co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0045489: pectin biosynthetic process	2.31E-08
4	GO:0010583: response to cyclopentenone	2.65E-06
5	GO:0071555: cell wall organization	1.31E-05
6	GO:0000271: polysaccharide biosynthetic process	4.73E-05
7	GO:0071370: cellular response to gibberellin stimulus	1.30E-04
8	GO:0000066: mitochondrial ornithine transport	1.30E-04
9	GO:1902265: abscisic acid homeostasis	1.30E-04
10	GO:0016051: carbohydrate biosynthetic process	2.58E-04
11	GO:0030036: actin cytoskeleton organization	2.89E-04
12	GO:0006650: glycerophospholipid metabolic process	2.99E-04
13	GO:0009629: response to gravity	2.99E-04
14	GO:1903338: regulation of cell wall organization or biogenesis	2.99E-04
15	GO:0007154: cell communication	2.99E-04
16	GO:1900111: positive regulation of histone H3-K9 dimethylation	2.99E-04
17	GO:0048587: regulation of short-day photoperiodism, flowering	2.99E-04
18	GO:0006695: cholesterol biosynthetic process	2.99E-04
19	GO:0032922: circadian regulation of gene expression	4.92E-04
20	GO:0010253: UDP-rhamnose biosynthetic process	4.92E-04
21	GO:0031022: nuclear migration along microfilament	4.92E-04
22	GO:0040007: growth	6.54E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.76E-04
24	GO:0015858: nucleoside transport	7.04E-04
25	GO:0009855: determination of bilateral symmetry	7.04E-04
26	GO:0010371: regulation of gibberellin biosynthetic process	7.04E-04
27	GO:0051016: barbed-end actin filament capping	7.04E-04
28	GO:0009741: response to brassinosteroid	8.87E-04
29	GO:0006546: glycine catabolic process	9.34E-04
30	GO:0009902: chloroplast relocation	9.34E-04
31	GO:0006085: acetyl-CoA biosynthetic process	9.34E-04
32	GO:0007264: small GTPase mediated signal transduction	1.15E-03
33	GO:0016126: sterol biosynthetic process	1.55E-03
34	GO:0010014: meristem initiation	1.73E-03
35	GO:0045926: negative regulation of growth	1.73E-03
36	GO:0017148: negative regulation of translation	1.73E-03
37	GO:0009903: chloroplast avoidance movement	1.73E-03
38	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.73E-03
39	GO:0009955: adaxial/abaxial pattern specification	1.73E-03
40	GO:0080060: integument development	1.73E-03
41	GO:0051510: regulation of unidimensional cell growth	2.04E-03
42	GO:0009690: cytokinin metabolic process	2.36E-03
43	GO:0045010: actin nucleation	2.36E-03
44	GO:0031540: regulation of anthocyanin biosynthetic process	2.36E-03
45	GO:0052543: callose deposition in cell wall	2.36E-03
46	GO:0007155: cell adhesion	2.36E-03
47	GO:0008610: lipid biosynthetic process	2.36E-03
48	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.36E-03
49	GO:0009932: cell tip growth	2.69E-03
50	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.69E-03
51	GO:0048193: Golgi vesicle transport	2.69E-03
52	GO:0033384: geranyl diphosphate biosynthetic process	3.04E-03
53	GO:0006754: ATP biosynthetic process	3.04E-03
54	GO:0009056: catabolic process	3.04E-03
55	GO:0000902: cell morphogenesis	3.04E-03
56	GO:0045337: farnesyl diphosphate biosynthetic process	3.04E-03
57	GO:0042546: cell wall biogenesis	3.39E-03
58	GO:0016573: histone acetylation	3.41E-03
59	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.79E-03
60	GO:0006535: cysteine biosynthetic process from serine	3.79E-03
61	GO:0010192: mucilage biosynthetic process	3.79E-03
62	GO:0010072: primary shoot apical meristem specification	4.18E-03
63	GO:0000038: very long-chain fatty acid metabolic process	4.18E-03
64	GO:0006790: sulfur compound metabolic process	4.58E-03
65	GO:0030048: actin filament-based movement	5.00E-03
66	GO:0048768: root hair cell tip growth	5.44E-03
67	GO:0046854: phosphatidylinositol phosphorylation	5.88E-03
68	GO:0009225: nucleotide-sugar metabolic process	5.88E-03
69	GO:0010167: response to nitrate	5.88E-03
70	GO:0005985: sucrose metabolic process	5.88E-03
