co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0009768: photosynthesis, light harvesting in photosystem I	3.40E-11
5	GO:0018298: protein-chromophore linkage	4.78E-09
6	GO:0010218: response to far red light	3.12E-07
7	GO:0009769: photosynthesis, light harvesting in photosystem II	6.12E-07
8	GO:0009645: response to low light intensity stimulus	6.12E-07
9	GO:0009409: response to cold	4.30E-06
10	GO:0080167: response to karrikin	7.39E-06
11	GO:0009637: response to blue light	1.45E-05
12	GO:0007623: circadian rhythm	1.95E-05
13	GO:0000380: alternative mRNA splicing, via spliceosome	2.24E-05
14	GO:0010114: response to red light	2.43E-05
15	GO:0009644: response to high light intensity	2.85E-05
16	GO:0015979: photosynthesis	1.13E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.27E-04
18	GO:1902265: abscisic acid homeostasis	1.27E-04
19	GO:0015812: gamma-aminobutyric acid transport	1.27E-04
20	GO:0032958: inositol phosphate biosynthetic process	1.27E-04
21	GO:0051170: nuclear import	2.94E-04
22	GO:0042542: response to hydrogen peroxide	3.34E-04
23	GO:1902448: positive regulation of shade avoidance	4.86E-04
24	GO:0006598: polyamine catabolic process	4.86E-04
25	GO:0006278: RNA-dependent DNA biosynthetic process	4.86E-04
26	GO:0016255: attachment of GPI anchor to protein	4.86E-04
27	GO:0042780: tRNA 3'-end processing	4.86E-04
28	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.86E-04
29	GO:0042256: mature ribosome assembly	4.86E-04
30	GO:0048511: rhythmic process	5.39E-04
31	GO:0009416: response to light stimulus	5.57E-04
32	GO:0010017: red or far-red light signaling pathway	5.89E-04
33	GO:0015749: monosaccharide transport	6.95E-04
34	GO:0006020: inositol metabolic process	6.95E-04
35	GO:0010601: positive regulation of auxin biosynthetic process	6.95E-04
36	GO:0010600: regulation of auxin biosynthetic process	9.21E-04
37	GO:0030104: water homeostasis	9.21E-04
38	GO:0009687: abscisic acid metabolic process	9.21E-04
39	GO:0015743: malate transport	9.21E-04
40	GO:0009765: photosynthesis, light harvesting	9.21E-04
41	GO:2000306: positive regulation of photomorphogenesis	9.21E-04
42	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.16E-03
43	GO:0045962: positive regulation of development, heterochronic	1.43E-03
44	GO:0000741: karyogamy	1.43E-03
45	GO:0009635: response to herbicide	1.43E-03
46	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.71E-03
47	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.71E-03
48	GO:0009414: response to water deprivation	1.83E-03
49	GO:0006355: regulation of transcription, DNA-templated	1.92E-03
50	GO:0007165: signal transduction	1.95E-03
51	GO:0048437: floral organ development	2.01E-03
52	GO:0010161: red light signaling pathway	2.01E-03
53	GO:0009737: response to abscisic acid	2.04E-03
54	GO:0000160: phosphorelay signal transduction system	2.06E-03
55	GO:0010119: regulation of stomatal movement	2.27E-03
56	GO:0010043: response to zinc ion	2.27E-03
57	GO:0009061: anaerobic respiration	2.32E-03
58	GO:0010928: regulation of auxin mediated signaling pathway	2.32E-03
59	GO:0009819: drought recovery	2.32E-03
60	GO:0009415: response to water	2.32E-03
61	GO:0009704: de-etiolation	2.32E-03
62	GO:0032508: DNA duplex unwinding	2.32E-03
63	GO:0045087: innate immune response	2.48E-03
64	GO:0009827: plant-type cell wall modification	2.65E-03
65	GO:0001510: RNA methylation	2.65E-03
66	GO:0010099: regulation of photomorphogenesis	2.65E-03
67	GO:0090333: regulation of stomatal closure	3.00E-03
68	GO:0046916: cellular transition metal ion homeostasis	3.00E-03
69	GO:0009640: photomorphogenesis	3.19E-03
70	GO:0030042: actin filament depolymerization	3.36E-03
71	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.36E-03
72	GO:0008643: carbohydrate transport	3.45E-03
73	GO:0009970: cellular response to sulfate starvation	3.73E-03
74	GO:0006995: cellular response to nitrogen starvation	3.73E-03
75	GO:0055062: phosphate ion homeostasis	3.73E-03
76	GO:0009641: shade avoidance	3.73E-03
77	GO:0055085: transmembrane transport	3.81E-03
78	GO:0009585: red, far-red light phototransduction	4.29E-03
