co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G840946

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0032543: mitochondrial translation	0.00E+00
5	GO:0046506: sulfolipid biosynthetic process	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:1901259: chloroplast rRNA processing	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:0090342: regulation of cell aging	0.00E+00
10	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
11	GO:0042780: tRNA 3'-end processing	0.00E+00
12	GO:1900865: chloroplast RNA modification	0.00E+00
13	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
14	GO:0043043: peptide biosynthetic process	0.00E+00
15	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
16	GO:0042407: cristae formation	0.00E+00
17	GO:0090391: granum assembly	0.00E+00
18	GO:0010027: thylakoid membrane organization	1.34E-16
19	GO:0009658: chloroplast organization	7.98E-16
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.43E-15
21	GO:0016226: iron-sulfur cluster assembly	7.79E-12
22	GO:0045036: protein targeting to chloroplast	8.97E-12
23	GO:0042793: transcription from plastid promoter	2.19E-11
24	GO:0009902: chloroplast relocation	3.53E-10
25	GO:0006364: rRNA processing	4.82E-10
26	GO:0009073: aromatic amino acid family biosynthetic process	3.09E-08
27	GO:0045038: protein import into chloroplast thylakoid membrane	3.34E-08
28	GO:0045893: positive regulation of transcription, DNA-templated	3.62E-08
29	GO:0006399: tRNA metabolic process	5.06E-08
30	GO:0006655: phosphatidylglycerol biosynthetic process	6.73E-08
31	GO:0010207: photosystem II assembly	2.64E-07
32	GO:0019344: cysteine biosynthetic process	1.35E-05
33	GO:0035304: regulation of protein dephosphorylation	2.08E-05
34	GO:0006779: porphyrin-containing compound biosynthetic process	2.83E-05
35	GO:0048481: plant ovule development	3.73E-05
36	GO:0006418: tRNA aminoacylation for protein translation	4.47E-05
37	GO:1901671: positive regulation of superoxide dismutase activity	6.14E-05
38	GO:0032544: plastid translation	6.14E-05
39	GO:0042372: phylloquinone biosynthetic process	6.14E-05
40	GO:0015995: chlorophyll biosynthetic process	9.89E-05
41	GO:0030154: cell differentiation	1.39E-04
42	GO:0009247: glycolipid biosynthetic process	1.98E-04
43	GO:0006098: pentose-phosphate shunt	1.98E-04
44	GO:0006733: oxidoreduction coenzyme metabolic process	1.98E-04
45	GO:0010103: stomatal complex morphogenesis	2.22E-04
46	GO:0006412: translation	2.69E-04
47	GO:0016556: mRNA modification	3.68E-04
48	GO:0009117: nucleotide metabolic process	4.09E-04
49	GO:0006353: DNA-templated transcription, termination	4.09E-04
50	GO:0019375: galactolipid biosynthetic process	4.09E-04
51	GO:0006546: glycine catabolic process	4.84E-04
52	GO:0006457: protein folding	6.78E-04
53	GO:0019748: secondary metabolic process	6.93E-04
54	GO:0009308: amine metabolic process	6.93E-04
55	GO:0006569: tryptophan catabolic process	6.93E-04
56	GO:0006200: obsolete ATP catabolic process	9.07E-04
57	GO:0009306: protein secretion	1.06E-03
58	GO:0006434: seryl-tRNA aminoacylation	1.48E-03
59	GO:0006788: heme oxidation	1.48E-03
60	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.48E-03
61	GO:0006433: prolyl-tRNA aminoacylation	1.48E-03
62	GO:0006423: cysteinyl-tRNA aminoacylation	1.48E-03
63	GO:0009069: serine family amino acid metabolic process	1.48E-03
64	GO:0071722: detoxification of arsenic-containing substance	1.48E-03
65	GO:0008361: regulation of cell size	1.48E-03
66	GO:0034660: ncRNA metabolic process	1.50E-03
67	GO:0009106: lipoate metabolic process	1.50E-03
68	GO:0006766: vitamin metabolic process	1.50E-03
69	GO:0009108: coenzyme biosynthetic process	1.50E-03
70	GO:0006184: obsolete GTP catabolic process	1.71E-03
71	GO:0009773: photosynthetic electron transport in photosystem I	2.22E-03
72	GO:0009695: jasmonic acid biosynthetic process	2.55E-03
73	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.57E-03
74	GO:0009793: embryo development ending in seed dormancy	2.98E-03
75	GO:0009684: indoleacetic acid biosynthetic process	3.24E-03