71	GO:0009833: plant-type primary cell wall biogenesis	6.34E-03
72	GO:0006833: water transport	6.34E-03
73	GO:0009742: brassinosteroid mediated signaling pathway	6.59E-03
74	GO:0006338: chromatin remodeling	6.81E-03
75	GO:0009944: polarity specification of adaxial/abaxial axis	6.81E-03
76	GO:0019344: cysteine biosynthetic process	6.81E-03
77	GO:0007017: microtubule-based process	7.30E-03
78	GO:0010431: seed maturation	7.79E-03
79	GO:0019722: calcium-mediated signaling	9.35E-03
80	GO:0006468: protein phosphorylation	9.71E-03
81	GO:0042335: cuticle development	1.04E-02
82	GO:0080022: primary root development	1.04E-02
83	GO:0034220: ion transmembrane transport	1.04E-02
84	GO:0000226: microtubule cytoskeleton organization	1.04E-02
85	GO:0007623: circadian rhythm	1.08E-02
86	GO:0008360: regulation of cell shape	1.10E-02
87	GO:0008654: phospholipid biosynthetic process	1.22E-02
88	GO:0009791: post-embryonic development	1.22E-02
89	GO:0007166: cell surface receptor signaling pathway	1.23E-02
90	GO:0009416: response to light stimulus	1.26E-02
91	GO:0071554: cell wall organization or biogenesis	1.28E-02
92	GO:0032502: developmental process	1.34E-02
93	GO:0007267: cell-cell signaling	1.53E-02
94	GO:0071805: potassium ion transmembrane transport	1.53E-02
95	GO:0010029: regulation of seed germination	1.73E-02
96	GO:0009607: response to biotic stimulus	1.73E-02
97	GO:0042128: nitrate assimilation	1.79E-02
98	GO:0009860: pollen tube growth	1.80E-02
99	GO:0010411: xyloglucan metabolic process	1.86E-02
100	GO:0006950: response to stress	1.86E-02
101	GO:0016049: cell growth	1.93E-02
102	GO:0030244: cellulose biosynthetic process	2.00E-02
103	GO:0008219: cell death	2.00E-02
104	GO:0010311: lateral root formation	2.07E-02
105	GO:0009832: plant-type cell wall biogenesis	2.07E-02
106	GO:0009813: flavonoid biosynthetic process	2.07E-02
107	GO:0010119: regulation of stomatal movement	2.22E-02
108	GO:0046777: protein autophosphorylation	2.22E-02
109	GO:0009637: response to blue light	2.37E-02
110	GO:0006839: mitochondrial transport	2.60E-02
111	GO:0009926: auxin polar transport	2.84E-02
112	GO:0031347: regulation of defense response	3.25E-02
113	GO:0030154: cell differentiation	3.40E-02
114	GO:0006813: potassium ion transport	3.51E-02
115	GO:0010224: response to UV-B	3.60E-02
116	GO:0051603: proteolysis involved in cellular protein catabolic process	3.60E-02
117	GO:0051726: regulation of cell cycle	4.70E-02
118	GO:0006810: transport	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
5	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
6	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.78E-05
7	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.08E-04
8	GO:0010313: phytochrome binding	1.30E-04
9	GO:0003838: sterol 24-C-methyltransferase activity	1.30E-04
10	GO:0050377: UDP-glucose 4,6-dehydratase activity	2.99E-04
11	GO:0048531: beta-1,3-galactosyltransferase activity	2.99E-04
12	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	2.99E-04
13	GO:0050017: L-3-cyanoalanine synthase activity	2.99E-04
14	GO:0004047: aminomethyltransferase activity	2.99E-04
15	GO:0010280: UDP-L-rhamnose synthase activity	2.99E-04
16	GO:0000064: L-ornithine transmembrane transporter activity	2.99E-04
17	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.04E-04
18	GO:0001872: (1->3)-beta-D-glucan binding	7.04E-04
19	GO:0003878: ATP citrate synthase activity	7.04E-04
20	GO:0048027: mRNA 5'-UTR binding	7.04E-04
21	GO:0019901: protein kinase binding	1.02E-03
22	GO:0016758: transferase activity, transferring hexosyl groups	1.05E-03
23	GO:0008374: O-acyltransferase activity	1.18E-03
24	GO:0005200: structural constituent of cytoskeleton	1.38E-03
25	GO:0016757: transferase activity, transferring glycosyl groups	1.64E-03
26	GO:0004124: cysteine synthase activity	1.73E-03
