GO Enrichment Analysis of Co-expressed Genes with
AT1G01790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0045176: apical protein localization | 0.00E+00 |
| 7 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 8 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 9 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 10 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 11 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 7.85E-12 |
| 13 | GO:0015979: photosynthesis | 2.43E-07 |
| 14 | GO:2000122: negative regulation of stomatal complex development | 2.45E-05 |
| 15 | GO:0010037: response to carbon dioxide | 2.45E-05 |
| 16 | GO:0015976: carbon utilization | 2.45E-05 |
| 17 | GO:0071482: cellular response to light stimulus | 1.75E-04 |
| 18 | GO:0009657: plastid organization | 1.75E-04 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.80E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.80E-04 |
| 21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.80E-04 |
| 22 | GO:0000481: maturation of 5S rRNA | 1.80E-04 |
| 23 | GO:1904964: positive regulation of phytol biosynthetic process | 1.80E-04 |
| 24 | GO:0033481: galacturonate biosynthetic process | 1.80E-04 |
| 25 | GO:0043609: regulation of carbon utilization | 1.80E-04 |
| 26 | GO:0034337: RNA folding | 1.80E-04 |
| 27 | GO:0006810: transport | 1.85E-04 |
| 28 | GO:0009098: leucine biosynthetic process | 2.55E-04 |
| 29 | GO:0018298: protein-chromophore linkage | 3.44E-04 |
| 30 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.05E-04 |
| 31 | GO:0034755: iron ion transmembrane transport | 4.05E-04 |
| 32 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.05E-04 |
| 33 | GO:0097054: L-glutamate biosynthetic process | 4.05E-04 |
| 34 | GO:0006000: fructose metabolic process | 6.61E-04 |
| 35 | GO:0006518: peptide metabolic process | 6.61E-04 |
| 36 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.77E-04 |
| 37 | GO:0009658: chloroplast organization | 9.25E-04 |
| 38 | GO:0009152: purine ribonucleotide biosynthetic process | 9.45E-04 |
| 39 | GO:0046653: tetrahydrofolate metabolic process | 9.45E-04 |
| 40 | GO:0006537: glutamate biosynthetic process | 9.45E-04 |
| 41 | GO:0009800: cinnamic acid biosynthetic process | 9.45E-04 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 9.45E-04 |
| 43 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.45E-04 |
| 44 | GO:0010371: regulation of gibberellin biosynthetic process | 9.45E-04 |
| 45 | GO:0045727: positive regulation of translation | 1.25E-03 |
| 46 | GO:0015994: chlorophyll metabolic process | 1.25E-03 |
| 47 | GO:0019676: ammonia assimilation cycle | 1.25E-03 |
| 48 | GO:0009416: response to light stimulus | 1.29E-03 |
| 49 | GO:0080110: sporopollenin biosynthetic process | 1.59E-03 |
| 50 | GO:0006564: L-serine biosynthetic process | 1.59E-03 |
| 51 | GO:0031365: N-terminal protein amino acid modification | 1.59E-03 |
| 52 | GO:0006461: protein complex assembly | 1.59E-03 |
| 53 | GO:0000470: maturation of LSU-rRNA | 1.96E-03 |
| 54 | GO:0016554: cytidine to uridine editing | 1.96E-03 |
| 55 | GO:0009913: epidermal cell differentiation | 1.96E-03 |
| 56 | GO:0006559: L-phenylalanine catabolic process | 1.96E-03 |
| 57 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.96E-03 |
| 58 | GO:0010190: cytochrome b6f complex assembly | 1.96E-03 |
| 59 | GO:0006596: polyamine biosynthetic process | 1.96E-03 |
| 60 | GO:0006561: proline biosynthetic process | 1.96E-03 |
| 61 | GO:0048759: xylem vessel member cell differentiation | 1.96E-03 |
| 62 | GO:0010405: arabinogalactan protein metabolic process | 1.96E-03 |
| 63 | GO:0048827: phyllome development | 1.96E-03 |
| 64 | GO:0042549: photosystem II stabilization | 1.96E-03 |
| 65 | GO:0042372: phylloquinone biosynthetic process | 2.35E-03 |
| 66 | GO:0009082: branched-chain amino acid biosynthetic process | 2.35E-03 |
| 67 | GO:0009099: valine biosynthetic process | 2.35E-03 |
| 68 | GO:0010019: chloroplast-nucleus signaling pathway | 2.35E-03 |
| 69 | GO:0010027: thylakoid membrane organization | 2.42E-03 |
| 70 | GO:0010196: nonphotochemical quenching | 2.77E-03 |
