co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009773: photosynthetic electron transport in photosystem I	1.71E-10
2	GO:0090391: granum assembly	2.29E-06
3	GO:0010027: thylakoid membrane organization	3.05E-06
4	GO:0080170: hydrogen peroxide transmembrane transport	5.42E-06
5	GO:0015979: photosynthesis	5.61E-06
6	GO:0016120: carotene biosynthetic process	1.69E-05
7	GO:0009772: photosynthetic electron transport in photosystem II	4.92E-05
8	GO:0010196: nonphotochemical quenching	4.92E-05
9	GO:0071277: cellular response to calcium ion	1.08E-04
10	GO:0015995: chlorophyll biosynthetic process	1.13E-04
11	GO:0010205: photoinhibition	1.21E-04
12	GO:0016024: CDP-diacylglycerol biosynthetic process	1.96E-04
13	GO:0001736: establishment of planar polarity	2.52E-04
14	GO:0006729: tetrahydrobiopterin biosynthetic process	2.52E-04
15	GO:0010024: phytochromobilin biosynthetic process	2.52E-04
16	GO:0043255: regulation of carbohydrate biosynthetic process	2.52E-04
17	GO:0006636: unsaturated fatty acid biosynthetic process	3.21E-04
18	GO:0006788: heme oxidation	4.19E-04
19	GO:0015714: phosphoenolpyruvate transport	4.19E-04
20	GO:0006518: peptide metabolic process	4.19E-04
21	GO:0009306: protein secretion	5.60E-04
22	GO:0034220: ion transmembrane transport	6.53E-04
23	GO:0045727: positive regulation of translation	7.98E-04
24	GO:0015713: phosphoglycerate transport	7.98E-04
25	GO:0030104: water homeostasis	7.98E-04
26	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.59E-04
27	GO:0010236: plastoquinone biosynthetic process	1.01E-03
28	GO:0030308: negative regulation of cell growth	1.01E-03
29	GO:0042549: photosystem II stabilization	1.23E-03
30	GO:0006655: phosphatidylglycerol biosynthetic process	1.23E-03
31	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.23E-03
32	GO:0010337: regulation of salicylic acid metabolic process	1.23E-03
33	GO:0010189: vitamin E biosynthetic process	1.47E-03
34	GO:0009735: response to cytokinin	1.64E-03
35	GO:0009395: phospholipid catabolic process	1.73E-03
36	GO:1900057: positive regulation of leaf senescence	1.73E-03
37	GO:0010444: guard mother cell differentiation	1.73E-03
38	GO:0006605: protein targeting	2.00E-03
39	GO:0009704: de-etiolation	2.00E-03
40	GO:0042255: ribosome assembly	2.00E-03
41	GO:0030091: protein repair	2.00E-03
42	GO:0042254: ribosome biogenesis	2.11E-03
43	GO:0032544: plastid translation	2.28E-03
44	GO:0045893: positive regulation of transcription, DNA-templated	2.32E-03
45	GO:0090333: regulation of stomatal closure	2.57E-03
46	GO:0048829: root cap development	3.20E-03
47	GO:0006032: chitin catabolic process	3.20E-03
48	GO:0018119: peptidyl-cysteine S-nitrosylation	3.53E-03
49	GO:0048765: root hair cell differentiation	3.53E-03
50	GO:0006096: glycolytic process	4.05E-03
51	GO:0006006: glucose metabolic process	4.23E-03
52	GO:0009718: anthocyanin-containing compound biosynthetic process	4.23E-03
53	GO:0009725: response to hormone	4.23E-03
54	GO:0010628: positive regulation of gene expression	4.23E-03
55	GO:0010143: cutin biosynthetic process	4.59E-03
56	GO:0019253: reductive pentose-phosphate cycle	4.59E-03
57	GO:0071732: cellular response to nitric oxide	4.96E-03
58	GO:0010053: root epidermal cell differentiation	4.96E-03
59	GO:0009825: multidimensional cell growth	4.96E-03
60	GO:0010167: response to nitrate	4.96E-03
61	GO:0006833: water transport	5.35E-03
62	GO:0007017: microtubule-based process	6.15E-03
63	GO:0003333: amino acid transmembrane transport	6.56E-03
