co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G899300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019725: cellular homeostasis	0.00E+00
2	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
3	GO:0006233: dTDP biosynthetic process	0.00E+00
4	GO:0071586: CAAX-box protein processing	0.00E+00
5	GO:0045694: regulation of embryo sac egg cell differentiation	0.00E+00
6	GO:0080120: CAAX-box protein maturation	0.00E+00
7	GO:0010165: response to X-ray	0.00E+00
8	GO:0006260: DNA replication	1.32E-06
9	GO:0006281: DNA repair	6.86E-06
10	GO:0016571: histone methylation	1.95E-05
11	GO:0010389: regulation of G2/M transition of mitotic cell cycle	1.95E-05
12	GO:0007062: sister chromatid cohesion	4.23E-05
13	GO:0051276: chromosome organization	8.81E-05
14	GO:0048449: floral organ formation	1.84E-04
15	GO:0010074: maintenance of meristem identity	1.84E-04
16	GO:0006342: chromatin silencing	2.45E-04
17	GO:0009909: regulation of flower development	2.67E-04
18	GO:0080141: regulation of jasmonic acid biosynthetic process	2.98E-04
19	GO:0003002: regionalization	2.98E-04
20	GO:0010425: DNA methylation on cytosine within a CNG sequence	2.98E-04
21	GO:0051512: positive regulation of unidimensional cell growth	2.98E-04
22	GO:0030307: positive regulation of cell growth	2.98E-04
23	GO:0010587: miRNA catabolic process	2.98E-04
24	GO:0009968: negative regulation of signal transduction	2.98E-04
25	GO:0043157: response to cation stress	2.98E-04
26	GO:0019915: lipid storage	4.83E-04
27	GO:0006406: mRNA export from nucleus	6.88E-04
28	GO:0045814: negative regulation of gene expression, epigenetic	7.00E-04
29	GO:0042547: cell wall modification involved in multidimensional cell growth	7.00E-04
30	GO:0010069: zygote asymmetric cytokinesis in embryo sac	7.00E-04
31	GO:0009755: hormone-mediated signaling pathway	7.00E-04
32	GO:0018279: protein N-linked glycosylation via asparagine	7.00E-04
33	GO:0010162: seed dormancy process	8.06E-04
34	GO:0050826: response to freezing	9.33E-04
35	GO:0022904: respiratory electron transport chain	1.20E-03
36	GO:0006310: DNA recombination	1.22E-03
37	GO:0010182: sugar mediated signaling pathway	1.53E-03
38	GO:0045893: positive regulation of transcription, DNA-templated	1.62E-03
39	GO:0006401: RNA catabolic process	1.75E-03
40	GO:0090116: C-5 methylation of cytosine	1.75E-03
41	GO:0006790: sulfur compound metabolic process	1.75E-03
42	GO:0009845: seed germination	2.07E-03
43	GO:0033044: regulation of chromosome organization	2.34E-03
44	GO:0009933: meristem structural organization	2.46E-03
45	GO:0006275: regulation of DNA replication	2.46E-03
46	GO:0045132: meiotic chromosome segregation	3.00E-03
47	GO:0009913: epidermal cell differentiation	3.00E-03
48	GO:0007267: cell-cell signaling	3.00E-03
49	GO:0009410: response to xenobiotic stimulus	3.00E-03
50	GO:0007005: mitochondrion organization	3.00E-03
51	GO:0006561: proline biosynthetic process	3.00E-03
52	GO:0016579: protein deubiquitination	3.15E-03
53	GO:0009934: regulation of meristem structural organization	3.75E-03
54	GO:0006325: chromatin organization	3.75E-03
55	GO:0007155: cell adhesion	3.75E-03
56	GO:0000741: karyogamy	4.56E-03
57	GO:0030245: cellulose catabolic process	4.56E-03
58	GO:0009628: response to abiotic stimulus	4.56E-03
59	GO:0051567: histone H3-K9 methylation	4.86E-03
60	GO:0009640: photomorphogenesis	5.17E-03
61	GO:0042138: meiotic DNA double-strand break formation	5.38E-03
62	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.38E-03
63	GO:0016572: histone phosphorylation	5.38E-03
64	GO:0006302: double-strand break repair	5.38E-03
65	GO:0048765: root hair cell differentiation	5.38E-03
66	GO:0006306: DNA methylation	5.50E-03
67	GO:0008284: positive regulation of cell proliferation	6.28E-03
68	GO:0009955: adaxial/abaxial pattern specification	6.28E-03
69	GO:0008283: cell proliferation	6.95E-03
70	GO:0009616: virus induced gene silencing	7.24E-03
71	GO:0016570: histone modification	7.24E-03
72	GO:0048453: sepal formation	7.24E-03
73	GO:0045010: actin nucleation	7.24E-03
74	GO:0010048: vernalization response	7.24E-03
75	GO:0006284: base-excision repair	7.24E-03
76	GO:0006312: mitotic recombination	7.24E-03
77	GO:0010228: vegetative to reproductive phase transition of meristem	7.35E-03
78	GO:0007018: microtubule-based movement	7.75E-03
79	GO:0048451: petal formation	8.22E-03