79	GO:0016925: protein sumoylation	4.52E-03
80	GO:0009718: anthocyanin-containing compound biosynthetic process	4.93E-03
81	GO:0007015: actin filament organization	5.36E-03
82	GO:0009266: response to temperature stimulus	5.36E-03
83	GO:0019853: L-ascorbic acid biosynthetic process	5.80E-03
84	GO:0090351: seedling development	5.80E-03
85	GO:0010030: positive regulation of seed germination	5.80E-03
86	GO:0006406: mRNA export from nucleus	6.71E-03
87	GO:0009269: response to desiccation	7.68E-03
88	GO:0003333: amino acid transmembrane transport	7.68E-03
89	GO:0071215: cellular response to abscisic acid stimulus	8.69E-03
90	GO:0006012: galactose metabolic process	8.69E-03
91	GO:0045492: xylan biosynthetic process	9.21E-03
92	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.75E-03
93	GO:0042391: regulation of membrane potential	1.03E-02
94	GO:0010501: RNA secondary structure unwinding	1.03E-02
95	GO:0009735: response to cytokinin	1.09E-02
96	GO:0010197: polar nucleus fusion	1.09E-02
97	GO:0046323: glucose import	1.09E-02
98	GO:0010228: vegetative to reproductive phase transition of meristem	1.10E-02
99	GO:0006814: sodium ion transport	1.14E-02
100	GO:0042752: regulation of circadian rhythm	1.14E-02
101	GO:0009738: abscisic acid-activated signaling pathway	1.18E-02
102	GO:0009556: microsporogenesis	1.20E-02
103	GO:0035556: intracellular signal transduction	1.31E-02
104	GO:0006952: defense response	1.32E-02
105	GO:1901657: glycosyl compound metabolic process	1.38E-02
106	GO:0010286: heat acclimation	1.50E-02
107	GO:0009651: response to salt stress	1.57E-02
108	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.70E-02
109	GO:0010029: regulation of seed germination	1.70E-02
110	GO:0006970: response to osmotic stress	1.76E-02
111	GO:0015995: chlorophyll biosynthetic process	1.83E-02
112	GO:0048573: photoperiodism, flowering	1.83E-02
113	GO:0009817: defense response to fungus, incompatible interaction	1.97E-02
114	GO:0010200: response to chitin	2.10E-02
115	GO:0006811: ion transport	2.11E-02
116	GO:0009631: cold acclimation	2.19E-02
117	GO:0045892: negative regulation of transcription, DNA-templated	2.47E-02
118	GO:0006839: mitochondrial transport	2.56E-02
119	GO:0030001: metal ion transport	2.56E-02
120	GO:0009965: leaf morphogenesis	3.04E-02
121	GO:0000165: MAPK cascade	3.20E-02
122	GO:0006812: cation transport	3.29E-02
123	GO:0006351: transcription, DNA-templated	3.77E-02
124	GO:0009553: embryo sac development	4.35E-02
125	GO:0009624: response to nematode	4.44E-02
126	GO:0006396: RNA processing	4.53E-02
127	GO:0009908: flower development	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
5	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
6	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0031409: pigment binding	1.63E-11
11	GO:0016168: chlorophyll binding	2.37E-09
12	GO:0046870: cadmium ion binding	1.27E-04
13	GO:0000828: inositol hexakisphosphate kinase activity	1.27E-04
14	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.27E-04
15	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.27E-04
16	GO:0009679: hexose:proton symporter activity	1.27E-04
17	GO:0000829: inositol heptakisphosphate kinase activity	1.27E-04
18	GO:0080079: cellobiose glucosidase activity	1.27E-04
19	GO:0004839: ubiquitin activating enzyme activity	2.94E-04
20	GO:0003923: GPI-anchor transamidase activity	2.94E-04
21	GO:0015180: L-alanine transmembrane transporter activity	2.94E-04
22	GO:0032791: lead ion binding	2.94E-04
23	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.94E-04
24	GO:0046872: metal ion binding	4.15E-04
25	GO:0017150: tRNA dihydrouridine synthase activity	4.86E-04
26	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.86E-04
27	GO:0004096: catalase activity	4.86E-04
28	GO:0046592: polyamine oxidase activity	4.86E-04
29	GO:0019948: SUMO activating enzyme activity	4.86E-04
30	GO:0015181: arginine transmembrane transporter activity	6.95E-04
31	GO:0015189: L-lysine transmembrane transporter activity	6.95E-04
32	GO:0005313: L-glutamate transmembrane transporter activity	9.21E-04
33	GO:0005253: anion channel activity	9.21E-04
