co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G854533

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
2	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
10	GO:0009234: menaquinone biosynthetic process	0.00E+00
11	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
12	GO:0043953: protein transport by the Tat complex	0.00E+00
13	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
14	GO:1901259: chloroplast rRNA processing	0.00E+00
15	GO:0010028: xanthophyll cycle	0.00E+00
16	GO:0035436: triose phosphate transmembrane transport	0.00E+00
17	GO:0090342: regulation of cell aging	0.00E+00
18	GO:0015714: phosphoenolpyruvate transport	0.00E+00
19	GO:0032544: plastid translation	0.00E+00
20	GO:0042372: phylloquinone biosynthetic process	0.00E+00
21	GO:0071486: cellular response to high light intensity	0.00E+00
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.20E-23
23	GO:0010027: thylakoid membrane organization	1.13E-20
24	GO:0010207: photosystem II assembly	4.55E-15
25	GO:0042793: transcription from plastid promoter	1.83E-12
26	GO:0006364: rRNA processing	6.35E-11
27	GO:0015995: chlorophyll biosynthetic process	7.44E-11
28	GO:0016226: iron-sulfur cluster assembly	7.68E-11
29	GO:0009902: chloroplast relocation	8.35E-11
30	GO:0006098: pentose-phosphate shunt	1.68E-10
31	GO:0045036: protein targeting to chloroplast	3.10E-09
32	GO:0006655: phosphatidylglycerol biosynthetic process	6.42E-09
33	GO:0006412: translation	2.96E-08
34	GO:0009106: lipoate metabolic process	5.53E-08
35	GO:0006766: vitamin metabolic process	5.53E-08
36	GO:0009108: coenzyme biosynthetic process	5.53E-08
37	GO:0006546: glycine catabolic process	7.20E-08
38	GO:0009658: chloroplast organization	8.53E-08
39	GO:0045038: protein import into chloroplast thylakoid membrane	8.70E-08
40	GO:0000096: sulfur amino acid metabolic process	4.88E-07
41	GO:0019748: secondary metabolic process	4.88E-07
42	GO:0006418: tRNA aminoacylation for protein translation	1.25E-06
43	GO:0006779: porphyrin-containing compound biosynthetic process	2.72E-06
44	GO:0009073: aromatic amino acid family biosynthetic process	2.73E-06
45	GO:0006733: oxidoreduction coenzyme metabolic process	3.31E-06
46	GO:0035304: regulation of protein dephosphorylation	3.66E-06
47	GO:0006636: unsaturated fatty acid biosynthetic process	1.10E-05
48	GO:0009117: nucleotide metabolic process	1.47E-05
49	GO:0045893: positive regulation of transcription, DNA-templated	2.48E-05
50	GO:0010103: stomatal complex morphogenesis	4.35E-05
51	GO:0016117: carotenoid biosynthetic process	4.40E-05
52	GO:0009773: photosynthetic electron transport in photosystem I	5.77E-05
53	GO:0009695: jasmonic acid biosynthetic process	7.50E-05
54	GO:0044272: sulfur compound biosynthetic process	1.02E-04
55	GO:0006399: tRNA metabolic process	2.35E-04
56	GO:0030154: cell differentiation	3.01E-04
57	GO:0000304: response to singlet oxygen	3.18E-04
58	GO:0009072: aromatic amino acid family metabolic process	3.49E-04
59	GO:0019344: cysteine biosynthetic process	3.70E-04
60	GO:0019761: glucosinolate biosynthetic process	4.31E-04
61	GO:0006782: protoporphyrinogen IX biosynthetic process	6.43E-04
62	GO:0019216: regulation of lipid metabolic process	6.43E-04
63	GO:0006354: DNA-templated transcription, elongation	6.63E-04
64	GO:0016556: mRNA modification	6.63E-04
65	GO:0048481: plant ovule development	7.49E-04
66	GO:0015979: photosynthesis	7.66E-04
67	GO:0006569: tryptophan catabolic process	1.09E-03
68	GO:0031408: oxylipin biosynthetic process	1.38E-03
69	GO:0008652: cellular amino acid biosynthetic process	1.49E-03
70	GO:0010228: vegetative to reproductive phase transition of meristem	1.65E-03
71	GO:0009735: response to cytokinin	1.71E-03
