Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G02270

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070070: proton-transporting V-type ATPase complex assembly0.00E+00
2GO:0042906: xanthine transport0.00E+00
3GO:0000390: spliceosomal complex disassembly0.00E+00
4GO:0043171: peptide catabolic process0.00E+00
5GO:0010219: regulation of vernalization response0.00E+00
6GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening0.00E+00
7GO:0010378: temperature compensation of the circadian clock0.00E+00
8GO:0010730: negative regulation of hydrogen peroxide biosynthetic process0.00E+00
9GO:0005997: xylulose metabolic process0.00E+00
10GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
11GO:0009409: response to cold5.37E-08
12GO:0009768: photosynthesis, light harvesting in photosystem I2.81E-07
13GO:0007623: circadian rhythm7.96E-07
14GO:0009645: response to low light intensity stimulus9.55E-06
15GO:0018298: protein-chromophore linkage1.39E-05
16GO:0009415: response to water1.43E-05
17GO:0009737: response to abscisic acid2.44E-05
18GO:0042542: response to hydrogen peroxide4.11E-05
19GO:0000380: alternative mRNA splicing, via spliceosome1.37E-04
20GO:0010218: response to far red light2.10E-04
21GO:0009269: response to desiccation2.39E-04
22GO:0098869: cellular oxidant detoxification3.44E-04
23GO:0009769: photosynthesis, light harvesting in photosystem II3.44E-04
24GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic3.81E-04
25GO:1990641: response to iron ion starvation3.81E-04
26GO:0009609: response to symbiotic bacterium3.81E-04
27GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.81E-04
28GO:1902265: abscisic acid homeostasis3.81E-04
29GO:0015812: gamma-aminobutyric acid transport3.81E-04
30GO:0032958: inositol phosphate biosynthetic process3.81E-04
31GO:0006369: termination of RNA polymerase II transcription3.81E-04
32GO:0009819: drought recovery4.31E-04
33GO:0009644: response to high light intensity4.53E-04
34GO:0009416: response to light stimulus7.48E-04
35GO:0015914: phospholipid transport8.27E-04
36GO:0015720: allantoin transport8.27E-04
37GO:0048833: specification of floral organ number8.27E-04
38GO:0015857: uracil transport8.27E-04
39GO:0006101: citrate metabolic process8.27E-04
40GO:0051170: nuclear import8.27E-04
41GO:0030003: cellular cation homeostasis8.27E-04
42GO:0045948: positive regulation of translational initiation8.27E-04
43GO:0009970: cellular response to sulfate starvation8.68E-04
44GO:0006995: cellular response to nitrogen starvation8.68E-04
45GO:0009414: response to water deprivation1.07E-03
46GO:0006970: response to osmotic stress1.27E-03
47GO:0009651: response to salt stress1.29E-03
48GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.29E-03
49GO:0030029: actin filament-based process1.34E-03
50GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.34E-03
51GO:0042256: mature ribosome assembly1.34E-03
52GO:0042344: indole glucosinolate catabolic process1.34E-03
53GO:0006954: inflammatory response1.34E-03
54GO:0006598: polyamine catabolic process1.34E-03
55GO:0042780: tRNA 3'-end processing1.34E-03
56GO:0071705: nitrogen compound transport1.34E-03
57GO:0009817: defense response to fungus, incompatible interaction1.35E-03
58GO:0006811: ion transport1.53E-03
59GO:0080167: response to karrikin1.63E-03
60GO:0009631: cold acclimation1.63E-03
61GO:0009637: response to blue light1.83E-03
62GO:0006020: inositol metabolic process1.93E-03
63GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly1.93E-03
64GO:0010601: positive regulation of auxin biosynthetic process1.93E-03
65GO:0015749: monosaccharide transport1.93E-03
66GO:1901332: negative regulation of lateral root development1.93E-03
67GO:0006882: cellular zinc ion homeostasis1.93E-03
68GO:0015979: photosynthesis2.07E-03
69GO:0007165: signal transduction2.43E-03
70GO:0048511: rhythmic process2.44E-03
71GO:0010114: response to red light2.53E-03
72GO:0006646: phosphatidylethanolamine biosynthetic process2.60E-03