80	GO:0006974: cellular response to DNA damage stimulus	8.22E-03
81	GO:0046854: phosphatidylinositol phosphorylation	9.26E-03
82	GO:0006487: protein N-linked glycosylation	1.03E-02
83	GO:0043687: post-translational protein modification	1.03E-02
84	GO:0006446: regulation of translational initiation	1.15E-02
85	GO:0007131: reciprocal meiotic recombination	1.15E-02
86	GO:0009294: DNA mediated transformation	1.15E-02
87	GO:0016049: cell growth	1.26E-02
88	GO:0001731: formation of translation preinitiation complex	1.26E-02
89	GO:0000724: double-strand break repair via homologous recombination	1.38E-02
90	GO:0042023: DNA endoreduplication	1.38E-02
91	GO:0034968: histone lysine methylation	1.38E-02
92	GO:0000902: cell morphogenesis	1.38E-02
93	GO:0010267: production of ta-siRNAs involved in RNA interference	1.51E-02
94	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.51E-02
95	GO:0010090: trichome morphogenesis	1.77E-02
96	GO:0000278: mitotic cell cycle	1.91E-02
97	GO:0048367: shoot system development	1.91E-02
98	GO:0009738: abscisic acid-activated signaling pathway	2.05E-02
99	GO:0016567: protein ubiquitination	2.55E-02
100	GO:0009560: embryo sac egg cell differentiation	2.65E-02
101	GO:0048573: photoperiodism, flowering	2.81E-02
102	GO:0048193: Golgi vesicle transport	2.81E-02
103	GO:0007049: cell cycle	2.81E-02
104	GO:0048366: leaf development	3.14E-02
105	GO:0009860: pollen tube growth	3.31E-02
106	GO:0009790: embryo development	3.31E-02
107	GO:0048481: plant ovule development	4.01E-02
108	GO:0000398: mRNA splicing, via spliceosome	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0004798: thymidylate kinase activity	0.00E+00
2	GO:0008409: 5'-3' exonuclease activity	0.00E+00
3	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.98E-04
4	GO:0019905: syntaxin binding	2.98E-04
5	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.98E-04
6	GO:0017108: 5'-flap endonuclease activity	2.98E-04
7	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	7.00E-04
8	GO:0019204: obsolete nucleotide phosphatase activity	7.00E-04
9	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	1.20E-03
10	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.75E-03
11	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.34E-03
12	GO:0003713: transcription coactivator activity	3.00E-03
13	GO:0008810: cellulase activity	3.75E-03
14	GO:0019904: protein domain specific binding	4.56E-03
15	GO:0043022: ribosome binding	4.56E-03
16	GO:0008237: metallopeptidase activity	7.24E-03
17	GO:0031418: L-ascorbic acid binding	7.24E-03
18	GO:0004518: nuclease activity	7.24E-03
19	GO:0030955: potassium ion binding	7.24E-03
20	GO:0004743: pyruvate kinase activity	7.24E-03
21	GO:0003777: microtubule motor activity	7.75E-03
22	GO:0018024: histone-lysine N-methyltransferase activity	8.22E-03
23	GO:0003690: double-stranded DNA binding	8.22E-03
24	GO:0004519: endonuclease activity	9.26E-03
25	GO:0004527: exonuclease activity	1.15E-02
26	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.26E-02
27	GO:0003743: translation initiation factor activity	1.90E-02
28	GO:0042393: histone binding	2.05E-02
29	GO:0004222: metalloendopeptidase activity	2.20E-02
30	GO:0004175: endopeptidase activity	2.20E-02
31	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.97E-02
32	GO:0000287: magnesium ion binding	3.21E-02
33	GO:0003677: DNA binding	3.62E-02
34	GO:0008026: ATP-dependent helicase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.98E-04
3	GO:0031307: integral component of mitochondrial outer membrane	2.98E-04
4	GO:0008250: oligosaccharyltransferase complex	7.00E-04
5	GO:0005971: ribonucleoside-diphosphate reductase complex	1.20E-03
6	GO:0000808: origin recognition complex	1.20E-03
7	GO:0005654: nucleoplasm	1.22E-03
8	GO:0030915: Smc5-Smc6 complex	1.75E-03
9	GO:0005635: nuclear envelope	2.07E-03
10	GO:0005634: nucleus	3.62E-03
11	GO:0005871: kinesin complex	7.35E-03
12	GO:0005681: spliceosomal complex	8.22E-03
13	GO:0005741: mitochondrial outer membrane	1.03E-02
14	GO:0033290: eukaryotic 48S preinitiation complex	1.26E-02
15	GO:0016282: eukaryotic 43S preinitiation complex	1.26E-02
16	GO:0005852: eukaryotic translation initiation factor 3 complex	1.38E-02
17	GO:0031966: mitochondrial membrane	1.51E-02
18	GO:0005694: chromosome	3.03E-02
19	GO:0005875: microtubule associated complex	3.31E-02
20	GO:0045271: respiratory chain complex I	4.77E-02