27	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.73E-03
28	GO:0030247: polysaccharide binding	1.81E-03
29	GO:0004564: beta-fructofuranosidase activity	2.36E-03
30	GO:0005337: nucleoside transmembrane transporter activity	2.36E-03
31	GO:0035064: methylated histone binding	2.36E-03
32	GO:0003843: 1,3-beta-D-glucan synthase activity	2.69E-03
33	GO:0046982: protein heterodimerization activity	2.76E-03
34	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.04E-03
35	GO:0004337: geranyltranstransferase activity	3.04E-03
36	GO:0004575: sucrose alpha-glucosidase activity	3.41E-03
37	GO:0004672: protein kinase activity	3.89E-03
38	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.18E-03
39	GO:0004161: dimethylallyltranstransferase activity	4.18E-03
40	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.44E-03
41	GO:0003779: actin binding	6.03E-03
42	GO:0003924: GTPase activity	6.08E-03
43	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.34E-03
44	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.34E-03
45	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.34E-03
46	GO:0015079: potassium ion transmembrane transporter activity	7.30E-03
47	GO:0019706: protein-cysteine S-palmitoyltransferase activity	7.79E-03
48	GO:0004707: MAP kinase activity	7.79E-03
49	GO:0016760: cellulose synthase (UDP-forming) activity	8.82E-03
50	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.00E-02
51	GO:0004674: protein serine/threonine kinase activity	1.10E-02
52	GO:0016853: isomerase activity	1.16E-02
53	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.28E-02
54	GO:0004518: nuclease activity	1.34E-02
55	GO:0051015: actin filament binding	1.40E-02
56	GO:0016759: cellulose synthase activity	1.46E-02
57	GO:0008483: transaminase activity	1.53E-02
58	GO:0016413: O-acetyltransferase activity	1.59E-02
59	GO:0016740: transferase activity	1.62E-02
60	GO:0015250: water channel activity	1.66E-02
61	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.86E-02
62	GO:0005507: copper ion binding	1.97E-02
63	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.15E-02
64	GO:0005525: GTP binding	2.36E-02
65	GO:0016787: hydrolase activity	2.51E-02
66	GO:0051539: 4 iron, 4 sulfur cluster binding	2.60E-02
67	GO:0004871: signal transducer activity	2.60E-02
68	GO:0004185: serine-type carboxypeptidase activity	2.84E-02
69	GO:0003777: microtubule motor activity	3.77E-02
70	GO:0045735: nutrient reservoir activity	3.95E-02
71	GO:0016746: transferase activity, transferring acyl groups	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0031224: intrinsic component of membrane	0.00E+00
2	GO:0009506: plasmodesma	9.74E-08
3	GO:0005886: plasma membrane	1.30E-07
4	GO:0009505: plant-type cell wall	3.44E-07
5	GO:0046658: anchored component of plasma membrane	2.65E-06
6	GO:0005794: Golgi apparatus	6.94E-05
7	GO:0005618: cell wall	1.99E-04
8	GO:0000139: Golgi membrane	2.04E-04
9	GO:0016021: integral component of membrane	2.09E-04
10	GO:0000786: nucleosome	2.43E-04
11	GO:0031225: anchored component of membrane	2.76E-04
12	GO:0031519: PcG protein complex	4.92E-04
13	GO:0009346: citrate lyase complex	7.04E-04
14	GO:0005775: vacuolar lumen	7.04E-04
15	GO:0048046: apoplast	1.90E-03
16	GO:0000123: histone acetyltransferase complex	2.04E-03
17	GO:0000325: plant-type vacuole	2.32E-03
18	GO:0005576: extracellular region	2.40E-03
19	GO:0000148: 1,3-beta-D-glucan synthase complex	2.69E-03
20	GO:0005677: chromatin silencing complex	2.69E-03
21	GO:0045298: tubulin complex	3.04E-03
22	GO:0005856: cytoskeleton	3.66E-03
23	GO:0005773: vacuole	4.33E-03
24	GO:0030659: cytoplasmic vesicle membrane	5.44E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	5.88E-03
26	GO:0005774: vacuolar membrane	1.72E-02
27	GO:0005874: microtubule	2.00E-02
28	GO:0031902: late endosome membrane	2.68E-02