72	GO:0008361: regulation of cell size	1.98E-03
73	GO:0006434: seryl-tRNA aminoacylation	1.98E-03
74	GO:0016050: vesicle organization	1.98E-03
75	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.98E-03
76	GO:0006573: valine metabolic process	1.98E-03
77	GO:0006433: prolyl-tRNA aminoacylation	1.98E-03
78	GO:0032543: mitochondrial translation	1.98E-03
79	GO:0006423: cysteinyl-tRNA aminoacylation	1.98E-03
80	GO:0009069: serine family amino acid metabolic process	1.98E-03
81	GO:0019253: reductive pentose-phosphate cycle	1.98E-03
82	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.98E-03
83	GO:0019676: ammonia assimilation cycle	1.98E-03
84	GO:0006430: lysyl-tRNA aminoacylation	1.98E-03
85	GO:0009443: pyridoxal 5'-phosphate salvage	1.98E-03
86	GO:0006429: leucyl-tRNA aminoacylation	1.98E-03
87	GO:0043085: positive regulation of catalytic activity	1.99E-03
88	GO:0010206: photosystem II repair	2.27E-03
89	GO:0034660: ncRNA metabolic process	2.27E-03
90	GO:0009411: response to UV	2.27E-03
91	GO:0019684: photosynthesis, light reaction	2.40E-03
92	GO:0009793: embryo development ending in seed dormancy	2.60E-03
93	GO:0010114: response to red light	2.73E-03
94	GO:0010155: regulation of proton transport	2.83E-03
95	GO:0000023: maltose metabolic process	3.80E-03
96	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.98E-03
97	GO:0048653: anther development	4.52E-03
98	GO:0010380: regulation of chlorophyll biosynthetic process	4.52E-03
99	GO:0019464: glycine decarboxylation via glycine cleavage system	4.52E-03
100	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.52E-03
101	GO:0006432: phenylalanyl-tRNA aminoacylation	4.52E-03
102	GO:0010236: plastoquinone biosynthetic process	4.52E-03
103	GO:0010109: regulation of photosynthesis	4.52E-03
104	GO:0009684: indoleacetic acid biosynthetic process	5.02E-03
105	GO:0009407: toxin catabolic process	5.02E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	7.67E-03
107	GO:0010731: protein glutathionylation	7.67E-03
108	GO:0016075: rRNA catabolic process	7.67E-03
109	GO:0016024: CDP-diacylglycerol biosynthetic process	7.67E-03
110	GO:0043067: regulation of programmed cell death	7.67E-03
111	GO:0034599: cellular response to oxidative stress	7.67E-03
112	GO:0009965: leaf morphogenesis	9.23E-03
113	GO:0009767: photosynthetic electron transport chain	1.06E-02
114	GO:0009637: response to blue light	1.12E-02
115	GO:0071704: organic substance metabolic process	1.14E-02
116	GO:0006165: nucleoside diphosphate phosphorylation	1.14E-02
117	GO:0006228: UTP biosynthetic process	1.14E-02
118	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.14E-02
119	GO:0051205: protein insertion into membrane	1.14E-02
120	GO:0045037: protein import into chloroplast stroma	1.14E-02
121	GO:0006353: DNA-templated transcription, termination	1.14E-02
122	GO:0006183: GTP biosynthetic process	1.14E-02
123	GO:0006241: CTP biosynthetic process	1.14E-02
124	GO:0007389: pattern specification process	1.14E-02
125	GO:0015996: chlorophyll catabolic process	1.23E-02
126	GO:0006184: obsolete GTP catabolic process	1.37E-02
127	GO:0042545: cell wall modification	1.42E-02
128	GO:0070838: divalent metal ion transport	1.56E-02
129	GO:0006796: phosphate-containing compound metabolic process	1.56E-02
130	GO:0009088: threonine biosynthetic process	1.56E-02
131	GO:0060416: response to growth hormone	1.56E-02
132	GO:0009772: photosynthetic electron transport in photosystem II	1.56E-02
133	GO:0009813: flavonoid biosynthetic process	1.56E-02
134	GO:0007568: aging	1.56E-02
135	GO:0015994: chlorophyll metabolic process	1.56E-02
136	GO:0009308: amine metabolic process	1.56E-02
137	GO:0006631: fatty acid metabolic process	1.62E-02
