co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G839422

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046506: sulfolipid biosynthetic process	0.00E+00
2	GO:1901259: chloroplast rRNA processing	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0032544: plastid translation	0.00E+00
5	GO:1900865: chloroplast RNA modification	0.00E+00
6	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
7	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
8	GO:0043043: peptide biosynthetic process	0.00E+00
9	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
10	GO:0042821: pyridoxal biosynthetic process	0.00E+00
11	GO:0042407: cristae formation	0.00E+00
12	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
13	GO:0043953: protein transport by the Tat complex	0.00E+00
14	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
15	GO:0010027: thylakoid membrane organization	1.86E-26
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.25E-22
17	GO:0006364: rRNA processing	3.31E-15
18	GO:0009902: chloroplast relocation	1.53E-14
19	GO:0045036: protein targeting to chloroplast	2.08E-13
20	GO:0010207: photosystem II assembly	4.33E-13
21	GO:0042793: transcription from plastid promoter	6.07E-13
22	GO:0016226: iron-sulfur cluster assembly	7.23E-13
23	GO:0009658: chloroplast organization	6.95E-11
24	GO:0006655: phosphatidylglycerol biosynthetic process	2.71E-09
25	GO:0015995: chlorophyll biosynthetic process	7.24E-09
26	GO:0006098: pentose-phosphate shunt	7.95E-08
27	GO:0045893: positive regulation of transcription, DNA-templated	8.62E-08
28	GO:0006636: unsaturated fatty acid biosynthetic process	2.06E-07
29	GO:0006412: translation	7.74E-07
30	GO:0009073: aromatic amino acid family biosynthetic process	1.21E-06
31	GO:0006546: glycine catabolic process	1.45E-06
32	GO:0035304: regulation of protein dephosphorylation	1.79E-06
33	GO:0006766: vitamin metabolic process	2.40E-06
34	GO:0009108: coenzyme biosynthetic process	2.40E-06
35	GO:0009106: lipoate metabolic process	2.40E-06
36	GO:0006399: tRNA metabolic process	5.10E-06
37	GO:0045038: protein import into chloroplast thylakoid membrane	9.78E-06
38	GO:0016117: carotenoid biosynthetic process	2.26E-05
39	GO:0019748: secondary metabolic process	2.66E-05
40	GO:0000096: sulfur amino acid metabolic process	2.66E-05
41	GO:0006569: tryptophan catabolic process	2.66E-05
42	GO:0009773: photosynthetic electron transport in photosystem I	3.26E-05
43	GO:0009306: protein secretion	5.61E-05
44	GO:0006418: tRNA aminoacylation for protein translation	7.30E-05
45	GO:0042372: phylloquinone biosynthetic process	7.67E-05
46	GO:0034660: ncRNA metabolic process	1.01E-04
47	GO:0030154: cell differentiation	1.96E-04
48	GO:0006733: oxidoreduction coenzyme metabolic process	2.44E-04
49	GO:0019761: glucosinolate biosynthetic process	2.64E-04
50	GO:0010103: stomatal complex morphogenesis	3.09E-04
51	GO:0009684: indoleacetic acid biosynthetic process	3.50E-04
52	GO:0009695: jasmonic acid biosynthetic process	4.56E-04
53	GO:0048481: plant ovule development	4.68E-04
54	GO:0016556: mRNA modification	4.75E-04
55	GO:0009117: nucleotide metabolic process	4.99E-04
56	GO:0006779: porphyrin-containing compound biosynthetic process	6.25E-04
57	GO:0009308: amine metabolic process	8.42E-04
58	GO:0010228: vegetative to reproductive phase transition of meristem	1.05E-03
59	GO:0009793: embryo development ending in seed dormancy	1.45E-03
60	GO:0019344: cysteine biosynthetic process	1.51E-03