64	GO:0016998: cell wall macromolecule catabolic process	6.56E-03
65	GO:0031408: oxylipin biosynthetic process	6.56E-03
66	GO:0035428: hexose transmembrane transport	6.99E-03
67	GO:0071369: cellular response to ethylene stimulus	7.42E-03
68	GO:0006633: fatty acid biosynthetic process	7.64E-03
69	GO:0042127: regulation of cell proliferation	7.87E-03
70	GO:0016117: carotenoid biosynthetic process	8.32E-03
71	GO:0045490: pectin catabolic process	8.39E-03
72	GO:0046323: glucose import	9.26E-03
73	GO:0009958: positive gravitropism	9.26E-03
74	GO:0015986: ATP synthesis coupled proton transport	9.74E-03
75	GO:0006810: transport	9.82E-03
76	GO:0032502: developmental process	1.12E-02
77	GO:0071281: cellular response to iron ion	1.18E-02
78	GO:0009658: chloroplast organization	1.30E-02
79	GO:0048573: photoperiodism, flowering	1.56E-02
80	GO:0018298: protein-chromophore linkage	1.68E-02
81	GO:0030244: cellulose biosynthetic process	1.68E-02
82	GO:0010311: lateral root formation	1.74E-02
83	GO:0006865: amino acid transport	1.92E-02
84	GO:0009637: response to blue light	1.99E-02
85	GO:0055114: oxidation-reduction process	2.03E-02
86	GO:0006412: translation	2.25E-02
87	GO:0042742: defense response to bacterium	2.25E-02
88	GO:0006979: response to oxidative stress	2.27E-02
89	GO:0032259: methylation	2.29E-02
90	GO:0016042: lipid catabolic process	2.32E-02
91	GO:0009926: auxin polar transport	2.38E-02
92	GO:0009744: response to sucrose	2.38E-02
93	GO:0009644: response to high light intensity	2.52E-02
94	GO:0009809: lignin biosynthetic process	2.94E-02
95	GO:0006364: rRNA processing	2.94E-02
96	GO:0009734: auxin-activated signaling pathway	3.36E-02
97	GO:0009651: response to salt stress	3.36E-02
98	GO:0048316: seed development	3.39E-02
99	GO:0009624: response to nematode	3.78E-02
100	GO:0051726: regulation of cell cycle	3.94E-02
101	GO:0009742: brassinosteroid mediated signaling pathway	3.94E-02
102	GO:0009416: response to light stimulus	4.23E-02
103	GO:0042744: hydrogen peroxide catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0045436: lycopene beta cyclase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
7	GO:0019843: rRNA binding	5.05E-06
8	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.08E-04
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.08E-04
10	GO:0045485: omega-6 fatty acid desaturase activity	1.08E-04
11	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.08E-04
12	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.52E-04
13	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.19E-04
14	GO:0030570: pectate lyase activity	5.16E-04
15	GO:0016851: magnesium chelatase activity	6.01E-04
16	GO:0004392: heme oxygenase (decyclizing) activity	7.98E-04
17	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	7.98E-04
18	GO:0015120: phosphoglycerate transmembrane transporter activity	7.98E-04
19	GO:0010011: auxin binding	7.98E-04
20	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	7.98E-04
21	GO:0010328: auxin influx transmembrane transporter activity	7.98E-04
22	GO:0015250: water channel activity	1.22E-03
23	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.23E-03
24	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.23E-03
25	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.47E-03
26	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.58E-03
27	GO:0016788: hydrolase activity, acting on ester bonds	2.11E-03
28	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.28E-03
