Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G806622

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035436: triose phosphate transmembrane transport0.00E+00
2GO:0015714: phosphoenolpyruvate transport0.00E+00
3GO:0071486: cellular response to high light intensity0.00E+00
4GO:0042794: rRNA transcription from plastid promoter0.00E+00
5GO:0043043: peptide biosynthetic process0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0089722: phosphoenolpyruvate transmembrane transport0.00E+00
8GO:0009234: menaquinone biosynthetic process0.00E+00
9GO:0006436: tryptophanyl-tRNA aminoacylation0.00E+00
10GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.72E-11
11GO:0010027: thylakoid membrane organization2.18E-10
12GO:0042793: transcription from plastid promoter1.53E-07
13GO:0015995: chlorophyll biosynthetic process9.89E-07
14GO:0010207: photosystem II assembly2.53E-06
15GO:0009902: chloroplast relocation2.90E-06
16GO:0045036: protein targeting to chloroplast8.40E-06
17GO:0016226: iron-sulfur cluster assembly9.50E-06
18GO:0006098: pentose-phosphate shunt1.20E-05
19GO:0006636: unsaturated fatty acid biosynthetic process1.46E-05
20GO:0010155: regulation of proton transport2.88E-05
21GO:0043085: positive regulation of catalytic activity3.69E-05
22GO:0009773: photosynthetic electron transport in photosystem I4.24E-05
23GO:0006364: rRNA processing4.67E-05
24GO:0009443: pyridoxal 5'-phosphate salvage2.06E-04
25GO:0006434: seryl-tRNA aminoacylation2.06E-04
26GO:0009069: serine family amino acid metabolic process2.06E-04
27GO:0019253: reductive pentose-phosphate cycle2.06E-04
28GO:0019676: ammonia assimilation cycle2.06E-04
29GO:0015979: photosynthesis2.10E-04
30GO:0009658: chloroplast organization2.83E-04
31GO:0042372: phylloquinone biosynthetic process4.95E-04
32GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.95E-04
33GO:0006412: translation5.53E-04
34GO:0019684: photosynthesis, light reaction6.39E-04
35GO:0030154: cell differentiation6.39E-04
36GO:0045893: positive regulation of transcription, DNA-templated8.38E-04
37GO:0007186: G-protein coupled receptor signaling pathway8.44E-04
38GO:0006733: oxidoreduction coenzyme metabolic process8.44E-04
39GO:0034599: cellular response to oxidative stress8.44E-04
40GO:0035304: regulation of protein dephosphorylation9.26E-04
41GO:0046777: protein autophosphorylation9.26E-04
42GO:0009793: embryo development ending in seed dormancy1.16E-03
43GO:0045038: protein import into chloroplast thylakoid membrane1.25E-03
44GO:0009117: nucleotide metabolic process1.25E-03
45GO:0045037: protein import into chloroplast stroma1.25E-03
46GO:0000096: sulfur amino acid metabolic process1.69E-03
47GO:0006569: tryptophan catabolic process1.69E-03
48GO:0009088: threonine biosynthetic process1.69E-03
49GO:0019748: secondary metabolic process1.69E-03
50GO:0007568: aging1.69E-03
51GO:0019344: cysteine biosynthetic process2.08E-03
52GO:0016117: carotenoid biosynthetic process2.08E-03
53GO:0009637: response to blue light2.08E-03
54GO:0007005: mitochondrion organization2.15E-03
55GO:0006542: glutamine biosynthetic process2.15E-03
56GO:0010114: response to red light2.39E-03
57GO:0009814: defense response, incompatible interaction2.65E-03
58GO:0009108: coenzyme biosynthetic process2.65E-03
59GO:0034660: ncRNA metabolic process2.65E-03
60GO:0006801: superoxide metabolic process2.65E-03
61GO:0009106: lipoate metabolic process2.65E-03
62GO:0006766: vitamin metabolic process2.65E-03
63GO:0010218: response to far red light2.74E-03
64GO:0048481: plant ovule development2.92E-03
65GO:0000023: maltose metabolic process2.92E-03
66GO:0006418: tRNA aminoacylation for protein translation3.12E-03
67GO:0006414: translational elongation3.54E-03
68GO:0015977: carbon fixation3.82E-03
69GO:0010228: vegetative to reproductive phase transition of meristem4.46E-03
70GO:0009684: indoleacetic acid biosynthetic process4.46E-03
71GO:0009407: toxin catabolic process4.46E-03
72GO:0009409: response to cold4.87E-03