61	GO:0006433: prolyl-tRNA aminoacylation	1.68E-03
62	GO:0032543: mitochondrial translation	1.68E-03
63	GO:0006423: cysteinyl-tRNA aminoacylation	1.68E-03
64	GO:0009069: serine family amino acid metabolic process	1.68E-03
65	GO:0071722: detoxification of arsenic-containing substance	1.68E-03
66	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.68E-03
67	GO:0009443: pyridoxal 5'-phosphate salvage	1.68E-03
68	GO:0008361: regulation of cell size	1.68E-03
69	GO:0006434: seryl-tRNA aminoacylation	1.68E-03
70	GO:0016050: vesicle organization	1.68E-03
71	GO:0019684: photosynthesis, light reaction	1.78E-03
72	GO:0006184: obsolete GTP catabolic process	2.47E-03
73	GO:0000023: maltose metabolic process	2.59E-03
74	GO:0009072: aromatic amino acid family metabolic process	3.09E-03
75	GO:1901671: positive regulation of superoxide dismutase activity	3.81E-03
76	GO:0019464: glycine decarboxylation via glycine cleavage system	3.81E-03
77	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.81E-03
78	GO:0006432: phenylalanyl-tRNA aminoacylation	3.81E-03
79	GO:0051555: flavonol biosynthetic process	3.81E-03
80	GO:0010109: regulation of photosynthesis	3.81E-03
81	GO:0010236: plastoquinone biosynthetic process	3.81E-03
82	GO:0010253: UDP-rhamnose biosynthetic process	3.81E-03
83	GO:0010192: mucilage biosynthetic process	3.81E-03
84	GO:0009688: abscisic acid biosynthetic process	3.81E-03
85	GO:0048653: anther development	3.81E-03
86	GO:0009225: nucleotide-sugar metabolic process	3.81E-03
87	GO:0044272: sulfur compound biosynthetic process	3.81E-03
88	GO:0006354: DNA-templated transcription, elongation	4.85E-03
89	GO:0043085: positive regulation of catalytic activity	5.87E-03
90	GO:0006200: obsolete ATP catabolic process	5.87E-03
91	GO:0009965: leaf morphogenesis	6.35E-03
92	GO:0043067: regulation of programmed cell death	6.46E-03
93	GO:0009231: riboflavin biosynthetic process	6.46E-03
94	GO:0009247: glycolipid biosynthetic process	6.46E-03
95	GO:0007186: G-protein coupled receptor signaling pathway	6.46E-03
96	GO:0010038: response to metal ion	6.46E-03
97	GO:0010731: protein glutathionylation	6.46E-03
98	GO:0045226: extracellular polysaccharide biosynthetic process	6.46E-03
99	GO:0016075: rRNA catabolic process	6.46E-03
100	GO:0009735: response to cytokinin	6.71E-03
101	GO:0051607: defense response to virus	8.27E-03
102	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.58E-03
103	GO:0045037: protein import into chloroplast stroma	9.58E-03
104	GO:0006353: DNA-templated transcription, termination	9.58E-03
105	GO:0019375: galactolipid biosynthetic process	9.58E-03
106	GO:0006183: GTP biosynthetic process	9.58E-03
107	GO:0006241: CTP biosynthetic process	9.58E-03
108	GO:0010214: seed coat development	9.58E-03
109	GO:0007389: pattern specification process	9.58E-03
110	GO:0071704: organic substance metabolic process	9.58E-03
111	GO:0006782: protoporphyrinogen IX biosynthetic process	9.58E-03
112	GO:0006165: nucleoside diphosphate phosphorylation	9.58E-03
113	GO:0019216: regulation of lipid metabolic process	9.58E-03
114	GO:0006228: UTP biosynthetic process	9.58E-03
115	GO:0006457: protein folding	9.97E-03
116	GO:0042545: cell wall modification	1.11E-02
117	GO:0006631: fatty acid metabolic process	1.27E-02
118	GO:0009813: flavonoid biosynthetic process	1.31E-02
119	GO:0015994: chlorophyll metabolic process	1.31E-02
120	GO:0010315: auxin efflux	1.31E-02
121	GO:0060416: response to growth hormone	1.31E-02
