co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0070584: mitochondrion morphogenesis	0.00E+00
6	GO:0015827: tryptophan transport	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0009877: nodulation	0.00E+00
9	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
10	GO:0046677: response to antibiotic	0.00E+00
11	GO:0015810: aspartate transport	0.00E+00
12	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
13	GO:0090279: regulation of calcium ion import	0.00E+00
14	GO:0009768: photosynthesis, light harvesting in photosystem I	2.86E-22
15	GO:0015979: photosynthesis	3.51E-21
16	GO:0018298: protein-chromophore linkage	3.48E-14
17	GO:0009645: response to low light intensity stimulus	1.55E-11
18	GO:0010114: response to red light	2.23E-11
19	GO:0009644: response to high light intensity	1.48E-09
20	GO:0015995: chlorophyll biosynthetic process	6.55E-09
21	GO:0010218: response to far red light	1.27E-08
22	GO:0009637: response to blue light	7.88E-07
23	GO:0009769: photosynthesis, light harvesting in photosystem II	8.82E-07
24	GO:0009765: photosynthesis, light harvesting	1.75E-05
25	GO:0009416: response to light stimulus	2.09E-05
26	GO:0010196: nonphotochemical quenching	8.05E-05
27	GO:0015812: gamma-aminobutyric acid transport	1.48E-04
28	GO:0007623: circadian rhythm	3.10E-04
29	GO:0009409: response to cold	3.20E-04
30	GO:0071497: cellular response to freezing	3.38E-04
31	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.38E-04
32	GO:0051262: protein tetramerization	3.38E-04
33	GO:0051170: nuclear import	3.38E-04
34	GO:0055114: oxidation-reduction process	4.81E-04
35	GO:0035436: triose phosphate transmembrane transport	5.54E-04
36	GO:1902448: positive regulation of shade avoidance	5.54E-04
37	GO:0006598: polyamine catabolic process	5.54E-04
38	GO:0048511: rhythmic process	6.55E-04
39	GO:0009269: response to desiccation	6.55E-04
40	GO:0010017: red or far-red light signaling pathway	7.15E-04
41	GO:0050482: arachidonic acid secretion	7.93E-04
42	GO:0044211: CTP salvage	7.93E-04
43	GO:0031936: negative regulation of chromatin silencing	7.93E-04
44	GO:0080167: response to karrikin	8.47E-04
45	GO:0006351: transcription, DNA-templated	9.08E-04
46	GO:0042938: dipeptide transport	1.05E-03
47	GO:0009755: hormone-mediated signaling pathway	1.05E-03
48	GO:1901141: regulation of lignin biosynthetic process	1.05E-03
49	GO:2000306: positive regulation of photomorphogenesis	1.05E-03
50	GO:0010600: regulation of auxin biosynthetic process	1.05E-03
51	GO:0015713: phosphoglycerate transport	1.05E-03
52	GO:0044206: UMP salvage	1.05E-03
53	GO:0030104: water homeostasis	1.05E-03
54	GO:0016123: xanthophyll biosynthetic process	1.33E-03
55	GO:0010438: cellular response to sulfur starvation	1.33E-03
56	GO:0034052: positive regulation of plant-type hypersensitive response	1.33E-03
57	GO:0043097: pyrimidine nucleoside salvage	1.33E-03
58	GO:0009635: response to herbicide	1.63E-03
59	GO:0009643: photosynthetic acclimation	1.63E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.63E-03
61	GO:0045962: positive regulation of development, heterochronic	1.63E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	1.63E-03
63	GO:0010189: vitamin E biosynthetic process	1.96E-03
64	GO:0071470: cellular response to osmotic stress	1.96E-03
65	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.96E-03
66	GO:0031930: mitochondria-nucleus signaling pathway	1.96E-03
67	GO:0006355: regulation of transcription, DNA-templated	2.17E-03
68	GO:0010161: red light signaling pathway	2.30E-03
69	GO:1900056: negative regulation of leaf senescence	2.30E-03
70	GO:0080111: DNA demethylation	2.30E-03