138	GO:0010218: response to far red light	1.62E-02
139	GO:0048229: gametophyte development	2.03E-02
140	GO:0007005: mitochondrion organization	2.03E-02
141	GO:0006542: glutamine biosynthetic process	2.03E-02
142	GO:0000105: histidine biosynthetic process	2.03E-02
143	GO:0009913: epidermal cell differentiation	2.03E-02
144	GO:0009306: protein secretion	2.03E-02
145	GO:0019252: starch biosynthetic process	2.08E-02
146	GO:0042742: defense response to bacterium	2.10E-02
147	GO:0006414: translational elongation	2.23E-02
148	GO:0046777: protein autophosphorylation	2.32E-02
149	GO:0006801: superoxide metabolic process	2.54E-02
150	GO:0009926: auxin polar transport	2.54E-02
151	GO:0010205: photoinhibition	2.54E-02
152	GO:0030003: cellular cation homeostasis	2.54E-02
153	GO:0009704: de-etiolation	2.54E-02
154	GO:0010583: response to cyclopentenone	2.54E-02
155	GO:0033014: tetrapyrrole biosynthetic process	2.54E-02
156	GO:0043039: tRNA aminoacylation	3.09E-02
157	GO:0030245: cellulose catabolic process	3.09E-02
158	GO:0008295: spermidine biosynthetic process	3.09E-02
159	GO:0006200: obsolete ATP catabolic process	3.39E-02
160	GO:0040007: growth	3.68E-02
161	GO:0010015: root morphogenesis	3.68E-02
162	GO:0015977: carbon fixation	3.68E-02
163	GO:0009585: red, far-red light phototransduction	3.68E-02
164	GO:0000413: protein peptidyl-prolyl isomerization	3.79E-02
165	GO:0009832: plant-type cell wall biogenesis	4.31E-02
166	GO:0010466: negative regulation of peptidase activity	4.31E-02
167	GO:0006662: glycerol ether metabolic process	4.85E-02
168	GO:0008380: RNA splicing	4.97E-02
169	GO:0048527: lateral root development	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
5	GO:0004399: histidinol dehydrogenase activity	0.00E+00
6	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
7	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
8	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
9	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
10	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
11	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
12	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
13	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
14	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
15	GO:0005048: signal sequence binding	0.00E+00
16	GO:0005504: fatty acid binding	0.00E+00
17	GO:0003735: structural constituent of ribosome	3.29E-07
18	GO:0004812: aminoacyl-tRNA ligase activity	2.05E-06
19	GO:0004853: uroporphyrinogen decarboxylase activity	1.02E-04
20	GO:0004765: shikimate kinase activity	6.43E-04
21	GO:0016209: antioxidant activity	6.43E-04
22	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.98E-03
23	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.98E-03
24	GO:0004831: tyrosine-tRNA ligase activity	1.98E-03
25	GO:0070402: NADPH binding	1.98E-03
26	GO:0004817: cysteine-tRNA ligase activity	1.98E-03
27	GO:0004795: threonine synthase activity	1.98E-03
28	GO:0004824: lysine-tRNA ligase activity	1.98E-03
29	GO:0034256: chlorophyll(ide) b reductase activity	1.98E-03
30	GO:0004827: proline-tRNA ligase activity	1.98E-03
31	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.98E-03
32	GO:0004418: hydroxymethylbilane synthase activity	1.98E-03
33	GO:0004828: serine-tRNA ligase activity	1.98E-03
34	GO:0016851: magnesium chelatase activity	1.98E-03
35	GO:0004823: leucine-tRNA ligase activity	1.98E-03
36	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.98E-03
37	GO:0008312: 7S RNA binding	3.04E-03
38	GO:0051920: peroxiredoxin activity	4.52E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.52E-03
40	GO:0004826: phenylalanine-tRNA ligase activity	4.52E-03
41	GO:0004462: lactoylglutathione lyase activity	4.52E-03