73GO:0009687: abscisic acid metabolic process2.60E-03
74GO:0015743: malate transport2.60E-03
75GO:0048442: sepal development2.60E-03
76GO:0009765: photosynthesis, light harvesting2.60E-03
77GO:0030104: water homeostasis2.60E-03
78GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain2.60E-03
79GO:0006878: cellular copper ion homeostasis2.60E-03
80GO:0008643: carbohydrate transport2.80E-03
81GO:0035556: intracellular signal transduction2.91E-03
82GO:0071215: cellular response to abscisic acid stimulus2.92E-03
83GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.23E-03
84GO:0010468: regulation of gene expression3.28E-03
85GO:0048578: positive regulation of long-day photoperiodism, flowering3.32E-03
86GO:0006656: phosphatidylcholine biosynthetic process3.32E-03
87GO:0097428: protein maturation by iron-sulfur cluster transfer3.32E-03
88GO:0043097: pyrimidine nucleoside salvage3.32E-03
89GO:0042732: D-xylose metabolic process4.11E-03
90GO:0045040: protein import into mitochondrial outer membrane4.11E-03
91GO:0006206: pyrimidine nucleobase metabolic process4.11E-03
92GO:0007035: vacuolar acidification4.11E-03
93GO:0000741: karyogamy4.11E-03
94GO:0006814: sodium ion transport4.31E-03
95GO:0042752: regulation of circadian rhythm4.31E-03
96GO:0010555: response to mannitol4.95E-03
97GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.95E-03
98GO:0045926: negative regulation of growth4.95E-03
99GO:0000302: response to reactive oxygen species4.95E-03
100GO:0031930: mitochondria-nucleus signaling pathway4.95E-03
101GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.95E-03
102GO:0010044: response to aluminum ion5.85E-03
103GO:0048437: floral organ development5.85E-03
104GO:1902074: response to salt5.85E-03
105GO:0010038: response to metal ion5.85E-03
106GO:0010286: heat acclimation6.37E-03
107GO:0006102: isocitrate metabolic process6.80E-03
108GO:0009061: anaerobic respiration6.80E-03
109GO:0032508: DNA duplex unwinding6.80E-03
110GO:0006491: N-glycan processing6.80E-03
111GO:0010099: regulation of photomorphogenesis7.80E-03
112GO:0009827: plant-type cell wall modification7.80E-03
113GO:0006367: transcription initiation from RNA polymerase II promoter7.80E-03
114GO:0001510: RNA methylation7.80E-03
115GO:0048573: photoperiodism, flowering8.44E-03
116GO:0006950: response to stress8.44E-03
117GO:0006098: pentose-phosphate shunt8.86E-03
118GO:0090333: regulation of stomatal closure8.86E-03
119GO:0046916: cellular transition metal ion homeostasis8.86E-03
120GO:0000160: phosphorelay signal transduction system9.84E-03
121GO:0005982: starch metabolic process9.96E-03
122GO:2000280: regulation of root development9.96E-03
123GO:0048354: mucilage biosynthetic process involved in seed coat development9.96E-03
124GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.96E-03
125GO:0008202: steroid metabolic process9.96E-03
126GO:0010043: response to zinc ion1.08E-02
127GO:0010119: regulation of stomatal movement1.08E-02
128GO:0009641: shade avoidance1.11E-02
129GO:0055062: phosphate ion homeostasis1.11E-02
130GO:0010162: seed dormancy process1.11E-02
131GO:0048441: petal development1.11E-02
132GO:0045087: innate immune response1.19E-02
133GO:0016051: carbohydrate biosynthetic process1.19E-02
134GO:0006816: calcium ion transport1.23E-02
135GO:0009682: induced systemic resistance1.23E-02
136GO:0052544: defense response by callose deposition in cell wall1.23E-02
137GO:0016925: protein sumoylation1.36E-02
138GO:0009718: anthocyanin-containing compound biosynthetic process1.48E-02
139GO:2000012: regulation of auxin polar transport1.48E-02
140GO:0006626: protein targeting to mitochondrion1.48E-02
141GO:0010102: lateral root morphogenesis1.48E-02
142GO:0000209: protein polyubiquitination1.60E-02
143GO:0009266: response to temperature stimulus1.62E-02
144GO:0048440: carpel development1.62E-02
145GO:0007034: vacuolar transport1.62E-02
146GO:0019853: L-ascorbic acid biosynthetic process1.75E-02
