co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:2000505: regulation of energy homeostasis	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	5.01E-09
7	GO:0046620: regulation of organ growth	5.41E-06
8	GO:0015979: photosynthesis	1.88E-05
9	GO:0080170: hydrogen peroxide transmembrane transport	2.51E-05
10	GO:0009772: photosynthetic electron transport in photosystem II	1.90E-04
11	GO:0034220: ion transmembrane transport	1.96E-04
12	GO:0016042: lipid catabolic process	2.39E-04
13	GO:0006106: fumarate metabolic process	2.57E-04
14	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.57E-04
15	GO:0010205: photoinhibition	4.27E-04
16	GO:0009638: phototropism	4.27E-04
17	GO:0010027: thylakoid membrane organization	4.74E-04
18	GO:0043255: regulation of carbohydrate biosynthetic process	5.68E-04
19	GO:0010115: regulation of abscisic acid biosynthetic process	5.68E-04
20	GO:0001736: establishment of planar polarity	5.68E-04
21	GO:0010024: phytochromobilin biosynthetic process	5.68E-04
22	GO:0015995: chlorophyll biosynthetic process	5.83E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.32E-04
24	GO:0016024: CDP-diacylglycerol biosynthetic process	6.59E-04
25	GO:0009416: response to light stimulus	8.31E-04
26	GO:0010207: photosystem II assembly	8.40E-04
27	GO:0010143: cutin biosynthetic process	8.40E-04
28	GO:0006788: heme oxidation	9.22E-04
29	GO:0015714: phosphoenolpyruvate transport	9.22E-04
30	GO:0090391: granum assembly	9.22E-04
31	GO:0006518: peptide metabolic process	9.22E-04
32	GO:0010167: response to nitrate	9.38E-04
33	GO:0006636: unsaturated fatty acid biosynthetic process	1.04E-03
34	GO:0006833: water transport	1.04E-03
35	GO:0009926: auxin polar transport	1.22E-03
36	GO:0009733: response to auxin	1.26E-03
37	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.32E-03
38	GO:0009800: cinnamic acid biosynthetic process	1.32E-03
39	GO:0009650: UV protection	1.32E-03
40	GO:1901332: negative regulation of lateral root development	1.32E-03
41	GO:0071484: cellular response to light intensity	1.32E-03
42	GO:0016998: cell wall macromolecule catabolic process	1.39E-03
43	GO:0015713: phosphoglycerate transport	1.76E-03
44	GO:0030104: water homeostasis	1.76E-03
45	GO:0010109: regulation of photosynthesis	1.76E-03
46	GO:0045727: positive regulation of translation	1.76E-03
47	GO:0009306: protein secretion	1.80E-03
48	GO:0006857: oligopeptide transport	1.94E-03
49	GO:0042335: cuticle development	2.10E-03
50	GO:0016120: carotene biosynthetic process	2.25E-03
51	GO:0016123: xanthophyll biosynthetic process	2.25E-03
52	GO:0030308: negative regulation of cell growth	2.25E-03
53	GO:0010305: leaf vascular tissue pattern formation	2.26E-03
54	GO:0009735: response to cytokinin	2.75E-03
55	GO:0006559: L-phenylalanine catabolic process	2.77E-03
56	GO:0009913: epidermal cell differentiation	2.77E-03
57	GO:0006655: phosphatidylglycerol biosynthetic process	2.77E-03
58	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.77E-03
59	GO:0010337: regulation of salicylic acid metabolic process	2.77E-03
60	GO:0006561: proline biosynthetic process	2.77E-03
61	GO:0006751: glutathione catabolic process	2.77E-03
62	GO:0042549: photosystem II stabilization	2.77E-03
63	GO:0017148: negative regulation of translation	3.33E-03
64	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.33E-03
65	GO:0010196: nonphotochemical quenching	3.93E-03
66	GO:0010444: guard mother cell differentiation	3.93E-03
67	GO:0009395: phospholipid catabolic process	3.93E-03
68	GO:1900056: negative regulation of leaf senescence	3.93E-03