122	GO:0009772: photosynthetic electron transport in photosystem II	1.31E-02
123	GO:0010267: production of ta-siRNAs involved in RNA interference	1.44E-02
124	GO:0019252: starch biosynthetic process	1.44E-02
125	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.44E-02
126	GO:0006414: translational elongation	1.64E-02
127	GO:0009913: epidermal cell differentiation	1.70E-02
128	GO:0048229: gametophyte development	1.70E-02
129	GO:0007005: mitochondrion organization	1.70E-02
130	GO:0046777: protein autophosphorylation	1.82E-02
131	GO:0008652: cellular amino acid biosynthetic process	2.04E-02
132	GO:0030003: cellular cation homeostasis	2.13E-02
133	GO:0009704: de-etiolation	2.13E-02
134	GO:0009411: response to UV	2.13E-02
135	GO:0009814: defense response, incompatible interaction	2.13E-02
136	GO:0010583: response to cyclopentenone	2.13E-02
137	GO:0009926: auxin polar transport	2.13E-02
138	GO:0051604: protein maturation	2.60E-02
139	GO:0015693: magnesium ion transport	2.60E-02
140	GO:0043039: tRNA aminoacylation	2.60E-02
141	GO:0030245: cellulose catabolic process	2.60E-02
142	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.09E-02
143	GO:0040007: growth	3.09E-02
144	GO:0010015: root morphogenesis	3.09E-02
145	GO:0045087: innate immune response	3.09E-02
146	GO:0009585: red, far-red light phototransduction	3.09E-02
147	GO:0042742: defense response to bacterium	3.31E-02
148	GO:0009409: response to cold	3.34E-02
149	GO:0009832: plant-type cell wall biogenesis	3.62E-02
150	GO:0009407: toxin catabolic process	3.62E-02
151	GO:0048527: lateral root development	4.18E-02
152	GO:0009697: salicylic acid biosynthetic process	4.18E-02
153	GO:0009567: double fertilization forming a zygote and endosperm	4.18E-02
154	GO:0009790: embryo development	4.43E-02
155	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.76E-02
156	GO:0006974: cellular response to DNA damage stimulus	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
2	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
7	GO:0003919: FMN adenylyltransferase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0005504: fatty acid binding	0.00E+00
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
11	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
12	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
13	GO:0003735: structural constituent of ribosome	9.27E-06
14	GO:0004812: aminoacyl-tRNA ligase activity	1.01E-04
15	GO:0004765: shikimate kinase activity	4.99E-04
16	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.68E-03
17	GO:0034256: chlorophyll(ide) b reductase activity	1.68E-03
18	GO:0004827: proline-tRNA ligase activity	1.68E-03
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.68E-03
20	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.68E-03
21	GO:0004828: serine-tRNA ligase activity	1.68E-03
22	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.68E-03
23	GO:0004831: tyrosine-tRNA ligase activity	1.68E-03
24	GO:0010280: UDP-L-rhamnose synthase activity	1.68E-03
25	GO:0070402: NADPH binding	1.68E-03
26	GO:0008146: sulfotransferase activity	1.68E-03
27	GO:0004817: cysteine-tRNA ligase activity	1.68E-03
28	GO:0008565: protein transporter activity	3.24E-03
29	GO:0004853: uroporphyrinogen decarboxylase activity	3.81E-03
30	GO:0045430: chalcone isomerase activity	3.81E-03
31	GO:0004826: phenylalanine-tRNA ligase activity	3.81E-03
32	GO:0000049: tRNA binding	3.93E-03
33	GO:0008460: dTDP-glucose 4,6-dehydratase activity	6.46E-03
34	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	6.46E-03
