069: negative regulation of programmed cell death	4.35E-03
55	GO:0048829: root cap development	4.35E-03
56	GO:0043085: positive regulation of catalytic activity	4.80E-03
57	GO:0018119: peptidyl-cysteine S-nitrosylation	4.80E-03
58	GO:0006816: calcium ion transport	4.80E-03
59	GO:0009773: photosynthetic electron transport in photosystem I	4.80E-03
60	GO:0045037: protein import into chloroplast stroma	5.27E-03
61	GO:0050826: response to freezing	5.75E-03
62	GO:0009725: response to hormone	5.75E-03
63	GO:0006094: gluconeogenesis	5.75E-03
64	GO:0005986: sucrose biosynthetic process	5.75E-03
65	GO:0005975: carbohydrate metabolic process	5.89E-03
66	GO:0010207: photosystem II assembly	6.25E-03
67	GO:0070588: calcium ion transmembrane transport	6.77E-03
68	GO:0009969: xyloglucan biosynthetic process	6.77E-03
69	GO:0009825: multidimensional cell growth	6.77E-03
70	GO:0005985: sucrose metabolic process	6.77E-03
71	GO:0009833: plant-type primary cell wall biogenesis	7.30E-03
72	GO:0006071: glycerol metabolic process	7.30E-03
73	GO:0006833: water transport	7.30E-03
74	GO:0007010: cytoskeleton organization	7.84E-03
75	GO:0009695: jasmonic acid biosynthetic process	8.40E-03
76	GO:0010026: trichome differentiation	8.40E-03
77	GO:0007017: microtubule-based process	8.40E-03
78	GO:0003333: amino acid transmembrane transport	8.97E-03
79	GO:0031408: oxylipin biosynthetic process	8.97E-03
80	GO:0030245: cellulose catabolic process	9.56E-03
81	GO:0006730: one-carbon metabolic process	9.56E-03
82	GO:0009294: DNA mediated transformation	1.02E-02
83	GO:0019722: calcium-mediated signaling	1.08E-02
84	GO:0080022: primary root development	1.20E-02
85	GO:0034220: ion transmembrane transport	1.20E-02
86	GO:0010051: xylem and phloem pattern formation	1.20E-02
87	GO:0055114: oxidation-reduction process	1.39E-02
88	GO:0019252: starch biosynthetic process	1.41E-02
89	GO:0071554: cell wall organization or biogenesis	1.47E-02
90	GO:0007166: cell surface receptor signaling pathway	1.51E-02
91	GO:0009617: response to bacterium	1.58E-02
92	GO:1901657: glycosyl compound metabolic process	1.62E-02
93	GO:0007267: cell-cell signaling	1.76E-02
94	GO:0006810: transport	1.94E-02
95	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.99E-02
96	GO:0009658: chloroplast organization	2.05E-02
97	GO:0046686: response to cadmium ion	2.12E-02
98	GO:0030244: cellulose biosynthetic process	2.31E-02
99	GO:0018298: protein-chromophore linkage	2.31E-02
100	GO:0009832: plant-type cell wall biogenesis	2.40E-02
101	GO:0048767: root hair elongation	2.40E-02
102	GO:0010311: lateral root formation	2.40E-02
103	GO:0006865: amino acid transport	2.65E-02
104	GO:0009867: jasmonic acid mediated signaling pathway	2.74E-02
105	GO:0006631: fatty acid metabolic process	3.09E-02
106	GO:0009926: auxin polar transport	3.28E-02
107	GO:0009744: response to sucrose	3.28E-02
108	GO:0051707: response to other organism	3.28E-02
109	GO:0032259: methylation	3.58E-02
110	GO:0016042: lipid catabolic process	3.64E-02
111	GO:0006629: lipid metabolic process	3.74E-02
112	GO:0042742: defense response to bacterium	3.93E-02
113	GO:0008152: metabolic process	4.12E-02
114	GO:0051603: proteolysis involved in cellular protein catabolic process	4.15E-02
115	GO:0006096: glycolytic process	4.56E-02
116	GO:0048367: shoot system development	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
4	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0046905: phytoene synthase activity	0.00E+00