71	GO:0000160: phosphorelay signal transduction system	2.52E-03
72	GO:0009704: de-etiolation	2.66E-03
73	GO:2000070: regulation of response to water deprivation	2.66E-03
74	GO:0006644: phospholipid metabolic process	2.66E-03
75	GO:0010928: regulation of auxin mediated signaling pathway	2.66E-03
76	GO:0009819: drought recovery	2.66E-03
77	GO:0010439: regulation of glucosinolate biosynthetic process	2.66E-03
78	GO:0043068: positive regulation of programmed cell death	2.66E-03
79	GO:0009631: cold acclimation	2.77E-03
80	GO:0010119: regulation of stomatal movement	2.77E-03
81	GO:0010099: regulation of photomorphogenesis	3.04E-03
82	GO:0007186: G-protein coupled receptor signaling pathway	3.04E-03
83	GO:0010206: photosystem II repair	3.44E-03
84	GO:0090333: regulation of stomatal closure	3.44E-03
85	GO:0009658: chloroplast organization	3.56E-03
86	GO:0009611: response to wounding	3.75E-03
87	GO:1900865: chloroplast RNA modification	3.86E-03
88	GO:0010380: regulation of chlorophyll biosynthetic process	3.86E-03
89	GO:0009640: photomorphogenesis	3.90E-03
90	GO:0009723: response to ethylene	4.28E-03
91	GO:0009688: abscisic acid biosynthetic process	4.29E-03
92	GO:0009641: shade avoidance	4.29E-03
93	GO:0006949: syncytium formation	4.29E-03
94	GO:0018119: peptidyl-cysteine S-nitrosylation	4.73E-03
95	GO:0030148: sphingolipid biosynthetic process	4.73E-03
96	GO:0046856: phosphatidylinositol dephosphorylation	4.73E-03
97	GO:0009682: induced systemic resistance	4.73E-03
98	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.20E-03
99	GO:0044550: secondary metabolite biosynthetic process	5.20E-03
100	GO:0015706: nitrate transport	5.20E-03
101	GO:0018107: peptidyl-threonine phosphorylation	5.68E-03
102	GO:0009718: anthocyanin-containing compound biosynthetic process	5.68E-03
103	GO:0009767: photosynthetic electron transport chain	5.68E-03
104	GO:0009887: animal organ morphogenesis	6.17E-03
105	GO:0009266: response to temperature stimulus	6.17E-03
106	GO:0010207: photosystem II assembly	6.17E-03
107	GO:0090351: seedling development	6.67E-03
108	GO:0006874: cellular calcium ion homeostasis	8.29E-03
109	GO:0003333: amino acid transmembrane transport	8.85E-03
110	GO:0009814: defense response, incompatible interaction	9.43E-03
111	GO:0009625: response to insect	1.00E-02
112	GO:0071215: cellular response to abscisic acid stimulus	1.00E-02
113	GO:0009686: gibberellin biosynthetic process	1.00E-02
114	GO:0009414: response to water deprivation	1.02E-02
115	GO:0045492: xylan biosynthetic process	1.06E-02
116	GO:0070417: cellular response to cold	1.13E-02
117	GO:0010182: sugar mediated signaling pathway	1.25E-02
118	GO:0006814: sodium ion transport	1.32E-02
119	GO:0010228: vegetative to reproductive phase transition of meristem	1.35E-02
120	GO:0009735: response to cytokinin	1.42E-02
121	GO:0010193: response to ozone	1.45E-02
122	GO:0009739: response to gibberellin	1.45E-02
123	GO:0000302: response to reactive oxygen species	1.45E-02
124	GO:1901657: glycosyl compound metabolic process	1.59E-02
125	GO:0009828: plant-type cell wall loosening	1.67E-02
126	GO:0016126: sterol biosynthetic process	1.89E-02
127	GO:0048573: photoperiodism, flowering	2.12E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	2.12E-02
129	GO:0006970: response to osmotic stress	2.16E-02
130	GO:0016311: dephosphorylation	2.20E-02
131	GO:0009651: response to salt stress	2.24E-02
132	GO:0006811: ion transport	2.45E-02
133	GO:0009910: negative regulation of flower development	2.53E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-02
135	GO:0006865: amino acid transport	2.61E-02