76	GO:0009407: toxin catabolic process	3.24E-03
77	GO:0048653: anther development	3.33E-03
78	GO:0010380: regulation of chlorophyll biosynthetic process	3.33E-03
79	GO:0019464: glycine decarboxylation via glycine cleavage system	3.33E-03
80	GO:0006432: phenylalanyl-tRNA aminoacylation	3.33E-03
81	GO:0019481: L-alanine catabolic process, by transamination	3.33E-03
82	GO:0010109: regulation of photosynthesis	3.33E-03
83	GO:0010236: plastoquinone biosynthetic process	3.33E-03
84	GO:0010024: phytochromobilin biosynthetic process	3.33E-03
85	GO:0010228: vegetative to reproductive phase transition of meristem	3.73E-03
86	GO:0006354: DNA-templated transcription, elongation	4.02E-03
87	GO:0009965: leaf morphogenesis	4.77E-03
88	GO:0010731: protein glutathionylation	5.66E-03
89	GO:0016075: rRNA catabolic process	5.66E-03
90	GO:0006431: methionyl-tRNA aminoacylation	5.66E-03
91	GO:0043067: regulation of programmed cell death	5.66E-03
92	GO:0009231: riboflavin biosynthetic process	5.66E-03
93	GO:0000304: response to singlet oxygen	5.66E-03
94	GO:0006450: regulation of translational fidelity	5.66E-03
95	GO:0051607: defense response to virus	6.85E-03
96	GO:0006636: unsaturated fatty acid biosynthetic process	7.98E-03
97	GO:0006165: nucleoside diphosphate phosphorylation	8.39E-03
98	GO:0006228: UTP biosynthetic process	8.39E-03
99	GO:0051205: protein insertion into membrane	8.39E-03
100	GO:0045037: protein import into chloroplast stroma	8.39E-03
101	GO:0006183: GTP biosynthetic process	8.39E-03
102	GO:0006241: CTP biosynthetic process	8.39E-03
103	GO:0007389: pattern specification process	8.39E-03
104	GO:0030259: lipid glycosylation	8.39E-03
105	GO:0006782: protoporphyrinogen IX biosynthetic process	8.39E-03
106	GO:0042545: cell wall modification	9.21E-03
107	GO:0009657: plastid organization	1.05E-02
108	GO:0009772: photosynthetic electron transport in photosystem II	1.15E-02
109	GO:0010468: regulation of gene expression	1.15E-02
110	GO:0000096: sulfur amino acid metabolic process	1.15E-02
111	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.19E-02
112	GO:0010267: production of ta-siRNAs involved in RNA interference	1.19E-02
113	GO:0006414: translational elongation	1.29E-02
114	GO:0006749: glutathione metabolic process	1.49E-02
115	GO:0031347: regulation of defense response	1.49E-02
116	GO:0007005: mitochondrion organization	1.49E-02
117	GO:0009926: auxin polar transport	1.87E-02
118	GO:0019538: protein metabolic process	1.87E-02
119	GO:0032880: regulation of protein localization	1.87E-02
120	GO:0009411: response to UV	1.87E-02
121	GO:0010583: response to cyclopentenone	1.87E-02
122	GO:0033014: tetrapyrrole biosynthetic process	1.87E-02
123	GO:0006189: 'de novo' IMP biosynthetic process	1.87E-02
124	GO:0010206: photosystem II repair	1.87E-02
125	GO:0009409: response to cold	2.27E-02
126	GO:0051604: protein maturation	2.27E-02
127	GO:0043039: tRNA aminoacylation	2.27E-02
128	GO:0001666: response to hypoxia	2.70E-02
129	GO:0009585: red, far-red light phototransduction	2.70E-02
130	GO:0040007: growth	2.70E-02
131	GO:0010015: root morphogenesis	2.70E-02
132	GO:0045087: innate immune response	2.70E-02
133	GO:0045454: cell redox homeostasis	2.74E-02
134	GO:0009735: response to cytokinin	2.92E-02
135	GO:0006662: glycerol ether metabolic process	3.16E-02
136	GO:0000302: response to reactive oxygen species	3.17E-02
137	GO:0009832: plant-type cell wall biogenesis	3.17E-02
138	GO:0019761: glucosinolate biosynthetic process	3.67E-02
139	GO:0000023: maltose metabolic process	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
8	GO:0003919: FMN adenylyltransferase activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
11	GO:0046408: chlorophyll synthetase activity	0.00E+00
12	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
13	GO:0004812: aminoacyl-tRNA ligase activity	6.25E-05
14	GO:0000774: adenyl-nucleotide exchange factor activity	1.98E-04
15	GO:0004659: prenyltransferase activity	4.09E-04
16	GO:0004765: shikimate kinase activity	4.09E-04