42	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	4.52E-03
43	GO:0045485: omega-6 fatty acid desaturase activity	4.52E-03
44	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	4.52E-03
45	GO:0045430: chalcone isomerase activity	4.52E-03
46	GO:0004605: phosphatidate cytidylyltransferase activity	4.52E-03
47	GO:0000049: tRNA binding	5.02E-03
48	GO:0019843: rRNA binding	6.54E-03
49	GO:0033897: ribonuclease T2 activity	7.67E-03
50	GO:0000774: adenyl-nucleotide exchange factor activity	7.67E-03
51	GO:0016872: intramolecular lyase activity	7.67E-03
52	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.14E-02
53	GO:0070569: uridylyltransferase activity	1.14E-02
54	GO:0004659: prenyltransferase activity	1.14E-02
55	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.14E-02
56	GO:0016984: ribulose-bisphosphate carboxylase activity	1.14E-02
57	GO:0004550: nucleoside diphosphate kinase activity	1.14E-02
58	GO:0003913: DNA photolyase activity	1.14E-02
59	GO:0015035: protein disulfide oxidoreductase activity	1.33E-02
60	GO:0016831: carboxy-lyase activity	1.42E-02
61	GO:0003746: translation elongation factor activity	1.48E-02
62	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.56E-02
63	GO:0016868: intramolecular transferase activity, phosphotransferases	1.56E-02
64	GO:0016987: sigma factor activity	1.56E-02
65	GO:0003723: RNA binding	1.92E-02
66	GO:0004356: glutamate-ammonia ligase activity	2.03E-02
67	GO:0008810: cellulase activity	2.54E-02
68	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.54E-02
69	GO:0004525: ribonuclease III activity	2.54E-02
70	GO:0004784: superoxide dismutase activity	3.09E-02
71	GO:0043022: ribosome binding	3.09E-02
72	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.09E-02
73	GO:0051087: chaperone binding	3.09E-02
74	GO:0009055: electron carrier activity	3.32E-02
75	GO:0004427: inorganic diphosphatase activity	3.68E-02
76	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.31E-02
77	GO:0030414: peptidase inhibitor activity	4.31E-02
78	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.31E-02
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.85E-56
2	GO:0009570: chloroplast stroma	1.29E-42
3	GO:0009941: chloroplast envelope	1.29E-26
4	GO:0009535: chloroplast thylakoid membrane	9.45E-16
5	GO:0009579: thylakoid	1.97E-13
6	GO:0005840: ribosome	3.59E-10
7	GO:0009534: chloroplast thylakoid	3.27E-07
8	GO:0009543: chloroplast thylakoid lumen	7.22E-06
9	GO:0030529: intracellular ribonucleoprotein complex	2.67E-05
10	GO:0009295: nucleoid	6.64E-05
11	GO:0031977: thylakoid lumen	5.73E-04
12	GO:0009840: chloroplastic endopeptidase Clp complex	1.09E-03
13	GO:0042651: thylakoid membrane	1.38E-03
14	GO:0009536: plastid	1.60E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.63E-03
16	GO:0005960: glycine cleavage complex	1.98E-03
17	GO:0044445: cytosolic part	1.98E-03
18	GO:0080085: signal recognition particle, chloroplast targeting	1.98E-03
19	GO:0009528: plastid inner membrane	1.98E-03
20	GO:0000311: plastid large ribosomal subunit	1.98E-03
21	GO:0009527: plastid outer membrane	1.98E-03
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.98E-03
23	GO:0048500: signal recognition particle	2.27E-03
24	GO:0009532: plastid stroma	3.04E-03
25	GO:0005622: intracellular	6.75E-03
26	GO:0055028: cortical microtubule	7.67E-03
27	GO:0009538: photosystem I reaction center	1.14E-02
28	GO:0010319: stromule	1.36E-02
29	GO:0015934: large ribosomal subunit	1.36E-02
30	GO:0009508: plastid chromosome	1.56E-02
31	GO:0031225: anchored component of membrane	2.03E-02
32	GO:0019013: viral nucleocapsid	2.32E-02
33	GO:0009522: photosystem I	2.32E-02
34	GO:0010287: plastoglobule	2.77E-02
35	GO:0009523: photosystem II	4.49E-02