69	GO:0006869: lipid transport	4.24E-03
70	GO:0042128: nitrate assimilation	4.49E-03
71	GO:0008610: lipid biosynthetic process	4.56E-03
72	GO:0030091: protein repair	4.56E-03
73	GO:0006605: protein targeting	4.56E-03
74	GO:0031540: regulation of anthocyanin biosynthetic process	4.56E-03
75	GO:0055075: potassium ion homeostasis	4.56E-03
76	GO:0006633: fatty acid biosynthetic process	4.95E-03
77	GO:0032544: plastid translation	5.22E-03
78	GO:0010311: lateral root formation	5.52E-03
79	GO:0010206: photosystem II repair	5.92E-03
80	GO:0006865: amino acid transport	6.36E-03
81	GO:0006810: transport	7.10E-03
82	GO:0006032: chitin catabolic process	7.40E-03
83	GO:0009688: abscisic acid biosynthetic process	7.40E-03
84	GO:0048829: root cap development	7.40E-03
85	GO:0009750: response to fructose	8.19E-03
86	GO:0018119: peptidyl-cysteine S-nitrosylation	8.19E-03
87	GO:0048765: root hair cell differentiation	8.19E-03
88	GO:0046856: phosphatidylinositol dephosphorylation	8.19E-03
89	GO:0000038: very long-chain fatty acid metabolic process	8.19E-03
90	GO:0015706: nitrate transport	9.00E-03
91	GO:0010588: cotyledon vascular tissue pattern formation	9.85E-03
92	GO:0010102: lateral root morphogenesis	9.85E-03
93	GO:0009785: blue light signaling pathway	9.85E-03
94	GO:0010628: positive regulation of gene expression	9.85E-03
95	GO:0006108: malate metabolic process	9.85E-03
96	GO:0006006: glucose metabolic process	9.85E-03
97	GO:0010229: inflorescence development	9.85E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	9.85E-03
99	GO:0009725: response to hormone	9.85E-03
100	GO:0019253: reductive pentose-phosphate cycle	1.07E-02
101	GO:0048467: gynoecium development	1.07E-02
102	GO:0071555: cell wall organization	1.10E-02
103	GO:0009825: multidimensional cell growth	1.16E-02
104	GO:0071732: cellular response to nitric oxide	1.16E-02
105	GO:0010030: positive regulation of seed germination	1.16E-02
106	GO:0010053: root epidermal cell differentiation	1.16E-02
107	GO:0010025: wax biosynthetic process	1.25E-02
108	GO:0042023: DNA endoreduplication	1.25E-02
109	GO:0080167: response to karrikin	1.28E-02
110	GO:2000377: regulation of reactive oxygen species metabolic process	1.35E-02
111	GO:0006487: protein N-linked glycosylation	1.35E-02
112	GO:0009651: response to salt stress	1.35E-02
113	GO:0006096: glycolytic process	1.37E-02
114	GO:0007017: microtubule-based process	1.45E-02
115	GO:0019953: sexual reproduction	1.45E-02
116	GO:0031408: oxylipin biosynthetic process	1.55E-02
117	GO:0003333: amino acid transmembrane transport	1.55E-02
118	GO:0048511: rhythmic process	1.55E-02
119	GO:0009624: response to nematode	1.65E-02
120	GO:0030245: cellulose catabolic process	1.65E-02
121	GO:0055085: transmembrane transport	1.73E-02
122	GO:0051726: regulation of cell cycle	1.76E-02
123	GO:0009411: response to UV	1.76E-02
124	GO:0071369: cellular response to ethylene stimulus	1.76E-02
125	GO:0042127: regulation of cell proliferation	1.86E-02
126	GO:0009409: response to cold	1.86E-02
127	GO:0016117: carotenoid biosynthetic process	1.97E-02
128	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.97E-02
129	GO:0080022: primary root development	2.09E-02
130	GO:0010087: phloem or xylem histogenesis	2.09E-02
131	GO:0042631: cellular response to water deprivation	2.09E-02
132	GO:0071472: cellular response to salt stress	2.20E-02
133	GO:0009958: positive gravitropism	2.20E-02
134	GO:0010182: sugar mediated signaling pathway	2.20E-02
135	GO:0015986: ATP synthesis coupled proton transport	2.32E-02
