co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G828581

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
5	GO:0032543: mitochondrial translation	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0043043: peptide biosynthetic process	0.00E+00
9	GO:0042407: cristae formation	0.00E+00
10	GO:0090391: granum assembly	0.00E+00
11	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.95E-16
12	GO:0009658: chloroplast organization	2.20E-13
13	GO:0010027: thylakoid membrane organization	6.54E-12
14	GO:0009902: chloroplast relocation	1.19E-10
15	GO:0042793: transcription from plastid promoter	5.80E-10
16	GO:0006655: phosphatidylglycerol biosynthetic process	3.17E-08
17	GO:0010207: photosystem II assembly	9.37E-08
18	GO:0006364: rRNA processing	1.69E-07
19	GO:0035304: regulation of protein dephosphorylation	4.88E-07
20	GO:0045036: protein targeting to chloroplast	8.00E-07
21	GO:0045038: protein import into chloroplast thylakoid membrane	4.69E-06
22	GO:0016226: iron-sulfur cluster assembly	1.29E-05
23	GO:0006457: protein folding	1.38E-05
24	GO:0006779: porphyrin-containing compound biosynthetic process	1.71E-05
25	GO:0006412: translation	2.14E-05
26	GO:0006418: tRNA aminoacylation for protein translation	2.30E-05
27	GO:0045893: positive regulation of transcription, DNA-templated	2.38E-05
28	GO:1901671: positive regulation of superoxide dismutase activity	4.57E-05
29	GO:0032544: plastid translation	4.57E-05
30	GO:0015995: chlorophyll biosynthetic process	5.27E-05
31	GO:0019344: cysteine biosynthetic process	8.84E-05
32	GO:0006098: pentose-phosphate shunt	1.01E-04
33	GO:0006733: oxidoreduction coenzyme metabolic process	1.50E-04
34	GO:0009117: nucleotide metabolic process	3.16E-04
35	GO:0045037: protein import into chloroplast stroma	3.16E-04
36	GO:0006353: DNA-templated transcription, termination	3.16E-04
37	GO:0006546: glycine catabolic process	3.46E-04
38	GO:0019748: secondary metabolic process	5.38E-04
39	GO:0009073: aromatic amino acid family biosynthetic process	6.61E-04
40	GO:0034660: ncRNA metabolic process	1.17E-03
41	GO:0009106: lipoate metabolic process	1.17E-03
42	GO:0006766: vitamin metabolic process	1.17E-03
43	GO:0009108: coenzyme biosynthetic process	1.17E-03
44	GO:0033014: tetrapyrrole biosynthetic process	1.17E-03
45	GO:0006788: heme oxidation	1.25E-03
46	GO:0006433: prolyl-tRNA aminoacylation	1.25E-03
47	GO:0006423: cysteinyl-tRNA aminoacylation	1.25E-03
48	GO:0071722: detoxification of arsenic-containing substance	1.25E-03
49	GO:0006430: lysyl-tRNA aminoacylation	1.25E-03
50	GO:0006429: leucyl-tRNA aminoacylation	1.25E-03
51	GO:0008361: regulation of cell size	1.25E-03
52	GO:0048481: plant ovule development	1.34E-03
53	GO:0010103: stomatal complex morphogenesis	1.41E-03
54	GO:0006399: tRNA metabolic process	1.58E-03
55	GO:0009773: photosynthetic electron transport in photosystem I	1.64E-03
56	GO:0009695: jasmonic acid biosynthetic process	1.88E-03
57	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.03E-03
58	GO:0044272: sulfur compound biosynthetic process	2.81E-03
59	GO:0019464: glycine decarboxylation via glycine cleavage system	2.81E-03
60	GO:0006432: phenylalanyl-tRNA aminoacylation	2.81E-03
61	GO:0010109: regulation of photosynthesis	2.81E-03
62	GO:0010236: plastoquinone biosynthetic process	2.81E-03
