co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010203: response to very low fluence red light stimulus	0.00E+00
2	GO:0019450: L-cysteine catabolic process to pyruvate	0.00E+00
3	GO:0010213: non-photoreactive DNA repair	8.12E-06
4	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	8.12E-06
5	GO:1903648: positive regulation of chlorophyll catabolic process	8.12E-06
6	GO:0034063: stress granule assembly	8.12E-06
7	GO:0010603: regulation of cytoplasmic mRNA processing body assembly	8.12E-06
8	GO:0017006: protein-tetrapyrrole linkage	3.99E-05
9	GO:0009584: detection of visible light	6.14E-05
10	GO:0000380: alternative mRNA splicing, via spliceosome	1.12E-04
11	GO:0017148: negative regulation of translation	1.71E-04
12	GO:1900057: positive regulation of leaf senescence	2.04E-04
13	GO:0010161: red light signaling pathway	2.04E-04
14	GO:0070413: trehalose metabolism in response to stress	2.37E-04
15	GO:0046685: response to arsenic-containing substance	3.07E-04
16	GO:0009638: phototropism	3.43E-04
17	GO:0050826: response to freezing	4.98E-04
18	GO:0007034: vacuolar transport	5.39E-04
19	GO:0006289: nucleotide-excision repair	6.66E-04
20	GO:0005992: trehalose biosynthetic process	6.66E-04
21	GO:0016192: vesicle-mediated transport	6.80E-04
22	GO:0061025: membrane fusion	1.08E-03
23	GO:0009630: gravitropism	1.23E-03
24	GO:0019760: glucosinolate metabolic process	1.34E-03
25	GO:0006914: autophagy	1.34E-03
26	GO:0042128: nitrate assimilation	1.62E-03
27	GO:0009817: defense response to fungus, incompatible interaction	1.79E-03
28	GO:0018298: protein-chromophore linkage	1.79E-03
29	GO:0045893: positive regulation of transcription, DNA-templated	1.85E-03
30	GO:0010218: response to far red light	1.91E-03
31	GO:0009640: photomorphogenesis	2.49E-03
32	GO:0008643: carbohydrate transport	2.62E-03
33	GO:0009585: red, far-red light phototransduction	3.04E-03
34	GO:0010224: response to UV-B	3.11E-03
35	GO:0015031: protein transport	4.10E-03
36	GO:0006633: fatty acid biosynthetic process	5.26E-03
37	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	7.20E-03
38	GO:0006886: intracellular protein transport	1.02E-02
39	GO:0006281: DNA repair	1.16E-02
40	GO:0006629: lipid metabolic process	1.16E-02
41	GO:0009408: response to heat	1.16E-02
42	GO:0006397: mRNA processing	1.20E-02
43	GO:0009738: abscisic acid-activated signaling pathway	1.70E-02
44	GO:0055085: transmembrane transport	2.06E-02
45	GO:0006511: ubiquitin-dependent protein catabolic process	2.17E-02
46	GO:0009414: response to water deprivation	2.83E-02
47	GO:0009409: response to cold	3.58E-02
48	GO:0005975: carbohydrate metabolic process	3.88E-02
49	GO:0009737: response to abscisic acid	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0080146: L-cysteine desulfhydrase activity	0.00E+00
2	GO:0030275: LRR domain binding	8.12E-06
3	GO:0031516: far-red light photoreceptor activity	8.12E-06
4	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.19E-05
5	GO:0009883: red or far-red light photoreceptor activity	2.19E-05
6	GO:0008020: G-protein coupled photoreceptor activity	3.99E-05
7	GO:0005483: soluble NSF attachment protein activity	3.99E-05
8	GO:0019905: syntaxin binding	8.58E-05
9	GO:0019887: protein kinase regulator activity	1.71E-04
10	GO:0004673: protein histidine kinase activity	3.81E-04
11	GO:0004805: trehalose-phosphatase activity	3.81E-04
12	GO:0000976: transcription regulatory region sequence-specific DNA binding	4.58E-04
13	GO:0000155: phosphorelay sensor kinase activity	4.98E-04
14	GO:0043130: ubiquitin binding	6.66E-04
15	GO:0022891: substrate-specific transmembrane transporter activity	8.44E-04
16	GO:0004527: exonuclease activity	1.03E-03
17	GO:0004518: nuclease activity	1.23E-03
18	GO:0016791: phosphatase activity	1.34E-03
19	GO:0004806: triglyceride lipase activity	1.67E-03
20	GO:0003697: single-stranded DNA binding	2.10E-03
21	GO:0005515: protein binding	3.55E-03
22	GO:0003729: mRNA binding	4.79E-03
23	GO:0015144: carbohydrate transmembrane transporter activity	5.09E-03
24	GO:0042802: identical protein binding	6.62E-03
25	GO:0004871: signal transducer activity	1.03E-02
26	GO:0042803: protein homodimerization activity	1.03E-02
27	GO:0004519: endonuclease activity	1.23E-02
28	GO:0043565: sequence-specific DNA binding	1.65E-02
29	GO:0016740: transferase activity	2.01E-02
30	GO:0005516: calmodulin binding	2.33E-02
31	GO:0044212: transcription regulatory region DNA binding	2.88E-02
32	GO:0003824: catalytic activity	3.08E-02
33	GO:0005215: transporter activity	3.10E-02
34	GO:0004842: ubiquitin-protein transferase activity	3.63E-02
35	GO:0004672: protein kinase activity	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0000815: ESCRT III complex	1.71E-04
2	GO:0034045: pre-autophagosomal structure membrane	2.71E-04
3	GO:0010494: cytoplasmic stress granule	3.07E-04
4	GO:0016604: nuclear body	3.43E-04
5	GO:0031201: SNARE complex	2.36E-03
6	GO:0016607: nuclear speck	3.48E-03
7	GO:0005834: heterotrimeric G-protein complex	3.56E-03
8	GO:0005737: cytoplasm	3.97E-03
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.10E-03
10	GO:0005774: vacuolar membrane	1.11E-02
11	GO:0005768: endosome	2.67E-02
12	GO:0009505: plant-type cell wall	3.39E-02