co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
9	GO:0009768: photosynthesis, light harvesting in photosystem I	1.85E-12
10	GO:0018298: protein-chromophore linkage	1.09E-11
11	GO:0015979: photosynthesis	1.88E-08
12	GO:0010218: response to far red light	3.77E-08
13	GO:0009637: response to blue light	5.93E-08
14	GO:0010114: response to red light	1.35E-07
15	GO:0009644: response to high light intensity	1.73E-07
16	GO:0007623: circadian rhythm	3.04E-07
17	GO:0009769: photosynthesis, light harvesting in photosystem II	1.62E-06
18	GO:0009645: response to low light intensity stimulus	1.62E-06
19	GO:0035556: intracellular signal transduction	8.67E-06
20	GO:0010600: regulation of auxin biosynthetic process	2.66E-05
21	GO:0042542: response to hydrogen peroxide	6.44E-05
22	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	8.84E-05
23	GO:0010928: regulation of auxin mediated signaling pathway	1.51E-04
24	GO:0009409: response to cold	1.78E-04
25	GO:0015812: gamma-aminobutyric acid transport	1.88E-04
26	GO:0032958: inositol phosphate biosynthetic process	1.88E-04
27	GO:0006369: termination of RNA polymerase II transcription	1.88E-04
28	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.88E-04
29	GO:0010362: negative regulation of anion channel activity by blue light	1.88E-04
30	GO:0080167: response to karrikin	2.60E-04
31	GO:0009416: response to light stimulus	3.31E-04
32	GO:0000160: phosphorelay signal transduction system	4.01E-04
33	GO:0048255: mRNA stabilization	4.24E-04
34	GO:0051170: nuclear import	4.24E-04
35	GO:1902884: positive regulation of response to oxidative stress	4.24E-04
36	GO:0010155: regulation of proton transport	4.24E-04
37	GO:0006883: cellular sodium ion homeostasis	4.24E-04
38	GO:0048833: specification of floral organ number	4.24E-04
39	GO:0009737: response to abscisic acid	5.77E-04
40	GO:0006355: regulation of transcription, DNA-templated	6.11E-04
41	GO:0006598: polyamine catabolic process	6.92E-04
42	GO:1901562: response to paraquat	6.92E-04
43	GO:1902448: positive regulation of shade avoidance	6.92E-04
44	GO:0003333: amino acid transmembrane transport	9.07E-04
45	GO:0048511: rhythmic process	9.07E-04
46	GO:0044211: CTP salvage	9.86E-04
47	GO:1901332: negative regulation of lateral root development	9.86E-04
48	GO:0006020: inositol metabolic process	9.86E-04
49	GO:0010601: positive regulation of auxin biosynthetic process	9.86E-04
50	GO:0010017: red or far-red light signaling pathway	9.89E-04
51	GO:0009585: red, far-red light phototransduction	1.02E-03
52	GO:0006012: galactose metabolic process	1.07E-03
53	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.26E-03
54	GO:0009414: response to water deprivation	1.30E-03
55	GO:1901002: positive regulation of response to salt stress	1.31E-03
56	GO:0015846: polyamine transport	1.31E-03
57	GO:0030104: water homeostasis	1.31E-03
58	GO:0044206: UMP salvage	1.31E-03
59	GO:0048442: sepal development	1.31E-03
60	GO:0009765: photosynthesis, light harvesting	1.31E-03
61	GO:2000306: positive regulation of photomorphogenesis	1.31E-03
62	GO:0043097: pyrimidine nucleoside salvage	1.66E-03
63	GO:0009904: chloroplast accumulation movement	1.66E-03
64	GO:0016123: xanthophyll biosynthetic process	1.66E-03
65	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.66E-03
66	GO:0006351: transcription, DNA-templated	1.79E-03
67	GO:0045892: negative regulation of transcription, DNA-templated	1.90E-03
68	GO:0045962: positive regulation of development, heterochronic	2.05E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	2.05E-03
70	GO:0009635: response to herbicide	2.05E-03
71	GO:0010286: heat acclimation	2.30E-03