9	GO:0051920: peroxiredoxin activity	5.58E-07
10	GO:0016209: antioxidant activity	1.41E-06
11	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.63E-06
12	GO:0051753: mannan synthase activity	6.14E-05
13	GO:0030599: pectinesterase activity	1.14E-04
14	GO:0015088: copper uptake transmembrane transporter activity	1.50E-04
15	GO:0030797: 24-methylenesterol C-methyltransferase activity	1.50E-04
16	GO:0004560: alpha-L-fucosidase activity	1.50E-04
17	GO:0004013: adenosylhomocysteinase activity	1.50E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	1.50E-04
19	GO:0051996: squalene synthase activity	1.50E-04
20	GO:0010313: phytochrome binding	1.50E-04
21	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.70E-04
22	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	3.42E-04
23	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.42E-04
24	GO:0004618: phosphoglycerate kinase activity	3.42E-04
25	GO:0004047: aminomethyltransferase activity	3.42E-04
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.42E-04
27	GO:0000064: L-ornithine transmembrane transporter activity	3.42E-04
28	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.61E-04
29	GO:0003913: DNA photolyase activity	5.61E-04
30	GO:0004148: dihydrolipoyl dehydrogenase activity	5.61E-04
31	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.29E-04
32	GO:0045330: aspartyl esterase activity	7.77E-04
33	GO:0030570: pectate lyase activity	7.93E-04
34	GO:0003878: ATP citrate synthase activity	8.03E-04
35	GO:0048027: mRNA 5'-UTR binding	8.03E-04
36	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.03E-04
37	GO:0004659: prenyltransferase activity	1.06E-03
38	GO:0010328: auxin influx transmembrane transporter activity	1.06E-03
39	GO:0016758: transferase activity, transferring hexosyl groups	1.35E-03
40	GO:0042578: phosphoric ester hydrolase activity	1.65E-03
41	GO:0000210: NAD+ diphosphatase activity	1.65E-03
42	GO:0005200: structural constituent of cytoskeleton	1.68E-03
43	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.68E-03
44	GO:0009881: photoreceptor activity	2.33E-03
45	GO:0016757: transferase activity, transferring glycosyl groups	2.57E-03
46	GO:0004564: beta-fructofuranosidase activity	2.70E-03
47	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.49E-03
48	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.49E-03
49	GO:0004601: peroxidase activity	3.65E-03
50	GO:0004575: sucrose alpha-glucosidase activity	3.91E-03
51	GO:0005381: iron ion transmembrane transporter activity	3.91E-03
52	GO:0008047: enzyme activator activity	4.35E-03
53	GO:0051287: NAD binding	4.81E-03
54	GO:0008378: galactosyltransferase activity	5.27E-03
55	GO:0004672: protein kinase activity	5.56E-03
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.70E-03
57	GO:0005262: calcium channel activity	5.75E-03
58	GO:0004565: beta-galactosidase activity	5.75E-03
59	GO:0045735: nutrient reservoir activity	6.32E-03
60	GO:0004857: enzyme inhibitor activity	7.84E-03
61	GO:0051087: chaperone binding	8.40E-03
62	GO:0004176: ATP-dependent peptidase activity	8.97E-03
63	GO:0016760: cellulose synthase (UDP-forming) activity	1.02E-02
64	GO:0008810: cellulase activity	1.02E-02
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.23E-02
66	GO:0003824: catalytic activity	1.25E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.34E-02
68	GO:0004872: receptor activity	1.41E-02
69	GO:0004518: nuclease activity	1.55E-02