147GO:0010030: positive regulation of seed germination1.75E-02
148GO:0000165: MAPK cascade1.86E-02
149GO:0006406: mRNA export from nucleus2.04E-02
150GO:0045333: cellular respiration2.04E-02
151GO:0006825: copper ion transport2.19E-02
152GO:0016575: histone deacetylation2.19E-02
153GO:0006874: cellular calcium ion homeostasis2.19E-02
154GO:0009695: jasmonic acid biosynthetic process2.19E-02
155GO:0003333: amino acid transmembrane transport2.34E-02
156GO:0019748: secondary metabolic process2.50E-02
157GO:0010017: red or far-red light signaling pathway2.50E-02
158GO:0006012: galactose metabolic process2.65E-02
159GO:0009738: abscisic acid-activated signaling pathway2.74E-02
160GO:0048443: stamen development2.82E-02
161GO:0009561: megagametogenesis2.82E-02
162GO:0009306: protein secretion2.82E-02
163GO:0016192: vesicle-mediated transport2.84E-02
164GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.98E-02
165GO:0006396: RNA processing3.05E-02
166GO:0015991: ATP hydrolysis coupled proton transport3.15E-02
167GO:0042631: cellular response to water deprivation3.15E-02
168GO:0000226: microtubule cytoskeleton organization3.15E-02
169GO:0080022: primary root development3.15E-02
170GO:0042391: regulation of membrane potential3.15E-02
171GO:0010501: RNA secondary structure unwinding3.15E-02
172GO:0000413: protein peptidyl-prolyl isomerization3.15E-02
173GO:0010051: xylem and phloem pattern formation3.15E-02
174GO:0046323: glucose import3.33E-02
175GO:0010197: polar nucleus fusion3.33E-02
176GO:0045892: negative regulation of transcription, DNA-templated3.40E-02
177GO:0048544: recognition of pollen3.50E-02
178GO:0015986: ATP synthesis coupled proton transport3.50E-02
179GO:0009556: microsporogenesis3.68E-02
180GO:0008654: phospholipid biosynthetic process3.68E-02
181GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.86E-02
182GO:0006635: fatty acid beta-oxidation3.86E-02
183GO:0055085: transmembrane transport4.07E-02
184GO:0042744: hydrogen peroxide catabolic process4.21E-02
185GO:1901657: glycosyl compound metabolic process4.24E-02
186GO:0019760: glucosinolate metabolic process4.43E-02
187GO:0006914: autophagy4.43E-02
188GO:0006511: ubiquitin-dependent protein catabolic process4.48E-02
189GO:0006904: vesicle docking involved in exocytosis4.62E-02
190GO:0016036: cellular response to phosphate starvation4.74E-02
RankGO TermAdjusted P value
1GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
2GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
3GO:0047668: amygdalin beta-glucosidase activity0.00E+00
4GO:1990446: U1 snRNP binding0.00E+00
5GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
6GO:0005272: sodium channel activity0.00E+00
7GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
8GO:0042907: xanthine transmembrane transporter activity0.00E+00
9GO:0010349: L-galactose dehydrogenase activity0.00E+00
10GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
11GO:0009045: xylose isomerase activity0.00E+00
12GO:0080082: esculin beta-glucosidase activity0.00E+00
13GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
14GO:0004567: beta-mannosidase activity0.00E+00
15GO:0031409: pigment binding1.55E-07
16GO:0016168: chlorophyll binding8.17E-06
17GO:0004096: catalase activity2.27E-05
18GO:0005253: anion channel activity8.79E-05
19GO:0004707: MAP kinase activity2.39E-04
20GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.81E-04
21GO:0009679: hexose:proton symporter activity3.81E-04
22GO:0035671: enone reductase activity3.81E-04
23GO:0000829: inositol heptakisphosphate kinase activity3.81E-04
24GO:0010013: N-1-naphthylphthalamic acid binding3.81E-04
25GO:0080079: cellobiose glucosidase activity3.81E-04
26GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.81E-04
27GO:0046870: cadmium ion binding3.81E-04
28GO:0004856: xylulokinase activity3.81E-04
29GO:0016274: protein-arginine N-methyltransferase activity3.81E-04
30GO:0070006: metalloaminopeptidase activity3.81E-04