72	GO:0045926: negative regulation of growth	2.46E-03
73	GO:0009903: chloroplast avoidance movement	2.46E-03
74	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.46E-03
75	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.46E-03
76	GO:0009408: response to heat	2.56E-03
77	GO:0010029: regulation of seed germination	2.73E-03
78	GO:0048437: floral organ development	2.90E-03
79	GO:0010196: nonphotochemical quenching	2.90E-03
80	GO:0010038: response to metal ion	2.90E-03
81	GO:0010044: response to aluminum ion	2.90E-03
82	GO:0010161: red light signaling pathway	2.90E-03
83	GO:0015995: chlorophyll biosynthetic process	3.04E-03
84	GO:0009817: defense response to fungus, incompatible interaction	3.36E-03
85	GO:0009819: drought recovery	3.36E-03
86	GO:0010078: maintenance of root meristem identity	3.36E-03
87	GO:0009704: de-etiolation	3.36E-03
88	GO:0009827: plant-type cell wall modification	3.84E-03
89	GO:0010099: regulation of photomorphogenesis	3.84E-03
90	GO:0010119: regulation of stomatal movement	3.88E-03
91	GO:0010468: regulation of gene expression	3.95E-03
92	GO:0090333: regulation of stomatal closure	4.35E-03
93	GO:0030042: actin filament depolymerization	4.87E-03
94	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.87E-03
95	GO:0008356: asymmetric cell division	4.87E-03
96	GO:0009638: phototropism	4.87E-03
97	GO:0009651: response to salt stress	5.09E-03
98	GO:0010162: seed dormancy process	5.42E-03
99	GO:0009970: cellular response to sulfate starvation	5.42E-03
100	GO:0055062: phosphate ion homeostasis	5.42E-03
101	GO:0048441: petal development	5.42E-03
102	GO:0006535: cysteine biosynthetic process from serine	5.42E-03
103	GO:0009688: abscisic acid biosynthetic process	5.42E-03
104	GO:0009641: shade avoidance	5.42E-03
105	GO:0009640: photomorphogenesis	5.48E-03
106	GO:0007165: signal transduction	5.80E-03
107	GO:0008643: carbohydrate transport	5.93E-03
108	GO:0046856: phosphatidylinositol dephosphorylation	5.99E-03
109	GO:0006970: response to osmotic stress	6.04E-03
110	GO:0000165: MAPK cascade	6.63E-03
111	GO:0009785: blue light signaling pathway	7.19E-03
112	GO:0050826: response to freezing	7.19E-03
113	GO:0018107: peptidyl-threonine phosphorylation	7.19E-03
114	GO:0009718: anthocyanin-containing compound biosynthetic process	7.19E-03
115	GO:0048440: carpel development	7.82E-03
116	GO:0010207: photosystem II assembly	7.82E-03
117	GO:0007015: actin filament organization	7.82E-03
118	GO:0009266: response to temperature stimulus	7.82E-03
119	GO:0044550: secondary metabolite biosynthetic process	8.04E-03
120	GO:0019853: L-ascorbic acid biosynthetic process	8.47E-03
121	GO:0090351: seedling development	8.47E-03
122	GO:0019344: cysteine biosynthetic process	9.83E-03
123	GO:0009269: response to desiccation	1.13E-02
124	GO:0010431: seed maturation	1.13E-02
125	GO:0019748: secondary metabolic process	1.20E-02
126	GO:0009693: ethylene biosynthetic process	1.28E-02
127	GO:0071215: cellular response to abscisic acid stimulus	1.28E-02
128	GO:0048443: stamen development	1.35E-02
129	GO:0045492: xylan biosynthetic process	1.35E-02
130	GO:0000226: microtubule cytoskeleton organization	1.51E-02
131	GO:0010182: sugar mediated signaling pathway	1.60E-02
132	GO:0006814: sodium ion transport	1.68E-02
133	GO:0042752: regulation of circadian rhythm	1.68E-02
134	GO:0009556: microsporogenesis	1.77E-02
135	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.85E-02
136	GO:0000302: response to reactive oxygen species	1.85E-02
137	GO:1901657: glycosyl compound metabolic process	2.03E-02
138	GO:0009739: response to gibberellin	2.04E-02
