Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019303: D-ribose catabolic process0.00E+00
2GO:0006376: mRNA splice site selection4.26E-06
3GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic4.26E-06
4GO:0061014: positive regulation of mRNA catabolic process4.26E-06
5GO:0034243: regulation of transcription elongation from RNA polymerase II promoter1.18E-05
6GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.19E-05
7GO:0032786: positive regulation of DNA-templated transcription, elongation2.19E-05
8GO:0035066: positive regulation of histone acetylation2.19E-05
9GO:0032940: secretion by cell2.19E-05
10GO:0010587: miRNA catabolic process3.41E-05
11GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA4.83E-05
12GO:0046835: carbohydrate phosphorylation9.94E-05
13GO:0000398: mRNA splicing, via spliceosome1.00E-04
14GO:0070370: cellular heat acclimation1.19E-04
15GO:0006402: mRNA catabolic process1.39E-04
16GO:0040029: regulation of gene expression, epigenetic1.39E-04
17GO:0006367: transcription initiation from RNA polymerase II promoter1.60E-04
18GO:0010417: glucuronoxylan biosynthetic process1.60E-04
19GO:0006325: chromatin organization2.29E-04
20GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.77E-04
21GO:0006406: mRNA export from nucleus4.07E-04
22GO:0009116: nucleoside metabolic process4.07E-04
23GO:0006338: chromatin remodeling4.07E-04
24GO:0006397: mRNA processing4.67E-04
25GO:0001944: vasculature development5.20E-04
26GO:0042127: regulation of cell proliferation5.49E-04
27GO:0045492: xylan biosynthetic process5.49E-04
28GO:0042147: retrograde transport, endosome to Golgi5.78E-04
29GO:0006891: intra-Golgi vesicle-mediated transport7.30E-04
30GO:0009630: gravitropism7.62E-04
31GO:0009567: double fertilization forming a zygote and endosperm8.27E-04
32GO:0010286: heat acclimation8.59E-04
33GO:0009834: plant-type secondary cell wall biogenesis1.17E-03
34GO:0009631: cold acclimation1.20E-03
35GO:0006897: endocytosis1.43E-03
36GO:0042546: cell wall biogenesis1.55E-03
37GO:0010228: vegetative to reproductive phase transition of meristem3.46E-03
38GO:0008380: RNA splicing3.79E-03
39GO:0009826: unidimensional cell growth4.40E-03
40GO:0009723: response to ethylene4.99E-03
41GO:0009408: response to heat6.85E-03
42GO:0009873: ethylene-activated signaling pathway8.19E-03
43GO:0006357: regulation of transcription from RNA polymerase II promoter8.33E-03
44GO:0009735: response to cytokinin9.61E-03
45GO:0051301: cell division1.09E-02
46GO:0006414: translational elongation1.36E-02
47GO:0071555: cell wall organization1.69E-02
48GO:0009733: response to auxin1.83E-02
49GO:0015031: protein transport2.00E-02
50GO:0050832: defense response to fungus3.67E-02
RankGO TermAdjusted P value
1GO:0000384: first spliceosomal transesterification activity0.00E+00
2GO:0047517: 1,4-beta-D-xylan synthase activity1.18E-05
3GO:0004534: 5'-3' exoribonuclease activity1.18E-05
4GO:0080116: glucuronoxylan glucuronosyltransferase activity2.19E-05
5GO:0008409: 5'-3' exonuclease activity4.83E-05
6GO:0000993: RNA polymerase II core binding4.83E-05
7GO:0004747: ribokinase activity9.94E-05
8GO:0003723: RNA binding2.11E-04
9GO:0003727: single-stranded RNA binding5.49E-04
10GO:0004402: histone acetyltransferase activity6.08E-04
11GO:0005515: protein binding6.14E-04
12GO:0003713: transcription coactivator activity6.38E-04
13GO:0003676: nucleic acid binding7.52E-04
14GO:0003746: translation elongation factor activity1.28E-03
15GO:0003729: mRNA binding2.24E-03
16GO:0042802: identical protein binding3.95E-03
17GO:0003682: chromatin binding4.69E-03
18GO:0003924: GTPase activity6.85E-03
19GO:0008270: zinc ion binding7.34E-03
20GO:0005525: GTP binding1.45E-02
21GO:0003824: catalytic activity1.80E-02
22GO:0003700: transcription factor activity, sequence-specific DNA binding1.96E-02
23GO:0003677: DNA binding2.38E-02
RankGO TermAdjusted P value
1GO:0070274: RES complex0.00E+00
2GO:0032044: DSIF complex4.26E-06
3GO:0035061: interchromatin granule1.18E-05
4GO:0005672: transcription factor TFIIA complex2.19E-05
5GO:0042646: plastid nucleoid3.41E-05
6GO:0005844: polysome4.83E-05
7GO:0016607: nuclear speck7.18E-05
8GO:0071004: U2-type prespliceosome1.39E-04
9GO:0010494: cytoplasmic stress granule1.83E-04
10GO:0005685: U1 snRNP1.83E-04
11GO:0071011: precatalytic spliceosome2.05E-04
12GO:0005686: U2 snRNP2.29E-04
13GO:0071013: catalytic step 2 spliceosome2.53E-04
14GO:0000932: P-body9.24E-04
15GO:0005802: trans-Golgi network1.21E-03
16GO:0005768: endosome1.37E-03
17GO:0005634: nucleus1.71E-03
18GO:0000139: Golgi membrane2.04E-03
19GO:0005681: spliceosomal complex2.05E-03
20GO:0016020: membrane1.90E-02
21GO:0005829: cytosol2.15E-02
22GO:0005730: nucleolus2.45E-02
23GO:0005794: Golgi apparatus2.68E-02
24GO:0005774: vacuolar membrane4.09E-02
Gene type



Gene DE type