31GO:0000828: inositol hexakisphosphate kinase activity3.81E-04
32GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.81E-04
33GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.81E-04
34GO:0004525: ribonuclease III activity4.31E-04
35GO:0001047: core promoter binding8.27E-04
36GO:0032791: lead ion binding8.27E-04
37GO:0005274: allantoin uptake transmembrane transporter activity8.27E-04
38GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters8.27E-04
39GO:0004609: phosphatidylserine decarboxylase activity8.27E-04
40GO:0047216: inositol 3-alpha-galactosyltransferase activity8.27E-04
41GO:0003994: aconitate hydratase activity8.27E-04
42GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity8.27E-04
43GO:0004839: ubiquitin activating enzyme activity8.27E-04
44GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.27E-04
45GO:0015180: L-alanine transmembrane transporter activity8.27E-04
46GO:0046592: polyamine oxidase activity1.34E-03
47GO:0019948: SUMO activating enzyme activity1.34E-03
48GO:0019829: cation-transporting ATPase activity1.34E-03
49GO:0017150: tRNA dihydrouridine synthase activity1.34E-03
50GO:0042781: 3'-tRNA processing endoribonuclease activity1.34E-03
51GO:0031624: ubiquitin conjugating enzyme binding1.46E-03
52GO:0004300: enoyl-CoA hydratase activity1.93E-03
53GO:0015189: L-lysine transmembrane transporter activity1.93E-03
54GO:0048027: mRNA 5'-UTR binding1.93E-03
55GO:0015181: arginine transmembrane transporter activity1.93E-03
56GO:0004165: dodecenoyl-CoA delta-isomerase activity1.93E-03
57GO:0005351: sugar:proton symporter activity2.41E-03
58GO:0015210: uracil transmembrane transporter activity2.60E-03
59GO:0005313: L-glutamate transmembrane transporter activity2.60E-03
60GO:0008526: phosphatidylinositol transporter activity2.60E-03
61GO:0042277: peptide binding2.60E-03
62GO:0009916: alternative oxidase activity2.60E-03
63GO:0010294: abscisic acid glucosyltransferase activity3.32E-03
64GO:0015145: monosaccharide transmembrane transporter activity3.32E-03
65GO:0008641: small protein activating enzyme activity3.32E-03
66GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.32E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor3.32E-03
68GO:0005247: voltage-gated chloride channel activity4.11E-03
69GO:2001070: starch binding4.11E-03
70GO:0004629: phospholipase C activity4.11E-03
71GO:0019137: thioglucosidase activity4.11E-03
72GO:0051117: ATPase binding4.11E-03
73GO:0015562: efflux transmembrane transporter activity4.11E-03
74GO:0000293: ferric-chelate reductase activity4.11E-03
75GO:0031369: translation initiation factor binding4.11E-03
76GO:0004849: uridine kinase activity4.95E-03
77GO:0070300: phosphatidic acid binding4.95E-03
78GO:0004602: glutathione peroxidase activity4.95E-03
79GO:0003950: NAD+ ADP-ribosyltransferase activity4.95E-03
80GO:0004435: phosphatidylinositol phospholipase C activity4.95E-03
81GO:0005261: cation channel activity4.95E-03
82GO:0000156: phosphorelay response regulator activity5.64E-03
83GO:0009881: photoreceptor activity5.85E-03
84GO:0015140: malate transmembrane transporter activity5.85E-03
85GO:0004033: aldo-keto reductase (NADP) activity6.80E-03
86GO:0061630: ubiquitin protein ligase activity7.30E-03
87GO:0005515: protein binding7.74E-03
88GO:0005267: potassium channel activity7.80E-03
89GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.80E-03
90GO:0005375: copper ion transmembrane transporter activity7.80E-03
91GO:0001104: RNA polymerase II transcription cofactor activity7.80E-03
92GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.00E-03
93GO:0102483: scopolin beta-glucosidase activity8.44E-03
94GO:0016301: kinase activity8.82E-03
95GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity8.86E-03
96GO:0000989: transcription factor activity, transcription factor binding8.86E-03
97GO:0015144: carbohydrate transmembrane transporter activity9.73E-03
98GO:0050897: cobalt ion binding1.08E-02
99GO:0015020: glucuronosyltransferase activity1.11E-02