70	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.62E-02
71	GO:0016759: cellulose synthase activity	1.69E-02
72	GO:0008483: transaminase activity	1.76E-02
73	GO:0008237: metallopeptidase activity	1.76E-02
74	GO:0016413: O-acetyltransferase activity	1.84E-02
75	GO:0015250: water channel activity	1.92E-02
76	GO:0016788: hydrolase activity, acting on ester bonds	2.09E-02
77	GO:0102483: scopolin beta-glucosidase activity	2.15E-02
78	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.23E-02
79	GO:0004222: metalloendopeptidase activity	2.48E-02
80	GO:0005507: copper ion binding	2.54E-02
81	GO:0030145: manganese ion binding	2.56E-02
82	GO:0050897: cobalt ion binding	2.56E-02
83	GO:0003746: translation elongation factor activity	2.74E-02
84	GO:0052689: carboxylic ester hydrolase activity	2.81E-02
85	GO:0008422: beta-glucosidase activity	2.91E-02
86	GO:0004185: serine-type carboxypeptidase activity	3.28E-02
87	GO:0015293: symporter activity	3.56E-02
88	GO:0005198: structural molecule activity	3.56E-02
89	GO:0003924: GTPase activity	3.74E-02
90	GO:0015171: amino acid transmembrane transporter activity	4.36E-02
91	GO:0004650: polygalacturonase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009505: plant-type cell wall	8.50E-08
3	GO:0031225: anchored component of membrane	9.41E-08
4	GO:0048046: apoplast	2.87E-07
5	GO:0005960: glycine cleavage complex	9.63E-06
6	GO:0005576: extracellular region	3.04E-05
7	GO:0046658: anchored component of plasma membrane	6.20E-05
8	GO:0005618: cell wall	9.36E-05
9	GO:0000139: Golgi membrane	3.35E-04
10	GO:0009570: chloroplast stroma	4.62E-04
11	GO:0005794: Golgi apparatus	4.86E-04
12	GO:0005853: eukaryotic translation elongation factor 1 complex	5.61E-04
13	GO:0005775: vacuolar lumen	8.03E-04
14	GO:0009346: citrate lyase complex	8.03E-04
15	GO:0031897: Tic complex	1.06E-03
16	GO:0009579: thylakoid	1.13E-03
17	GO:0009534: chloroplast thylakoid	1.15E-03
18	GO:0009507: chloroplast	1.30E-03
19	GO:0005886: plasma membrane	1.51E-03
20	GO:0010168: ER body	1.65E-03
21	GO:0009941: chloroplast envelope	1.74E-03
22	GO:0009533: chloroplast stromal thylakoid	2.33E-03
23	GO:0000325: plant-type vacuole	2.82E-03
24	GO:0009539: photosystem II reaction center	3.08E-03
25	GO:0045298: tubulin complex	3.49E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.49E-03
27	GO:0016324: apical plasma membrane	4.35E-03
28	GO:0005773: vacuole	6.75E-03
29	GO:0030176: integral component of endoplasmic reticulum membrane	6.77E-03
30	GO:0005875: microtubule associated complex	7.30E-03
31	GO:0009706: chloroplast inner membrane	7.61E-03
32	GO:0009506: plasmodesma	8.08E-03
33	GO:0042651: thylakoid membrane	8.40E-03
34	GO:0009654: photosystem II oxygen evolving complex	8.40E-03
35	GO:0016021: integral component of membrane	8.53E-03
36	GO:0009532: plastid stroma	8.97E-03
37	GO:0010287: plastoglobule	9.03E-03
38	GO:0009543: chloroplast thylakoid lumen	9.54E-03
39	GO:0009535: chloroplast thylakoid membrane	1.16E-02
40	GO:0010319: stromule	1.76E-02
41	GO:0005874: microtubule	2.45E-02
42	GO:0031969: chloroplast membrane	2.54E-02
43	GO:0005802: trans-Golgi network	2.94E-02
44	GO:0031902: late endosome membrane	3.09E-02
45	GO:0031977: thylakoid lumen	3.09E-02
46	GO:0016020: membrane	3.17E-02
47	GO:0005768: endosome	3.45E-02
48	GO:0005743: mitochondrial inner membrane	3.48E-02
49	GO:0005856: cytoskeleton	3.56E-02
50	GO:0005747: mitochondrial respiratory chain complex I	4.67E-02