| 71 | GO:0050829: defense response to Gram-negative bacterium | 2.77E-03 |
| 72 | GO:0009645: response to low light intensity stimulus | 2.77E-03 |
| 73 | GO:0006400: tRNA modification | 2.77E-03 |
| 74 | GO:0048564: photosystem I assembly | 3.21E-03 |
| 75 | GO:0008610: lipid biosynthetic process | 3.21E-03 |
| 76 | GO:0009704: de-etiolation | 3.21E-03 |
| 77 | GO:0032508: DNA duplex unwinding | 3.21E-03 |
| 78 | GO:0010119: regulation of stomatal movement | 3.63E-03 |
| 79 | GO:0006002: fructose 6-phosphate metabolic process | 3.67E-03 |
| 80 | GO:0009097: isoleucine biosynthetic process | 3.67E-03 |
| 81 | GO:0032544: plastid translation | 3.67E-03 |
| 82 | GO:0017004: cytochrome complex assembly | 3.67E-03 |
| 83 | GO:0009853: photorespiration | 3.98E-03 |
| 84 | GO:0009637: response to blue light | 3.98E-03 |
| 85 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.15E-03 |
| 86 | GO:0006098: pentose-phosphate shunt | 4.15E-03 |
| 87 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 4.15E-03 |
| 88 | GO:0000373: Group II intron splicing | 4.15E-03 |
| 89 | GO:1900865: chloroplast RNA modification | 4.65E-03 |
| 90 | GO:0009735: response to cytokinin | 4.81E-03 |
| 91 | GO:0010114: response to red light | 5.12E-03 |
| 92 | GO:0009688: abscisic acid biosynthetic process | 5.18E-03 |
| 93 | GO:0000038: very long-chain fatty acid metabolic process | 5.72E-03 |
| 94 | GO:0008285: negative regulation of cell proliferation | 5.72E-03 |
| 95 | GO:0019684: photosynthesis, light reaction | 5.72E-03 |
| 96 | GO:0006415: translational termination | 5.72E-03 |
| 97 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.72E-03 |
| 98 | GO:0009073: aromatic amino acid family biosynthetic process | 5.72E-03 |
| 99 | GO:0006879: cellular iron ion homeostasis | 5.72E-03 |
| 100 | GO:0006352: DNA-templated transcription, initiation | 5.72E-03 |
| 101 | GO:0009750: response to fructose | 5.72E-03 |
| 102 | GO:0006855: drug transmembrane transport | 5.98E-03 |
| 103 | GO:0010628: positive regulation of gene expression | 6.86E-03 |
| 104 | GO:0006006: glucose metabolic process | 6.86E-03 |
| 105 | GO:0010229: inflorescence development | 6.86E-03 |
| 106 | GO:0006094: gluconeogenesis | 6.86E-03 |
| 107 | GO:0010143: cutin biosynthetic process | 7.46E-03 |
| 108 | GO:0010207: photosystem II assembly | 7.46E-03 |
| 109 | GO:0010540: basipetal auxin transport | 7.46E-03 |
| 110 | GO:0009225: nucleotide-sugar metabolic process | 8.08E-03 |
| 111 | GO:0006487: protein N-linked glycosylation | 9.37E-03 |
| 112 | GO:0016575: histone deacetylation | 1.00E-02 |
| 113 | GO:0010073: meristem maintenance | 1.00E-02 |
| 114 | GO:0061077: chaperone-mediated protein folding | 1.07E-02 |
| 115 | GO:0016226: iron-sulfur cluster assembly | 1.14E-02 |
| 116 | GO:0010227: floral organ abscission | 1.22E-02 |
| 117 | GO:0010584: pollen exine formation | 1.29E-02 |
| 118 | GO:0042335: cuticle development | 1.44E-02 |
| 119 | GO:0010087: phloem or xylem histogenesis | 1.44E-02 |
| 120 | GO:0010182: sugar mediated signaling pathway | 1.52E-02 |
| 121 | GO:0006814: sodium ion transport | 1.60E-02 |
| 122 | GO:0048825: cotyledon development | 1.68E-02 |
| 123 | GO:0000302: response to reactive oxygen species | 1.77E-02 |
| 124 | GO:1901657: glycosyl compound metabolic process | 1.94E-02 |
| 125 | GO:0009911: positive regulation of flower development | 2.30E-02 |
| 126 | GO:0001666: response to hypoxia | 2.30E-02 |
| 127 | GO:0042128: nitrate assimilation | 2.48E-02 |
| 128 | GO:0009409: response to cold | 2.51E-02 |
| 129 | GO:0009817: defense response to fungus, incompatible interaction | 2.77E-02 |
| 130 | GO:0055114: oxidation-reduction process | 2.84E-02 |
| 131 | GO:0000160: phosphorelay signal transduction system | 2.87E-02 |
| 132 | GO:0006499: N-terminal protein myristoylation | 2.97E-02 |
| 133 | GO:0009407: toxin catabolic process | 2.97E-02 |
| 134 | GO:0010218: response to far red light | 2.97E-02 |
| 135 | GO:0009631: cold acclimation | 3.08E-02 |
| 136 | GO:0034599: cellular response to oxidative stress | 3.39E-02 |
| 137 | GO:0009640: photomorphogenesis | 3.93E-02 |
| 138 | GO:0009926: auxin polar transport | 3.93E-02 |
