Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G01960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035278: miRNA mediated inhibition of translation0.00E+00
2GO:2000636: positive regulation of primary miRNA processing0.00E+00
3GO:2000630: positive regulation of miRNA metabolic process0.00E+00
4GO:1903288: positive regulation of potassium ion import0.00E+00
5GO:0006888: ER to Golgi vesicle-mediated transport3.26E-06
6GO:0046488: phosphatidylinositol metabolic process5.10E-05
7GO:0006521: regulation of cellular amino acid metabolic process5.10E-05
8GO:0006610: ribosomal protein import into nucleus5.10E-05
9GO:0006517: protein deglycosylation9.05E-05
10GO:0006473: protein acetylation9.05E-05
11GO:0006013: mannose metabolic process9.05E-05
12GO:0080119: ER body organization1.36E-04
13GO:1901000: regulation of response to salt stress1.36E-04
14GO:0045723: positive regulation of fatty acid biosynthetic process1.86E-04
15GO:1990937: xylan acetylation1.86E-04
16GO:0006886: intracellular protein transport2.16E-04
17GO:0048015: phosphatidylinositol-mediated signaling2.40E-04
18GO:0007029: endoplasmic reticulum organization2.40E-04
19GO:0032876: negative regulation of DNA endoreduplication2.40E-04
20GO:0045491: xylan metabolic process2.97E-04
21GO:0009635: response to herbicide2.97E-04
22GO:0048232: male gamete generation2.97E-04
23GO:0000060: protein import into nucleus, translocation2.97E-04
24GO:0000122: negative regulation of transcription from RNA polymerase II promoter4.19E-04
25GO:0006368: transcription elongation from RNA polymerase II promoter4.19E-04
26GO:0010047: fruit dehiscence4.19E-04
27GO:0006491: N-glycan processing4.84E-04
28GO:0006607: NLS-bearing protein import into nucleus6.19E-04
29GO:0000398: mRNA splicing, via spliceosome6.66E-04
30GO:0016573: histone acetylation6.90E-04
31GO:0008285: negative regulation of cell proliferation8.37E-04
32GO:0008361: regulation of cell size9.12E-04
33GO:0007030: Golgi organization1.15E-03
34GO:0080188: RNA-directed DNA methylation1.15E-03
35GO:0009901: anther dehiscence1.15E-03
36GO:0042023: DNA endoreduplication1.23E-03
37GO:0006487: protein N-linked glycosylation1.32E-03
38GO:0016575: histone deacetylation1.41E-03
39GO:0006366: transcription from RNA polymerase II promoter1.50E-03
40GO:0010227: floral organ abscission1.68E-03
41GO:0010091: trichome branching1.78E-03
42GO:0010584: pollen exine formation1.78E-03
43GO:0045492: xylan biosynthetic process1.78E-03
44GO:0006606: protein import into nucleus1.98E-03
45GO:0045892: negative regulation of transcription, DNA-templated2.21E-03
46GO:0006810: transport2.22E-03
47GO:0006397: mRNA processing2.78E-03
48GO:0016579: protein deubiquitination2.95E-03
49GO:0009911: positive regulation of flower development3.07E-03
50GO:0016049: cell growth3.55E-03
51GO:0048481: plant ovule development3.68E-03
52GO:0009834: plant-type secondary cell wall biogenesis3.93E-03
53GO:0009908: flower development4.26E-03
54GO:0008283: cell proliferation5.13E-03
55GO:0009644: response to high light intensity5.42E-03
56GO:0042538: hyperosmotic salinity response6.00E-03
57GO:0006417: regulation of translation6.76E-03
58GO:0048367: shoot system development7.24E-03
59GO:0018105: peptidyl-serine phosphorylation8.22E-03
60GO:0009845: seed germination9.96E-03
61GO:0010150: leaf senescence1.18E-02