136	GO:0009867: jasmonic acid mediated signaling pathway	2.70E-02
137	GO:0034599: cellular response to oxidative stress	2.79E-02
138	GO:0045892: negative regulation of transcription, DNA-templated	3.03E-02
139	GO:0042542: response to hydrogen peroxide	3.14E-02
140	GO:0051707: response to other organism	3.23E-02
141	GO:0008643: carbohydrate transport	3.42E-02
142	GO:0009965: leaf morphogenesis	3.51E-02
143	GO:0032259: methylation	3.52E-02
144	GO:0006629: lipid metabolic process	3.67E-02
145	GO:0006812: cation transport	3.80E-02
146	GO:0009664: plant-type cell wall organization	3.80E-02
147	GO:0042538: hyperosmotic salinity response	3.80E-02
148	GO:0009753: response to jasmonic acid	3.93E-02
149	GO:0009585: red, far-red light phototransduction	4.00E-02
150	GO:0010224: response to UV-B	4.10E-02
151	GO:0006857: oligopeptide transport	4.20E-02
152	GO:0009909: regulation of flower development	4.30E-02
153	GO:0043086: negative regulation of catalytic activity	4.50E-02
154	GO:0009626: plant-type hypersensitive response	4.71E-02
155	GO:0009740: gibberellic acid mediated signaling pathway	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
2	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
6	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
7	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
8	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0045550: geranylgeranyl reductase activity	0.00E+00
12	GO:0080082: esculin beta-glucosidase activity	0.00E+00
13	GO:0031409: pigment binding	2.04E-20
14	GO:0016168: chlorophyll binding	1.24E-16
15	GO:0046872: metal ion binding	5.00E-05
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.48E-04
17	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.48E-04
18	GO:0005227: calcium activated cation channel activity	1.48E-04
19	GO:0080079: cellobiose glucosidase activity	1.48E-04
20	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.48E-04
21	GO:0052631: sphingolipid delta-8 desaturase activity	1.48E-04
22	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.48E-04
23	GO:0015297: antiporter activity	2.87E-04
24	GO:0015180: L-alanine transmembrane transporter activity	3.38E-04
25	GO:0015172: acidic amino acid transmembrane transporter activity	3.38E-04
26	GO:0016630: protochlorophyllide reductase activity	3.38E-04
27	GO:0071917: triose-phosphate transmembrane transporter activity	5.54E-04
28	GO:0046592: polyamine oxidase activity	5.54E-04
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.54E-04
30	GO:0003677: DNA binding	6.99E-04
31	GO:0015171: amino acid transmembrane transporter activity	7.58E-04
32	GO:0015189: L-lysine transmembrane transporter activity	7.93E-04
33	GO:0015175: neutral amino acid transmembrane transporter activity	7.93E-04
34	GO:0015181: arginine transmembrane transporter activity	7.93E-04
35	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.93E-04
36	GO:0016851: magnesium chelatase activity	7.93E-04
37	GO:0015120: phosphoglycerate transmembrane transporter activity	1.05E-03
38	GO:0004845: uracil phosphoribosyltransferase activity	1.05E-03
39	GO:0042936: dipeptide transporter activity	1.05E-03
40	GO:0005313: L-glutamate transmembrane transporter activity	1.05E-03
41	GO:0004506: squalene monooxygenase activity	1.05E-03
42	GO:0004930: G-protein coupled receptor activity	1.05E-03
43	GO:0051538: 3 iron, 4 sulfur cluster binding	1.33E-03
44	GO:0004623: phospholipase A2 activity	1.33E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.41E-03
46	GO:0000156: phosphorelay response regulator activity	1.46E-03
47	GO:0004462: lactoylglutathione lyase activity	1.63E-03