63	GO:0042372: phylloquinone biosynthetic process	2.81E-03
64	GO:0010024: phytochromobilin biosynthetic process	2.81E-03
65	GO:0048653: anther development	2.81E-03
66	GO:0010380: regulation of chlorophyll biosynthetic process	2.81E-03
67	GO:0006354: DNA-templated transcription, elongation	3.12E-03
68	GO:0016556: mRNA modification	3.12E-03
69	GO:0043067: regulation of programmed cell death	4.78E-03
70	GO:0030497: fatty acid elongation	4.78E-03
71	GO:0009247: glycolipid biosynthetic process	4.78E-03
72	GO:0000304: response to singlet oxygen	4.78E-03
73	GO:0006450: regulation of translational fidelity	4.78E-03
74	GO:0051085: chaperone mediated protein folding requiring cofactor	4.78E-03
75	GO:0009409: response to cold	4.91E-03
76	GO:0031408: oxylipin biosynthetic process	5.35E-03
77	GO:0051607: defense response to virus	5.35E-03
78	GO:0009793: embryo development ending in seed dormancy	5.87E-03
79	GO:0006165: nucleoside diphosphate phosphorylation	7.07E-03
80	GO:0019216: regulation of lipid metabolic process	7.07E-03
81	GO:0006228: UTP biosynthetic process	7.07E-03
82	GO:0010417: glucuronoxylan biosynthetic process	7.07E-03
83	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.07E-03
84	GO:0019375: galactolipid biosynthetic process	7.07E-03
85	GO:0006183: GTP biosynthetic process	7.07E-03
86	GO:0009098: leucine biosynthetic process	7.07E-03
87	GO:0006241: CTP biosynthetic process	7.07E-03
88	GO:0009800: cinnamic acid biosynthetic process	7.07E-03
89	GO:0007389: pattern specification process	7.07E-03
90	GO:0030259: lipid glycosylation	7.07E-03
91	GO:0042026: protein refolding	7.07E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	7.07E-03
93	GO:0000023: maltose metabolic process	7.44E-03
94	GO:0006508: proteolysis	7.48E-03
95	GO:0019684: photosynthesis, light reaction	8.22E-03
96	GO:0030154: cell differentiation	8.22E-03
97	GO:0044267: cellular protein metabolic process	9.33E-03
98	GO:0010267: production of ta-siRNAs involved in RNA interference	9.33E-03
99	GO:0035196: production of miRNAs involved in gene silencing by miRNA	9.33E-03
100	GO:0006414: translational elongation	9.46E-03
101	GO:0006559: L-phenylalanine catabolic process	9.66E-03
102	GO:0006081: cellular aldehyde metabolic process	9.66E-03
103	GO:0010468: regulation of gene expression	9.66E-03
104	GO:0009308: amine metabolic process	9.66E-03
105	GO:0000096: sulfur amino acid metabolic process	9.66E-03
106	GO:0006569: tryptophan catabolic process	9.66E-03
107	GO:0010072: primary shoot apical meristem specification	9.66E-03
108	GO:0009772: photosynthetic electron transport in photosystem II	9.66E-03
109	GO:0009627: systemic acquired resistance	1.05E-02
110	GO:0006749: glutathione metabolic process	1.25E-02
111	GO:0009698: phenylpropanoid metabolic process	1.25E-02
112	GO:0031347: regulation of defense response	1.25E-02
113	GO:0009306: protein secretion	1.25E-02
114	GO:0010228: vegetative to reproductive phase transition of meristem	1.26E-02
115	GO:0006200: obsolete ATP catabolic process	1.45E-02
116	GO:0042742: defense response to bacterium	1.46E-02
117	GO:0009926: auxin polar transport	1.57E-02
118	GO:0019538: protein metabolic process	1.57E-02
119	GO:0010205: photoinhibition	1.57E-02
120	GO:0032880: regulation of protein localization	1.57E-02