29	GO:0004568: chitinase activity	3.20E-03
30	GO:0003690: double-stranded DNA binding	3.55E-03
31	GO:0008266: poly(U) RNA binding	4.59E-03
32	GO:0008131: primary amine oxidase activity	4.59E-03
33	GO:0008146: sulfotransferase activity	4.96E-03
34	GO:0016746: transferase activity, transferring acyl groups	5.01E-03
35	GO:0005528: FK506 binding	5.75E-03
36	GO:0004176: ATP-dependent peptidase activity	6.56E-03
37	GO:0016829: lyase activity	6.58E-03
38	GO:0022891: substrate-specific transmembrane transporter activity	7.42E-03
39	GO:0003727: single-stranded RNA binding	7.87E-03
40	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.26E-03
41	GO:0005355: glucose transmembrane transporter activity	9.74E-03
42	GO:0050662: coenzyme binding	9.74E-03
43	GO:0004872: receptor activity	1.02E-02
44	GO:0016791: phosphatase activity	1.23E-02
45	GO:0005200: structural constituent of cytoskeleton	1.28E-02
46	GO:0016168: chlorophyll binding	1.45E-02
47	GO:0003735: structural constituent of ribosome	1.55E-02
48	GO:0030247: polysaccharide binding	1.56E-02
49	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.62E-02
50	GO:0052689: carboxylic ester hydrolase activity	1.79E-02
51	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.80E-02
52	GO:0004222: metalloendopeptidase activity	1.80E-02
53	GO:0004871: signal transducer activity	2.03E-02
54	GO:0003993: acid phosphatase activity	2.05E-02
55	GO:0050661: NADP binding	2.18E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	2.52E-02
57	GO:0015293: symporter activity	2.59E-02
58	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.66E-02
59	GO:0051287: NAD binding	2.73E-02
60	GO:0015171: amino acid transmembrane transporter activity	3.17E-02
61	GO:0031625: ubiquitin protein ligase binding	3.17E-02
62	GO:0003779: actin binding	3.70E-02
63	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0009507: chloroplast	6.02E-24
4	GO:0009535: chloroplast thylakoid membrane	1.28E-19
5	GO:0009941: chloroplast envelope	6.95E-12
6	GO:0009534: chloroplast thylakoid	7.52E-12
7	GO:0009579: thylakoid	1.52E-10
8	GO:0031969: chloroplast membrane	3.81E-06
9	GO:0009543: chloroplast thylakoid lumen	8.51E-05
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.00E-04
11	GO:0043674: columella	1.08E-04
12	GO:0030093: chloroplast photosystem I	2.52E-04
13	GO:0030095: chloroplast photosystem II	2.55E-04
14	GO:0009570: chloroplast stroma	4.04E-04
15	GO:0010007: magnesium chelatase complex	4.19E-04
16	GO:0016021: integral component of membrane	5.49E-04
17	GO:0015630: microtubule cytoskeleton	6.01E-04
18	GO:0009523: photosystem II	8.05E-04
19	GO:0009295: nucleoid	1.09E-03
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.23E-03
21	GO:0005840: ribosome	1.39E-03
22	GO:0016020: membrane	1.61E-03
23	GO:0009986: cell surface	1.73E-03
24	GO:0042807: central vacuole	1.73E-03
25	GO:0031977: thylakoid lumen	2.36E-03
26	GO:0008180: COP9 signalosome	2.57E-03
27	GO:0009508: plastid chromosome	4.23E-03
28	GO:0009706: chloroplast inner membrane	4.86E-03
29	GO:0010287: plastoglobule	5.76E-03
30	GO:0009654: photosystem II oxygen evolving complex	6.15E-03
31	GO:0019898: extrinsic component of membrane	1.02E-02
32	GO:0046658: anchored component of plasma membrane	1.11E-02
33	GO:0048046: apoplast	1.22E-02
34	GO:0010319: stromule	1.28E-02
35	GO:0019005: SCF ubiquitin ligase complex	1.68E-02
36	GO:0000502: proteasome complex	2.94E-02
37	GO:0005887: integral component of plasma membrane	3.24E-02
38	GO:0005618: cell wall	4.27E-02