139	GO:0019760: glucosinolate metabolic process	2.13E-02
140	GO:0009738: abscisic acid-activated signaling pathway	2.35E-02
141	GO:0016126: sterol biosynthetic process	2.41E-02
142	GO:0048573: photoperiodism, flowering	2.71E-02
143	GO:0009658: chloroplast organization	2.83E-02
144	GO:0009813: flavonoid biosynthetic process	3.02E-02
145	GO:0007049: cell cycle	3.16E-02
146	GO:0009631: cold acclimation	3.23E-02
147	GO:0009723: response to ethylene	3.27E-02
148	GO:0006865: amino acid transport	3.34E-02
149	GO:0055114: oxidation-reduction process	3.40E-02
150	GO:0016051: carbohydrate biosynthetic process	3.45E-02
151	GO:0051707: response to other organism	4.13E-02
152	GO:0009965: leaf morphogenesis	4.48E-02
153	GO:0042538: hyperosmotic salinity response	4.85E-02
154	GO:0032259: methylation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
7	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
8	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
11	GO:0031409: pigment binding	7.78E-13
12	GO:0016168: chlorophyll binding	2.63E-10
13	GO:0046872: metal ion binding	4.20E-05
14	GO:0004707: MAP kinase activity	5.45E-05
15	GO:0000828: inositol hexakisphosphate kinase activity	1.88E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.88E-04
17	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.88E-04
18	GO:0000829: inositol heptakisphosphate kinase activity	1.88E-04
19	GO:0080079: cellobiose glucosidase activity	1.88E-04
20	GO:0017091: AU-rich element binding	1.88E-04
21	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.24E-04
22	GO:0008728: GTP diphosphokinase activity	4.24E-04
23	GO:0015180: L-alanine transmembrane transporter activity	4.24E-04
24	GO:0080045: quercetin 3'-O-glucosyltransferase activity	4.24E-04
25	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.24E-04
26	GO:0005515: protein binding	5.83E-04
27	GO:0046592: polyamine oxidase activity	6.92E-04
28	GO:0015181: arginine transmembrane transporter activity	9.86E-04
29	GO:0015203: polyamine transmembrane transporter activity	9.86E-04
30	GO:0009882: blue light photoreceptor activity	9.86E-04
31	GO:0009001: serine O-acetyltransferase activity	9.86E-04
32	GO:0015189: L-lysine transmembrane transporter activity	9.86E-04
33	GO:0000254: C-4 methylsterol oxidase activity	9.86E-04
34	GO:0005313: L-glutamate transmembrane transporter activity	1.31E-03
35	GO:0005253: anion channel activity	1.31E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	1.31E-03
37	GO:0003677: DNA binding	1.48E-03
38	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.66E-03
39	GO:0000156: phosphorelay response regulator activity	2.04E-03
40	GO:0004629: phospholipase C activity	2.05E-03
41	GO:0005247: voltage-gated chloride channel activity	2.05E-03
42	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.05E-03
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.17E-03
44	GO:0004849: uridine kinase activity	2.46E-03
45	GO:0004435: phosphatidylinositol phospholipase C activity	2.46E-03
46	GO:0015297: antiporter activity	2.98E-03
47	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.32E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	3.36E-03
49	GO:0001104: RNA polymerase II transcription cofactor activity	3.84E-03
50	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.84E-03
51	GO:0071949: FAD binding	4.35E-03
52	GO:0000989: transcription factor activity, transcription factor binding	4.35E-03
53	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.35E-03
54	GO:0015174: basic amino acid transmembrane transporter activity	4.87E-03
55	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.42E-03