121	GO:0009411: response to UV	1.57E-02
122	GO:0006189: 'de novo' IMP biosynthetic process	1.57E-02
123	GO:0010206: photosystem II repair	1.57E-02
124	GO:0009082: branched-chain amino acid biosynthetic process	1.91E-02
125	GO:0051604: protein maturation	1.91E-02
126	GO:0010099: regulation of photomorphogenesis	1.91E-02
127	GO:0043039: tRNA aminoacylation	1.91E-02
128	GO:0009072: aromatic amino acid family metabolic process	2.27E-02
129	GO:0009585: red, far-red light phototransduction	2.27E-02
130	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.27E-02
131	GO:0040007: growth	2.27E-02
132	GO:0010015: root morphogenesis	2.27E-02
133	GO:0045087: innate immune response	2.27E-02
134	GO:0009735: response to cytokinin	2.28E-02
135	GO:0000302: response to reactive oxygen species	2.66E-02
136	GO:0009832: plant-type cell wall biogenesis	2.66E-02
137	GO:0009834: plant-type secondary cell wall biogenesis	2.66E-02
138	GO:0009684: indoleacetic acid biosynthetic process	2.66E-02
139	GO:0009407: toxin catabolic process	2.66E-02
140	GO:0016117: carotenoid biosynthetic process	2.67E-02
141	GO:0009790: embryo development	2.88E-02
142	GO:0019761: glucosinolate biosynthetic process	2.88E-02
143	GO:0019252: starch biosynthetic process	3.02E-02
144	GO:0045492: xylan biosynthetic process	3.50E-02
145	GO:0019722: calcium-mediated signaling	3.95E-02
146	GO:0009612: response to mechanical stimulus	3.95E-02
147	GO:0048316: seed development	4.42E-02
148	GO:0008033: tRNA processing	4.42E-02
149	GO:0006633: fatty acid biosynthetic process	4.54E-02
150	GO:0015996: chlorophyll catabolic process	4.90E-02
151	GO:0005982: starch metabolic process	4.90E-02
152	GO:0010075: regulation of meristem growth	4.90E-02
153	GO:0006636: unsaturated fatty acid biosynthetic process	4.90E-02
154	GO:0010197: polar nucleus fusion	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
5	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0004252: serine-type endopeptidase activity	4.99E-06
10	GO:0004812: aminoacyl-tRNA ligase activity	3.25E-05
11	GO:0051087: chaperone binding	8.50E-05
12	GO:0000774: adenyl-nucleotide exchange factor activity	1.50E-04
13	GO:0003735: structural constituent of ribosome	2.44E-04
14	GO:0004659: prenyltransferase activity	3.16E-04
15	GO:0016209: antioxidant activity	3.16E-04
16	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.17E-03
17	GO:0008194: UDP-glycosyltransferase activity	1.25E-03
18	GO:0004817: cysteine-tRNA ligase activity	1.25E-03
19	GO:0004824: lysine-tRNA ligase activity	1.25E-03
20	GO:0034256: chlorophyll(ide) b reductase activity	1.25E-03
21	GO:0004827: proline-tRNA ligase activity	1.25E-03
22	GO:0003989: acetyl-CoA carboxylase activity	1.25E-03
23	GO:0016851: magnesium chelatase activity	1.25E-03
24	GO:0004823: leucine-tRNA ligase activity	1.25E-03
25	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.25E-03
26	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.25E-03
27	GO:0004831: tyrosine-tRNA ligase activity	1.25E-03
28	GO:0035250: UDP-galactosyltransferase activity	1.25E-03
29	GO:0004362: glutathione-disulfide reductase activity	1.25E-03
30	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.25E-03
31	GO:0031177: phosphopantetheine binding	1.25E-03
32	GO:0008312: 7S RNA binding	1.58E-03