62GO:0009409: response to cold1.29E-02
63GO:0008380: RNA splicing1.34E-02
64GO:0006970: response to osmotic stress1.70E-02
65GO:0048366: leaf development1.81E-02
66GO:0006468: protein phosphorylation1.82E-02
67GO:0016192: vesicle-mediated transport1.94E-02
68GO:0046777: protein autophosphorylation1.97E-02
69GO:0009737: response to abscisic acid2.03E-02
70GO:0009751: response to salicylic acid2.45E-02
71GO:0048364: root development2.55E-02
72GO:0009734: auxin-activated signaling pathway3.16E-02
73GO:0006511: ubiquitin-dependent protein catabolic process4.63E-02
RankGO TermAdjusted P value
1GO:0004694: eukaryotic translation initiation factor 2alpha kinase activity0.00E+00
2GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity0.00E+00
3GO:0102490: 8-oxo-dGTP phosphohydrolase activity1.86E-04
4GO:0001106: RNA polymerase II transcription corepressor activity1.86E-04
5GO:0042578: phosphoric ester hydrolase activity2.97E-04
6GO:0004559: alpha-mannosidase activity3.57E-04
7GO:0005085: guanyl-nucleotide exchange factor activity4.19E-04
8GO:0031490: chromatin DNA binding6.90E-04
9GO:0001055: RNA polymerase II activity6.90E-04
10GO:0000049: tRNA binding9.12E-04
11GO:0008139: nuclear localization sequence binding9.90E-04
12GO:0003712: transcription cofactor activity1.15E-03
13GO:0004407: histone deacetylase activity1.32E-03
14GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.50E-03
15GO:0005215: transporter activity1.55E-03
16GO:0008270: zinc ion binding1.92E-03
17GO:0004402: histone acetyltransferase activity1.98E-03
18GO:0003713: transcription coactivator activity2.08E-03
19GO:0008536: Ran GTPase binding2.08E-03
20GO:0003729: mRNA binding2.25E-03
21GO:0004843: thiol-dependent ubiquitin-specific protease activity2.40E-03
22GO:0005515: protein binding4.41E-03
23GO:0004712: protein serine/threonine/tyrosine kinase activity4.58E-03
24GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.31E-03
25GO:0016874: ligase activity7.72E-03
26GO:0008026: ATP-dependent helicase activity8.39E-03
27GO:0004386: helicase activity8.56E-03
28GO:0008565: protein transporter activity1.07E-02
29GO:0004672: protein kinase activity1.40E-02
30GO:0016740: transferase activity4.29E-02
31GO:0030246: carbohydrate binding4.60E-02
32GO:0004674: protein serine/threonine kinase activity4.69E-02
RankGO TermAdjusted P value
1GO:0070449: elongin complex0.00E+00
2GO:0030127: COPII vesicle coat2.48E-09
3GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.21E-06
4GO:0005681: spliceosomal complex1.97E-05
5GO:0000139: Golgi membrane2.80E-05
6GO:0000118: histone deacetylase complex3.57E-04
7GO:0034399: nuclear periphery4.84E-04
8GO:0015030: Cajal body6.90E-04
9GO:0005665: DNA-directed RNA polymerase II, core complex9.12E-04
10GO:0019013: viral nucleocapsid9.90E-04
11GO:0030659: cytoplasmic vesicle membrane1.07E-03
12GO:0005634: nucleus1.49E-03
13GO:0031965: nuclear membrane2.29E-03
14GO:0000785: chromatin2.50E-03
15GO:0030529: intracellular ribonucleoprotein complex3.07E-03
16GO:0000932: P-body3.07E-03
17GO:0005643: nuclear pore3.68E-03
18GO:0010008: endosome membrane7.24E-03
19GO:0005802: trans-Golgi network7.52E-03
20GO:0005768: endosome8.55E-03
21GO:0005789: endoplasmic reticulum membrane1.46E-02
22GO:0005829: cytosol3.02E-02
23GO:0009506: plasmodesma3.56E-02
Gene type



Gene DE type