56	GO:0047372: acylglycerol lipase activity	5.99E-03
57	GO:0015293: symporter activity	6.15E-03
58	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.58E-03
59	GO:0016301: kinase activity	6.58E-03
60	GO:0004565: beta-galactosidase activity	7.19E-03
61	GO:0004022: alcohol dehydrogenase (NAD) activity	7.19E-03
62	GO:0005315: inorganic phosphate transmembrane transporter activity	7.19E-03
63	GO:0000155: phosphorelay sensor kinase activity	7.19E-03
64	GO:0019888: protein phosphatase regulator activity	7.19E-03
65	GO:0004497: monooxygenase activity	7.22E-03
66	GO:0008131: primary amine oxidase activity	7.82E-03
67	GO:0015171: amino acid transmembrane transporter activity	8.18E-03
68	GO:0003712: transcription cofactor activity	8.47E-03
69	GO:0004190: aspartic-type endopeptidase activity	8.47E-03
70	GO:0008270: zinc ion binding	9.76E-03
71	GO:0004672: protein kinase activity	9.80E-03
72	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.13E-02
73	GO:0004674: protein serine/threonine kinase activity	1.16E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.35E-02
75	GO:0010181: FMN binding	1.68E-02
76	GO:0005506: iron ion binding	1.73E-02
77	GO:0005351: sugar:proton symporter activity	1.78E-02
78	GO:0005215: transporter activity	2.06E-02
79	GO:0102483: scopolin beta-glucosidase activity	2.71E-02
80	GO:0008168: methyltransferase activity	2.72E-02
81	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.12E-02
82	GO:0050897: cobalt ion binding	3.23E-02
83	GO:0008233: peptidase activity	3.44E-02
84	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.45E-02
85	GO:0008422: beta-glucosidase activity	3.67E-02
86	GO:0019825: oxygen binding	3.80E-02
87	GO:0004185: serine-type carboxypeptidase activity	4.13E-02
88	GO:0005198: structural molecule activity	4.48E-02
89	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	2.84E-11
2	GO:0030076: light-harvesting complex	6.45E-11
3	GO:0010287: plastoglobule	2.96E-09
4	GO:0009534: chloroplast thylakoid	1.32E-07
5	GO:0009523: photosystem II	1.45E-07
6	GO:0009535: chloroplast thylakoid membrane	9.80E-07
7	GO:0009941: chloroplast envelope	1.17E-06
8	GO:0009579: thylakoid	1.43E-06
9	GO:0009517: PSII associated light-harvesting complex II	2.66E-05
10	GO:0009898: cytoplasmic side of plasma membrane	2.66E-05
11	GO:0042651: thylakoid membrane	4.69E-05
12	GO:0009783: photosystem II antenna complex	1.88E-04
13	GO:0032586: protein storage vacuole membrane	1.31E-03
14	GO:0030660: Golgi-associated vesicle membrane	1.31E-03
15	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.31E-03
16	GO:0016021: integral component of membrane	1.60E-03
17	GO:0070847: core mediator complex	2.05E-03
18	GO:0034707: chloride channel complex	2.05E-03
19	GO:0009986: cell surface	2.90E-03
20	GO:0009533: chloroplast stromal thylakoid	2.90E-03
21	GO:0009538: photosystem I reaction center	3.36E-03
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.36E-03
23	GO:0000326: protein storage vacuole	3.84E-03
24	GO:0010494: cytoplasmic stress granule	4.35E-03
25	GO:0005634: nucleus	5.66E-03
26	GO:0000159: protein phosphatase type 2A complex	5.99E-03
27	GO:0005765: lysosomal membrane	5.99E-03
28	GO:0009507: chloroplast	8.59E-03
29	GO:0010008: endosome membrane	9.02E-03
30	GO:0009706: chloroplast inner membrane	1.05E-02
31	GO:0016020: membrane	1.21E-02
32	GO:0015629: actin cytoskeleton	1.28E-02
33	GO:0005622: intracellular	1.46E-02
34	GO:0016592: mediator complex	1.94E-02
35	GO:0000932: P-body	2.41E-02
36	GO:0000151: ubiquitin ligase complex	2.91E-02
37	GO:0031969: chloroplast membrane	3.50E-02
38	GO:0005802: trans-Golgi network	4.39E-02
39	GO:0031966: mitochondrial membrane	4.85E-02