33	GO:0004826: phenylalanine-tRNA ligase activity	2.81E-03
34	GO:0004462: lactoylglutathione lyase activity	2.81E-03
35	GO:0004853: uroporphyrinogen decarboxylase activity	2.81E-03
36	GO:0004075: biotin carboxylase activity	2.81E-03
37	GO:0045485: omega-6 fatty acid desaturase activity	2.81E-03
38	GO:0004392: heme oxygenase (decyclizing) activity	2.81E-03
39	GO:0051920: peroxiredoxin activity	2.81E-03
40	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.81E-03
41	GO:0046914: transition metal ion binding	3.12E-03
42	GO:0008236: serine-type peptidase activity	4.73E-03
43	GO:0015020: glucuronosyltransferase activity	4.78E-03
44	GO:0080116: glucuronoxylan glucuronosyltransferase activity	4.78E-03
45	GO:0008233: peptidase activity	4.90E-03
46	GO:0003746: translation elongation factor activity	6.25E-03
47	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	7.07E-03
48	GO:0004765: shikimate kinase activity	7.07E-03
49	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	7.07E-03
50	GO:0004550: nucleoside diphosphate kinase activity	7.07E-03
51	GO:0045548: phenylalanine ammonia-lyase activity	7.07E-03
52	GO:0003913: DNA photolyase activity	7.07E-03
53	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	7.07E-03
54	GO:0070569: uridylyltransferase activity	7.07E-03
55	GO:0016987: sigma factor activity	9.66E-03
56	GO:0016841: ammonia-lyase activity	9.66E-03
57	GO:0031072: heat shock protein binding	1.31E-02
58	GO:0051082: unfolded protein binding	1.37E-02
59	GO:0019843: rRNA binding	1.76E-02
60	GO:0005524: ATP binding	1.89E-02
61	GO:0043022: ribosome binding	1.91E-02
62	GO:0008266: poly(U) RNA binding	2.27E-02
63	GO:0005507: copper ion binding	2.34E-02
64	GO:0000049: tRNA binding	2.66E-02
65	GO:0016887: ATPase activity	2.73E-02
66	GO:0043531: ADP binding	3.50E-02
67	GO:0003690: double-stranded DNA binding	3.50E-02
68	GO:0017111: nucleoside-triphosphatase activity	4.16E-02
69	GO:0005525: GTP binding	4.45E-02
70	GO:0000166: nucleotide binding	4.57E-02
71	GO:0048038: quinone binding	4.90E-02
72	GO:0004527: exonuclease activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009507: chloroplast	4.33E-40
5	GO:0009570: chloroplast stroma	3.37E-35
6	GO:0009941: chloroplast envelope	1.76E-27
7	GO:0009535: chloroplast thylakoid membrane	2.78E-10
8	GO:0009840: chloroplastic endopeptidase Clp complex	3.52E-10
9	GO:0009579: thylakoid	6.49E-10
10	GO:0009532: plastid stroma	2.64E-08
11	GO:0005840: ribosome	1.52E-06
12	GO:0009534: chloroplast thylakoid	4.66E-06
13	GO:0030529: intracellular ribonucleoprotein complex	6.65E-04
14	GO:0010319: stromule	9.63E-04
15	GO:0048500: signal recognition particle	1.17E-03
16	GO:0000311: plastid large ribosomal subunit	1.25E-03
17	GO:0009526: plastid envelope	1.25E-03
18	GO:0005960: glycine cleavage complex	1.25E-03
19	GO:0009536: plastid	2.27E-03
20	GO:0009706: chloroplast inner membrane	2.41E-03
21	GO:0009533: chloroplast stromal thylakoid	2.81E-03
22	GO:0005737: cytoplasm	1.42E-02
23	GO:0005622: intracellular	1.50E-02
24	GO:0048046: apoplast	1.81E-02
25	GO:0005759: mitochondrial matrix	1.93E-02
26	GO:0005875: microtubule associated complex	2.88E-02
27	GO:0015934: large ribosomal subunit	3.09E-02
28	GO:0005739: mitochondrion	3.43E-02
29	GO:0009295: nucleoid	3.50E-02
30	GO:0042651: thylakoid membrane	4.42E-02