17	GO:0016209: antioxidant activity	4.09E-04
18	GO:0004252: serine-type endopeptidase activity	5.42E-04
19	GO:0003735: structural constituent of ribosome	7.25E-04
20	GO:0008194: UDP-glycosyltransferase activity	1.48E-03
21	GO:0008146: sulfotransferase activity	1.48E-03
22	GO:0004817: cysteine-tRNA ligase activity	1.48E-03
23	GO:0004827: proline-tRNA ligase activity	1.48E-03
24	GO:0004418: hydroxymethylbilane synthase activity	1.48E-03
25	GO:0016851: magnesium chelatase activity	1.48E-03
26	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.48E-03
27	GO:0004828: serine-tRNA ligase activity	1.48E-03
28	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.48E-03
29	GO:0004831: tyrosine-tRNA ligase activity	1.48E-03
30	GO:0035250: UDP-galactosyltransferase activity	1.48E-03
31	GO:0004362: glutathione-disulfide reductase activity	1.48E-03
32	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.48E-03
33	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.50E-03
34	GO:0008312: 7S RNA binding	2.00E-03
35	GO:0051087: chaperone binding	2.00E-03
36	GO:0016887: ATPase activity	2.28E-03
37	GO:0031072: heat shock protein binding	2.55E-03
38	GO:0000049: tRNA binding	3.24E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.33E-03
40	GO:0047134: protein-disulfide reductase activity	3.33E-03
41	GO:0004826: phenylalanine-tRNA ligase activity	3.33E-03
42	GO:0004853: uroporphyrinogen decarboxylase activity	3.33E-03
43	GO:0004392: heme oxygenase (decyclizing) activity	3.33E-03
44	GO:0051920: peroxiredoxin activity	3.33E-03
45	GO:0046914: transition metal ion binding	4.02E-03
46	GO:0051082: unfolded protein binding	5.42E-03
47	GO:0004825: methionine-tRNA ligase activity	5.66E-03
48	GO:0048038: quinone binding	7.98E-03
49	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	8.39E-03
50	GO:0070569: uridylyltransferase activity	8.39E-03
51	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	8.39E-03
52	GO:0004550: nucleoside diphosphate kinase activity	8.39E-03
53	GO:0003913: DNA photolyase activity	8.39E-03
54	GO:0003746: translation elongation factor activity	8.57E-03
55	GO:0016987: sigma factor activity	1.15E-02
56	GO:0005525: GTP binding	1.18E-02
57	GO:0003723: RNA binding	1.31E-02
58	GO:0005507: copper ion binding	1.43E-02
59	GO:0008173: RNA methyltransferase activity	1.49E-02
60	GO:0008565: protein transporter activity	1.68E-02
61	GO:0003924: GTPase activity	1.71E-02
62	GO:0004525: ribonuclease III activity	1.87E-02
63	GO:0019843: rRNA binding	2.25E-02
64	GO:0043022: ribosome binding	2.27E-02
65	GO:0008266: poly(U) RNA binding	2.70E-02
66	GO:0015035: protein disulfide oxidoreductase activity	2.83E-02
67	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.17E-02
68	GO:0008236: serine-type peptidase activity	3.41E-02
69	GO:0005524: ATP binding	3.86E-02
70	GO:0003690: double-stranded DNA binding	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009507: chloroplast	9.90E-46
5	GO:0009570: chloroplast stroma	1.33E-32
6	GO:0009941: chloroplast envelope	2.95E-22
7	GO:0009535: chloroplast thylakoid membrane	3.57E-11
8	GO:0009579: thylakoid	2.25E-07
9	GO:0005840: ribosome	9.61E-06
10	GO:0009840: chloroplastic endopeptidase Clp complex	1.95E-05
11	GO:0009534: chloroplast thylakoid	9.89E-05
12	GO:0009532: plastid stroma	1.24E-04
13	GO:0009295: nucleoid	4.84E-04
14	GO:0030529: intracellular ribonucleoprotein complex	5.13E-04
15	GO:0000311: plastid large ribosomal subunit	1.48E-03
16	GO:0009526: plastid envelope	1.48E-03
17	GO:0005960: glycine cleavage complex	1.48E-03
18	GO:0048500: signal recognition particle	1.50E-03
19	GO:0009533: chloroplast stromal thylakoid	3.33E-03
20	GO:0009536: plastid	4.12E-03
21	GO:0005759: mitochondrial matrix	4.23E-03
22	GO:0031225: anchored component of membrane	1.49E-02
23	GO:0019013: viral nucleocapsid	1.51E-02
24	GO:0005739: mitochondrion	1.59E-02
25	GO:0009706: chloroplast inner membrane	2.05E-02
26	GO:0048046: apoplast	3.01E-02
27	GO:0005622: intracellular	3.59E-02
28	GO:0015934: large ribosomal subunit	3.95E-02
29	GO:0010319: stromule	3.95E-02