| 139 | GO:0009744: response to sucrose | 3.93E-02 |
| 140 | GO:0009644: response to high light intensity | 4.16E-02 |
| 141 | GO:0009636: response to toxic substance | 4.27E-02 |
| 142 | GO:0032259: methylation | 4.61E-02 |
| 143 | GO:0016042: lipid catabolic process | 4.68E-02 |
| 144 | GO:0009408: response to heat | 4.81E-02 |
| 145 | GO:0006364: rRNA processing | 4.86E-02 |
| 146 | GO:0009736: cytokinin-activated signaling pathway | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 4 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 5 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 6 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 7 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 8 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 9 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0005528: FK506 binding | 1.07E-08 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.75E-06 |
| 13 | GO:0004033: aldo-keto reductase (NADP) activity | 1.40E-04 |
| 14 | GO:0070006: metalloaminopeptidase activity | 1.80E-04 |
| 15 | GO:0016768: spermine synthase activity | 1.80E-04 |
| 16 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.80E-04 |
| 17 | GO:0016168: chlorophyll binding | 2.60E-04 |
| 18 | GO:0004177: aminopeptidase activity | 3.48E-04 |
| 19 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.05E-04 |
| 20 | GO:0008967: phosphoglycolate phosphatase activity | 4.05E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.05E-04 |
| 22 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 4.05E-04 |
| 23 | GO:0047746: chlorophyllase activity | 4.05E-04 |
| 24 | GO:0004089: carbonate dehydratase activity | 4.55E-04 |
| 25 | GO:0031409: pigment binding | 6.38E-04 |
| 26 | GO:0050734: hydroxycinnamoyltransferase activity | 6.61E-04 |
| 27 | GO:0045548: phenylalanine ammonia-lyase activity | 6.61E-04 |
| 28 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.61E-04 |
| 29 | GO:0070402: NADPH binding | 6.61E-04 |
| 30 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.61E-04 |
| 31 | GO:0008508: bile acid:sodium symporter activity | 9.45E-04 |
| 32 | GO:0052655: L-valine transaminase activity | 9.45E-04 |
| 33 | GO:0001872: (1->3)-beta-D-glucan binding | 9.45E-04 |
| 34 | GO:0048487: beta-tubulin binding | 9.45E-04 |
| 35 | GO:0016149: translation release factor activity, codon specific | 9.45E-04 |
| 36 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 9.45E-04 |
| 37 | GO:0052656: L-isoleucine transaminase activity | 9.45E-04 |
| 38 | GO:0052654: L-leucine transaminase activity | 9.45E-04 |
| 39 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.25E-03 |
| 40 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.25E-03 |
| 41 | GO:0016987: sigma factor activity | 1.25E-03 |
| 42 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.25E-03 |
| 43 | GO:0043495: protein anchor | 1.25E-03 |
| 44 | GO:0050378: UDP-glucuronate 4-epimerase activity | 1.25E-03 |
| 45 | GO:0004659: prenyltransferase activity | 1.25E-03 |
| 46 | GO:0001053: plastid sigma factor activity | 1.25E-03 |
| 47 | GO:0005319: lipid transporter activity | 1.25E-03 |
| 48 | GO:0003824: catalytic activity | 1.43E-03 |
| 49 | GO:0050662: coenzyme binding | 1.47E-03 |
| 50 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.59E-03 |
| 51 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.96E-03 |
| 52 | GO:0004332: fructose-bisphosphate aldolase activity | 1.96E-03 |
| 53 | GO:0004130: cytochrome-c peroxidase activity | 1.96E-03 |
| 54 | GO:0016208: AMP binding | 1.96E-03 |
| 55 | GO:0016688: L-ascorbate peroxidase activity | 1.96E-03 |
| 56 | GO:2001070: starch binding | 1.96E-03 |
| 57 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.35E-03 |
| 58 | GO:0008235: metalloexopeptidase activity | 2.77E-03 |
| 59 | GO:0019899: enzyme binding | 2.77E-03 |
| 60 | GO:0015238: drug transmembrane transporter activity | 3.30E-03 |
| 61 | GO:0004222: metalloendopeptidase activity | 3.47E-03 |
| 62 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.67E-03 |
| 63 | GO:0003747: translation release factor activity | 4.15E-03 |
| 64 | GO:0005381: iron ion transmembrane transporter activity | 4.65E-03 |