34	GO:0015145: monosaccharide transmembrane transporter activity	1.16E-03
35	GO:0008641: small protein activating enzyme activity	1.16E-03
36	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.16E-03
37	GO:0010294: abscisic acid glucosyltransferase activity	1.16E-03
38	GO:0000156: phosphorelay response regulator activity	1.20E-03
39	GO:0004629: phospholipase C activity	1.43E-03
40	GO:0015562: efflux transmembrane transporter activity	1.43E-03
41	GO:0000293: ferric-chelate reductase activity	1.43E-03
42	GO:0005351: sugar:proton symporter activity	1.54E-03
43	GO:0004435: phosphatidylinositol phospholipase C activity	1.71E-03
44	GO:0015140: malate transmembrane transporter activity	2.01E-03
45	GO:0004033: aldo-keto reductase (NADP) activity	2.32E-03
46	GO:0004525: ribonuclease III activity	2.32E-03
47	GO:0005515: protein binding	2.76E-03
48	GO:0000989: transcription factor activity, transcription factor binding	3.00E-03
49	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.00E-03
50	GO:0004177: aminopeptidase activity	4.12E-03
51	GO:0047372: acylglycerol lipase activity	4.12E-03
52	GO:0004565: beta-galactosidase activity	4.93E-03
53	GO:0005315: inorganic phosphate transmembrane transporter activity	4.93E-03
54	GO:0008131: primary amine oxidase activity	5.36E-03
55	GO:0003712: transcription cofactor activity	5.80E-03
56	GO:0030552: cAMP binding	5.80E-03
57	GO:0030553: cGMP binding	5.80E-03
58	GO:0005216: ion channel activity	7.19E-03
59	GO:0008324: cation transmembrane transporter activity	7.19E-03
60	GO:0004707: MAP kinase activity	7.68E-03
61	GO:0003964: RNA-directed DNA polymerase activity	7.68E-03
62	GO:0019706: protein-cysteine S-palmitoyltransferase activity	7.68E-03
63	GO:0015144: carbohydrate transmembrane transporter activity	9.12E-03
64	GO:0008514: organic anion transmembrane transporter activity	9.21E-03
65	GO:0015297: antiporter activity	1.00E-02
66	GO:0030551: cyclic nucleotide binding	1.03E-02
67	GO:0005249: voltage-gated potassium channel activity	1.03E-02
68	GO:0008168: methyltransferase activity	1.57E-02
69	GO:0102483: scopolin beta-glucosidase activity	1.83E-02
70	GO:0050897: cobalt ion binding	2.19E-02
71	GO:0003697: single-stranded DNA binding	2.33E-02
72	GO:0008422: beta-glucosidase activity	2.48E-02
73	GO:0003677: DNA binding	2.73E-02
74	GO:0005198: structural molecule activity	3.04E-02
75	GO:0015293: symporter activity	3.04E-02
76	GO:0043565: sequence-specific DNA binding	3.20E-02
77	GO:0003824: catalytic activity	3.34E-02
78	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.53E-02
79	GO:0003690: double-stranded DNA binding	3.54E-02
80	GO:0015171: amino acid transmembrane transporter activity	3.72E-02
81	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.16E-02
82	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.16E-02
83	GO:0016874: ligase activity	4.26E-02
84	GO:0022857: transmembrane transporter activity	4.26E-02
85	GO:0003779: actin binding	4.35E-02
86	GO:0003729: mRNA binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	3.50E-10
2	GO:0030076: light-harvesting complex	1.51E-09
3	GO:0009523: photosystem II	3.28E-08
4	GO:0010287: plastoglobule	3.32E-07
5	GO:0009579: thylakoid	1.92E-05
6	GO:0009534: chloroplast thylakoid	1.48E-04
7	GO:0042765: GPI-anchor transamidase complex	4.86E-04
8	GO:0042651: thylakoid membrane	4.91E-04
9	GO:0009535: chloroplast thylakoid membrane	6.28E-04
10	GO:0016021: integral component of membrane	6.81E-04
11	GO:0009517: PSII associated light-harvesting complex II	9.21E-04
12	GO:0016020: membrane	1.64E-03
13	GO:0009941: chloroplast envelope	3.17E-03
14	GO:0005777: peroxisome	3.27E-03
15	GO:0031966: mitochondrial membrane	3.99E-03
16	GO:0005622: intracellular	6.35E-03
17	GO:0005618: cell wall	6.90E-03
18	GO:0015629: actin cytoskeleton	8.69E-03
19	GO:0031965: nuclear membrane	1.20E-02
20	GO:0009507: chloroplast	1.27E-02
21	GO:0005886: plasma membrane	1.68E-02
22	GO:0000786: nucleosome	2.26E-02
23	GO:0005773: vacuole	3.41E-02
24	GO:0009505: plant-type cell wall	3.94E-02
25	GO:0016607: nuclear speck	3.98E-02
26	GO:0005887: integral component of plasma membrane	4.05E-02