48	GO:0005515: protein binding	1.67E-03
49	GO:0004602: glutathione peroxidase activity	1.96E-03
50	GO:0005261: cation channel activity	1.96E-03
51	GO:0004849: uridine kinase activity	1.96E-03
52	GO:0003993: acid phosphatase activity	3.17E-03
53	GO:0071949: FAD binding	3.44E-03
54	GO:0000989: transcription factor activity, transcription factor binding	3.44E-03
55	GO:0042393: histone binding	3.45E-03
56	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.83E-03
57	GO:0051537: 2 iron, 2 sulfur cluster binding	4.22E-03
58	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.29E-03
59	GO:0015293: symporter activity	4.38E-03
60	GO:0047372: acylglycerol lipase activity	4.73E-03
61	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.20E-03
62	GO:0005315: inorganic phosphate transmembrane transporter activity	5.68E-03
63	GO:0004022: alcohol dehydrogenase (NAD) activity	5.68E-03
64	GO:0008131: primary amine oxidase activity	6.17E-03
65	GO:0004970: ionotropic glutamate receptor activity	6.67E-03
66	GO:0004190: aspartic-type endopeptidase activity	6.67E-03
67	GO:0005217: intracellular ligand-gated ion channel activity	6.67E-03
68	GO:0003712: transcription cofactor activity	6.67E-03
69	GO:0005216: ion channel activity	8.29E-03
70	GO:0004707: MAP kinase activity	8.85E-03
71	GO:0005506: iron ion binding	1.03E-02
72	GO:0008514: organic anion transmembrane transporter activity	1.06E-02
73	GO:0048038: quinone binding	1.45E-02
74	GO:0008168: methyltransferase activity	1.93E-02
75	GO:0102483: scopolin beta-glucosidase activity	2.12E-02
76	GO:0004497: monooxygenase activity	2.49E-02
77	GO:0008422: beta-glucosidase activity	2.87E-02
78	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.22E-02
79	GO:0016787: hydrolase activity	3.29E-02
80	GO:0005198: structural molecule activity	3.51E-02
81	GO:0004519: endonuclease activity	3.99E-02
82	GO:0005215: transporter activity	4.34E-02
83	GO:0016874: ligase activity	4.92E-02
84	GO:0022857: transmembrane transporter activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	3.38E-24
4	GO:0009534: chloroplast thylakoid	2.16E-23
5	GO:0010287: plastoglobule	3.40E-18
6	GO:0009522: photosystem I	4.69E-18
7	GO:0009579: thylakoid	1.73E-17
8	GO:0030076: light-harvesting complex	6.90E-16
9	GO:0009941: chloroplast envelope	1.20E-15
10	GO:0009507: chloroplast	3.82E-11
11	GO:0016021: integral component of membrane	2.84E-08
12	GO:0009523: photosystem II	5.74E-08
13	GO:0009517: PSII associated light-harvesting complex II	6.78E-08
14	GO:0009538: photosystem I reaction center	1.36E-06
15	GO:0016020: membrane	3.82E-06
16	GO:0042651: thylakoid membrane	2.74E-05
17	GO:0030095: chloroplast photosystem II	3.92E-04
18	GO:0010007: magnesium chelatase complex	5.54E-04
19	GO:0009706: chloroplast inner membrane	1.03E-03
20	GO:0030660: Golgi-associated vesicle membrane	1.05E-03
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.05E-03
22	GO:0009543: chloroplast thylakoid lumen	1.36E-03
23	GO:0030127: COPII vesicle coat	1.63E-03
24	GO:0009533: chloroplast stromal thylakoid	2.30E-03
25	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.66E-03
26	GO:0031977: thylakoid lumen	3.60E-03
27	GO:0031969: chloroplast membrane	4.68E-03
28	GO:0005765: lysosomal membrane	4.73E-03
29	GO:0031966: mitochondrial membrane	4.89E-03
30	GO:0009654: photosystem II oxygen evolving complex	8.29E-03
31	GO:0031410: cytoplasmic vesicle	9.43E-03
32	GO:0009570: chloroplast stroma	1.02E-02
33	GO:0019898: extrinsic component of membrane	1.39E-02
34	GO:0009707: chloroplast outer membrane	2.28E-02
35	GO:0016607: nuclear speck	4.61E-02
36	GO:0010008: endosome membrane	4.61E-02