136	GO:0042752: regulation of circadian rhythm	2.32E-02
137	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.56E-02
138	GO:0016032: viral process	2.68E-02
139	GO:0071281: cellular response to iron ion	2.80E-02
140	GO:0007623: circadian rhythm	2.87E-02
141	GO:0045490: pectin catabolic process	2.87E-02
142	GO:0010252: auxin homeostasis	2.93E-02
143	GO:0009734: auxin-activated signaling pathway	3.22E-02
144	GO:0009414: response to water deprivation	3.33E-02
145	GO:0010411: xyloglucan metabolic process	3.73E-02
146	GO:0048573: photoperiodism, flowering	3.73E-02
147	GO:0007165: signal transduction	3.81E-02
148	GO:0030244: cellulose biosynthetic process	4.01E-02
149	GO:0018298: protein-chromophore linkage	4.01E-02
150	GO:0009631: cold acclimation	4.45E-02
151	GO:0009637: response to blue light	4.75E-02
152	GO:0006099: tricarboxylic acid cycle	4.90E-02
153	GO:0007049: cell cycle	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
7	GO:0052689: carboxylic ester hydrolase activity	1.70E-05
8	GO:0016788: hydrolase activity, acting on ester bonds	6.41E-05
9	GO:0005528: FK506 binding	7.91E-05
10	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.57E-04
11	GO:0045485: omega-6 fatty acid desaturase activity	2.57E-04
12	GO:0004333: fumarate hydratase activity	2.57E-04
13	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.57E-04
14	GO:0015250: water channel activity	4.74E-04
15	GO:0016746: transferase activity, transferring acyl groups	4.75E-04
16	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.68E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	5.68E-04
18	GO:0004565: beta-galactosidase activity	7.47E-04
19	GO:0004871: signal transducer activity	8.86E-04
20	GO:0050734: hydroxycinnamoyltransferase activity	9.22E-04
21	GO:0045548: phenylalanine ammonia-lyase activity	9.22E-04
22	GO:0090729: toxin activity	9.22E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.22E-04
24	GO:0016851: magnesium chelatase activity	1.32E-03
25	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.32E-03
26	GO:0043023: ribosomal large subunit binding	1.32E-03
27	GO:0001872: (1->3)-beta-D-glucan binding	1.32E-03
28	GO:0015293: symporter activity	1.41E-03
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.48E-03
30	GO:0030570: pectate lyase activity	1.65E-03
31	GO:0010328: auxin influx transmembrane transporter activity	1.76E-03
32	GO:0052793: pectin acetylesterase activity	1.76E-03
33	GO:0004392: heme oxygenase (decyclizing) activity	1.76E-03
34	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.76E-03
35	GO:0015120: phosphoglycerate transmembrane transporter activity	1.76E-03
36	GO:0010011: auxin binding	1.76E-03
37	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.76E-03
38	GO:0035673: oligopeptide transmembrane transporter activity	2.77E-03
39	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.77E-03
40	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.77E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.77E-03
42	GO:0004629: phospholipase C activity	2.77E-03
43	GO:0051753: mannan synthase activity	3.33E-03
44	GO:0004017: adenylate kinase activity	3.33E-03
45	GO:0004435: phosphatidylinositol phospholipase C activity	3.33E-03
46	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.33E-03
47	GO:0016791: phosphatase activity	3.38E-03
48	GO:0030247: polysaccharide binding	4.74E-03
49	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.22E-03
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.25E-03
51	GO:0016491: oxidoreductase activity	5.74E-03
52	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.79E-03