| 65 | GO:0046872: metal ion binding | 5.50E-03 |
| 66 | GO:0051287: NAD binding | 6.20E-03 |
| 67 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.86E-03 |
| 68 | GO:0031072: heat shock protein binding | 6.86E-03 |
| 69 | GO:0008266: poly(U) RNA binding | 7.46E-03 |
| 70 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.71E-03 |
| 71 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.71E-03 |
| 72 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.71E-03 |
| 73 | GO:0004407: histone deacetylase activity | 9.37E-03 |
| 74 | GO:0051536: iron-sulfur cluster binding | 9.37E-03 |
| 75 | GO:0003723: RNA binding | 1.06E-02 |
| 76 | GO:0022891: substrate-specific transmembrane transporter activity | 1.22E-02 |
| 77 | GO:0019843: rRNA binding | 1.23E-02 |
| 78 | GO:0005509: calcium ion binding | 1.42E-02 |
| 79 | GO:0015297: antiporter activity | 1.63E-02 |
| 80 | GO:0016787: hydrolase activity | 1.67E-02 |
| 81 | GO:0048038: quinone binding | 1.77E-02 |
| 82 | GO:0004518: nuclease activity | 1.85E-02 |
| 83 | GO:0005215: transporter activity | 1.86E-02 |
| 84 | GO:0000156: phosphorelay response regulator activity | 1.94E-02 |
| 85 | GO:0016759: cellulose synthase activity | 2.03E-02 |
| 86 | GO:0008237: metallopeptidase activity | 2.11E-02 |
| 87 | GO:0016597: amino acid binding | 2.20E-02 |
| 88 | GO:0008375: acetylglucosaminyltransferase activity | 2.48E-02 |
| 89 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.48E-02 |
| 90 | GO:0008168: methyltransferase activity | 2.54E-02 |
| 91 | GO:0102483: scopolin beta-glucosidase activity | 2.58E-02 |
| 92 | GO:0030247: polysaccharide binding | 2.58E-02 |
| 93 | GO:0004721: phosphoprotein phosphatase activity | 2.58E-02 |
| 94 | GO:0004683: calmodulin-dependent protein kinase activity | 2.58E-02 |
| 95 | GO:0016788: hydrolase activity, acting on ester bonds | 2.69E-02 |
| 96 | GO:0030246: carbohydrate binding | 3.26E-02 |
| 97 | GO:0008422: beta-glucosidase activity | 3.50E-02 |
| 98 | GO:0050661: NADP binding | 3.60E-02 |
| 99 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.60E-02 |
| 100 | GO:0052689: carboxylic ester hydrolase activity | 3.62E-02 |
| 101 | GO:0004364: glutathione transferase activity | 3.82E-02 |
| 102 | GO:0004871: signal transducer activity | 4.10E-02 |
| 103 | GO:0043621: protein self-association | 4.16E-02 |
| 104 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.16E-02 |
| 105 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.02E-44 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 5.45E-28 |
| 4 | GO:0009570: chloroplast stroma | 4.28E-17 |
| 5 | GO:0009941: chloroplast envelope | 2.41E-13 |
| 6 | GO:0009579: thylakoid | 2.84E-11 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 9.04E-11 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.65E-10 |
| 9 | GO:0009534: chloroplast thylakoid | 9.59E-08 |
| 10 | GO:0031977: thylakoid lumen | 2.57E-06 |
| 11 | GO:0030095: chloroplast photosystem II | 2.08E-05 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 4.22E-05 |
| 13 | GO:0042651: thylakoid membrane | 4.22E-05 |
| 14 | GO:0009523: photosystem II | 1.30E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 1.30E-04 |
| 16 | GO:0009782: photosystem I antenna complex | 1.80E-04 |
| 17 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 1.80E-04 |
| 18 | GO:0031969: chloroplast membrane | 2.28E-04 |
| 19 | GO:0010287: plastoglobule | 2.62E-04 |
| 20 | GO:0030076: light-harvesting complex | 5.74E-04 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 2.77E-03 |
| 22 | GO:0032040: small-subunit processome | 6.28E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 9.83E-03 |
| 24 | GO:0016021: integral component of membrane | 1.34E-02 |
| 25 | GO:0005770: late endosome | 1.52E-02 |
| 26 | GO:0009522: photosystem I | 1.60E-02 |
| 27 | GO:0016020: membrane | 1.86E-02 |
| 28 | GO:0032580: Golgi cisterna membrane | 2.03E-02 |
| 29 | GO:0010319: stromule | 2.11E-02 |
| 30 | GO:0005778: peroxisomal membrane | 2.11E-02 |
| 31 | GO:0030529: intracellular ribonucleoprotein complex | 2.30E-02 |
| 32 | GO:0009707: chloroplast outer membrane | 2.77E-02 |
| 33 | GO:0048046: apoplast | 4.05E-02 |