35	GO:0000774: adenyl-nucleotide exchange factor activity	6.46E-03
36	GO:0016872: intramolecular lyase activity	6.46E-03
37	GO:0051082: unfolded protein binding	7.55E-03
38	GO:0008236: serine-type peptidase activity	8.22E-03
39	GO:0004550: nucleoside diphosphate kinase activity	9.58E-03
40	GO:0016209: antioxidant activity	9.58E-03
41	GO:0003913: DNA photolyase activity	9.58E-03
42	GO:0070569: uridylyltransferase activity	9.58E-03
43	GO:0004659: prenyltransferase activity	9.58E-03
44	GO:0048038: quinone binding	9.64E-03
45	GO:0003746: translation elongation factor activity	1.09E-02
46	GO:0016887: ATPase activity	1.27E-02
47	GO:0016868: intramolecular transferase activity, phosphotransferases	1.31E-02
48	GO:0016987: sigma factor activity	1.31E-02
49	GO:0004252: serine-type endopeptidase activity	1.35E-02
50	GO:0008173: RNA methyltransferase activity	1.70E-02
51	GO:0005525: GTP binding	1.81E-02
52	GO:0031072: heat shock protein binding	2.03E-02
53	GO:0004525: ribonuclease III activity	2.13E-02
54	GO:0008810: cellulase activity	2.13E-02
55	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.13E-02
56	GO:0003723: RNA binding	2.14E-02
57	GO:0003924: GTPase activity	2.44E-02
58	GO:0008312: 7S RNA binding	2.60E-02
59	GO:0043022: ribosome binding	2.60E-02
60	GO:0051087: chaperone binding	2.60E-02
61	GO:0008266: poly(U) RNA binding	3.09E-02
62	GO:0015035: protein disulfide oxidoreductase activity	3.58E-02
63	GO:0015095: magnesium ion transmembrane transporter activity	3.62E-02
64	GO:0046873: metal ion transmembrane transporter activity	3.62E-02
65	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.62E-02
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.62E-02
67	GO:0046914: transition metal ion binding	4.18E-02
68	GO:0000287: magnesium ion binding	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0031361: integral component of thylakoid membrane	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	3.13E-47
5	GO:0009570: chloroplast stroma	2.76E-36
6	GO:0009941: chloroplast envelope	8.96E-22
7	GO:0009535: chloroplast thylakoid membrane	3.22E-12
8	GO:0009579: thylakoid	1.66E-09
9	GO:0009534: chloroplast thylakoid	7.24E-09
10	GO:0005840: ribosome	4.85E-08
11	GO:0009840: chloroplastic endopeptidase Clp complex	2.66E-05
12	GO:0009295: nucleoid	4.12E-05
13	GO:0009543: chloroplast thylakoid lumen	8.42E-05
14	GO:0030529: intracellular ribonucleoprotein complex	1.05E-04
15	GO:0009532: plastid stroma	1.64E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.28E-03
17	GO:0009528: plastid inner membrane	1.68E-03
18	GO:0000311: plastid large ribosomal subunit	1.68E-03
19	GO:0009527: plastid outer membrane	1.68E-03
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.68E-03
21	GO:0009526: plastid envelope	1.68E-03
22	GO:0005960: glycine cleavage complex	1.68E-03
23	GO:0044445: cytosolic part	1.68E-03
24	GO:0080085: signal recognition particle, chloroplast targeting	1.68E-03
25	GO:0055028: cortical microtubule	6.46E-03
26	GO:0005622: intracellular	7.35E-03
27	GO:0031977: thylakoid lumen	1.09E-02
28	GO:0009508: plastid chromosome	1.31E-02
29	GO:0031225: anchored component of membrane	1.70E-02
30	GO:0019013: viral nucleocapsid	1.82E-02
31	GO:0048500: signal recognition particle	2.13E-02
32	GO:0009706: chloroplast inner membrane	2.48E-02
33	GO:0005759: mitochondrial matrix	2.97E-02
34	GO:0009536: plastid	4.38E-02
35	GO:0010319: stromule	4.75E-02
36	GO:0015934: large ribosomal subunit	4.75E-02