53	GO:0015112: nitrate transmembrane transporter activity	6.64E-03
54	GO:0004568: chitinase activity	7.40E-03
55	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.58E-03
56	GO:0015198: oligopeptide transporter activity	9.00E-03
57	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	9.00E-03
58	GO:0008081: phosphoric diester hydrolase activity	9.85E-03
59	GO:0004022: alcohol dehydrogenase (NAD) activity	9.85E-03
60	GO:0008266: poly(U) RNA binding	1.07E-02
61	GO:0008146: sulfotransferase activity	1.16E-02
62	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.25E-02
63	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.25E-02
64	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.25E-02
65	GO:0015171: amino acid transmembrane transporter activity	1.29E-02
66	GO:0005215: transporter activity	1.31E-02
67	GO:0004176: ATP-dependent peptidase activity	1.55E-02
68	GO:0008810: cellulase activity	1.76E-02
69	GO:0022891: substrate-specific transmembrane transporter activity	1.76E-02
70	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.84E-02
71	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.20E-02
72	GO:0016829: lyase activity	2.25E-02
73	GO:0050662: coenzyme binding	2.32E-02
74	GO:0019901: protein kinase binding	2.43E-02
75	GO:0004872: receptor activity	2.43E-02
76	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.56E-02
77	GO:0004518: nuclease activity	2.68E-02
78	GO:0005200: structural constituent of cytoskeleton	3.06E-02
79	GO:0008289: lipid binding	3.17E-02
80	GO:0016168: chlorophyll binding	3.46E-02
81	GO:0008375: acetylglucosaminyltransferase activity	3.59E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.73E-02
83	GO:0004222: metalloendopeptidase activity	4.30E-02
84	GO:0003993: acid phosphatase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	8.54E-13
3	GO:0009534: chloroplast thylakoid	3.83E-12
4	GO:0009535: chloroplast thylakoid membrane	4.56E-12
5	GO:0009579: thylakoid	7.14E-10
6	GO:0009543: chloroplast thylakoid lumen	9.49E-10
7	GO:0009941: chloroplast envelope	3.03E-06
8	GO:0005886: plasma membrane	9.55E-06
9	GO:0009654: photosystem II oxygen evolving complex	9.22E-05
10	GO:0031977: thylakoid lumen	1.34E-04
11	GO:0009515: granal stacked thylakoid	2.57E-04
12	GO:0045239: tricarboxylic acid cycle enzyme complex	2.57E-04
13	GO:0043674: columella	2.57E-04
14	GO:0019898: extrinsic component of membrane	2.66E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.60E-04
16	GO:0030093: chloroplast photosystem I	5.68E-04
17	GO:0031969: chloroplast membrane	5.95E-04
18	GO:0030095: chloroplast photosystem II	8.40E-04
19	GO:0010007: magnesium chelatase complex	9.22E-04
20	GO:0015630: microtubule cytoskeleton	1.32E-03
21	GO:0048046: apoplast	2.25E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.77E-03
23	GO:0016021: integral component of membrane	3.21E-03
24	GO:0042807: central vacuole	3.93E-03
25	GO:0009986: cell surface	3.93E-03
26	GO:0031225: anchored component of membrane	7.01E-03
27	GO:0005618: cell wall	7.46E-03
28	GO:0005887: integral component of plasma membrane	8.07E-03
29	GO:0009508: plastid chromosome	9.85E-03
30	GO:0009570: chloroplast stroma	1.00E-02
31	GO:0009706: chloroplast inner membrane	1.65E-02
32	GO:0010287: plastoglobule	1.97E-02
33	GO:0009523: photosystem II	2.43E-02
34	GO:0009295: nucleoid	3.06E-02
35	GO:0010319: stromule	3.06E-02
36	GO:0016020: membrane	3.06E-02
37	GO:0046658: anchored component of plasma membrane	3.79E-02
38	GO:0000151: ubiquitin ligase complex	4.01E-02
39	GO:0009505: plant-type cell wall	4.77E-02