100GO:0003697: single-stranded DNA binding1.19E-02
101GO:0004177: aminopeptidase activity1.23E-02
102GO:0046961: proton-transporting ATPase activity, rotational mechanism1.23E-02
103GO:0008422: beta-glucosidase activity1.30E-02
104GO:0005262: calcium channel activity1.48E-02
105GO:0004565: beta-galactosidase activity1.48E-02
106GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.48E-02
107GO:0005315: inorganic phosphate transmembrane transporter activity1.48E-02
108GO:0008131: primary amine oxidase activity1.62E-02
109GO:0030552: cAMP binding1.75E-02
110GO:0030553: cGMP binding1.75E-02
111GO:0004970: ionotropic glutamate receptor activity1.75E-02
112GO:0005217: intracellular ligand-gated ion channel activity1.75E-02
113GO:0051536: iron-sulfur cluster binding2.04E-02
114GO:0004407: histone deacetylase activity2.04E-02
115GO:0005216: ion channel activity2.19E-02
116GO:0008324: cation transmembrane transporter activity2.19E-02
117GO:0019706: protein-cysteine S-palmitoyltransferase activity2.34E-02
118GO:0004497: monooxygenase activity2.66E-02
119GO:0003727: single-stranded RNA binding2.82E-02
120GO:0008514: organic anion transmembrane transporter activity2.82E-02
121GO:0005249: voltage-gated potassium channel activity3.15E-02
122GO:0030551: cyclic nucleotide binding3.15E-02
123GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity3.33E-02
124GO:0004722: protein serine/threonine phosphatase activity3.73E-02
125GO:0005200: structural constituent of cytoskeleton4.62E-02
126GO:0015297: antiporter activity4.85E-02
RankGO TermAdjusted P value
1GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
2GO:0031981: nuclear lumen0.00E+00
3GO:0030076: light-harvesting complex1.12E-07
4GO:0005777: peroxisome1.06E-05
5GO:0009522: photosystem I4.19E-05
6GO:0016021: integral component of membrane1.23E-04
7GO:0010287: plastoglobule2.57E-04
8GO:0012510: trans-Golgi network transport vesicle membrane3.81E-04
9GO:0009523: photosystem II5.60E-04
10GO:0032777: Piccolo NuA4 histone acetyltransferase complex8.27E-04
11GO:0043036: starch grain8.27E-04
12GO:0000151: ubiquitin ligase complex1.35E-03
13GO:0016471: vacuolar proton-transporting V-type ATPase complex2.60E-03
14GO:0032586: protein storage vacuole membrane2.60E-03
15GO:0009517: PSII associated light-harvesting complex II2.60E-03
16GO:0005776: autophagosome2.60E-03
17GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain3.32E-03
18GO:0005886: plasma membrane3.42E-03
19GO:0009579: thylakoid3.72E-03
20GO:0005851: eukaryotic translation initiation factor 2B complex4.11E-03
21GO:0034707: chloride channel complex4.11E-03
22GO:0070847: core mediator complex4.11E-03
23GO:0000815: ESCRT III complex4.95E-03
24GO:0016363: nuclear matrix4.95E-03
25GO:0005802: trans-Golgi network6.61E-03
26GO:0000932: P-body7.16E-03
27GO:0000326: protein storage vacuole7.80E-03
28GO:0000307: cyclin-dependent protein kinase holoenzyme complex7.80E-03
29GO:0005742: mitochondrial outer membrane translocase complex7.80E-03
30GO:0005680: anaphase-promoting complex8.86E-03
31GO:0010494: cytoplasmic stress granule8.86E-03
32GO:0031090: organelle membrane8.86E-03
33GO:0005783: endoplasmic reticulum1.07E-02
34GO:0009705: plant-type vacuole membrane1.17E-02
35GO:0009534: chloroplast thylakoid1.23E-02
36GO:0005618: cell wall1.23E-02
37GO:0005665: DNA-directed RNA polymerase II, core complex1.36E-02
38GO:0016020: membrane1.71E-02
39GO:0009941: chloroplast envelope1.87E-02
40GO:0031966: mitochondrial membrane1.93E-02
41GO:0070469: respiratory chain2.19E-02
42GO:0042651: thylakoid membrane2.19E-02
43GO:0005741: mitochondrial outer membrane2.34E-02
44GO:0031410: cytoplasmic vesicle2.50E-02
45GO:0010008: endosome membrane2.54E-02
46GO:0005744: mitochondrial inner membrane presequence translocase complex2.82E-02
47GO:0031965: nuclear membrane3.68E-02
48GO:0016592: mediator complex4.05E-02
49GO:0009535: chloroplast thylakoid membrane4.73E-02
Gene type



Gene DE type