73GO:0009697: salicylic acid biosynthetic process5.11E-03
74GO:0006354: DNA-templated transcription, elongation5.11E-03
75GO:0008380: RNA splicing5.11E-03
76GO:0009965: leaf morphogenesis5.19E-03
77GO:0006546: glycine catabolic process5.81E-03
78GO:0006655: phosphatidylglycerol biosynthetic process7.31E-03
79GO:0007030: Golgi organization8.09E-03
80GO:0015996: chlorophyll catabolic process8.09E-03
81GO:0019252: starch biosynthetic process8.85E-03
82GO:0009750: response to fructose8.92E-03
83GO:0006833: water transport8.92E-03
84GO:0006972: hyperosmotic response8.92E-03
85GO:0042545: cell wall modification8.92E-03
86GO:0009749: response to glucose9.77E-03
87GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione1.06E-02
88GO:0006417: regulation of translation1.06E-02
89GO:0042742: defense response to bacterium1.18E-02
90GO:0010182: sugar mediated signaling pathway1.25E-02
91GO:0006807: nitrogen compound metabolic process1.25E-02
92GO:0010224: response to UV-B1.25E-02
93GO:0009695: jasmonic acid biosynthetic process1.34E-02
94GO:0032502: developmental process1.34E-02
95GO:0006184: obsolete GTP catabolic process1.45E-02
96GO:0009853: photorespiration1.65E-02
97GO:0000413: protein peptidyl-prolyl isomerization1.75E-02
98GO:0006520: cellular amino acid metabolic process1.75E-02
99GO:0009735: response to cytokinin1.97E-02
100GO:0009073: aromatic amino acid family biosynthetic process2.09E-02
101GO:0009790: embryo development2.32E-02
102GO:0019761: glucosinolate biosynthetic process2.32E-02
103GO:0009744: response to sucrose3.21E-02
104GO:0008652: cellular amino acid biosynthetic process3.62E-02
105GO:0009644: response to high light intensity3.76E-02
106GO:0006457: protein folding4.83E-02
RankGO TermAdjusted P value
1GO:0004830: tryptophan-tRNA ligase activity0.00E+00
2GO:0015121: phosphoenolpyruvate:phosphate antiporter activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0004802: transketolase activity0.00E+00
5GO:0031679: NADH dehydrogenase (plastoquinone) activity0.00E+00
6GO:0009670: triose-phosphate:phosphate antiporter activity0.00E+00
7GO:0004828: serine-tRNA ligase activity2.06E-04
8GO:0070402: NADPH binding2.06E-04
9GO:0004795: threonine synthase activity2.06E-04
10GO:0004765: shikimate kinase activity1.25E-03
11GO:0016984: ribulose-bisphosphate carboxylase activity1.25E-03
12GO:0003735: structural constituent of ribosome1.34E-03
13GO:0004356: glutamate-ammonia ligase activity2.15E-03
14GO:0003746: translation elongation factor activity2.57E-03
15GO:0004784: superoxide dismutase activity3.21E-03
16GO:0004812: aminoacyl-tRNA ligase activity3.54E-03
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.46E-03
18GO:0003690: double-stranded DNA binding5.81E-03
19GO:0016874: ligase activity9.60E-03
20GO:0004497: monooxygenase activity1.54E-02
21GO:0004222: metalloendopeptidase activity1.54E-02
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.97E-02
23GO:0003924: GTPase activity4.57E-02
24GO:0015035: protein disulfide oxidoreductase activity4.97E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.07E-17
2GO:0009570: chloroplast stroma3.93E-16
3GO:0009941: chloroplast envelope9.61E-14
4GO:0009579: thylakoid1.67E-08
5GO:0009535: chloroplast thylakoid membrane2.82E-08
6GO:0009295: nucleoid6.16E-06
7GO:0009543: chloroplast thylakoid lumen1.12E-05
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.88E-05
9GO:0009527: plastid outer membrane2.06E-04
10GO:0030093: chloroplast photosystem I2.06E-04
11GO:0009528: plastid inner membrane2.06E-04
12GO:0031977: thylakoid lumen2.13E-04
13GO:0009534: chloroplast thylakoid4.29E-04
14GO:0009508: plastid chromosome1.69E-03
15GO:0009523: photosystem II1.79E-03
16GO:0005840: ribosome2.07E-03
17GO:0009532: plastid stroma3.21E-03
18GO:0005739: mitochondrion4.74E-03
19GO:0048046: apoplast6.01E-03
20GO:0005622: intracellular7.30E-03
21GO:0030529: intracellular ribonucleoprotein complex9.30E-03
22GO:0009536: plastid1.43E-02
23GO:0009706: chloroplast inner membrane1.54E-02
24GO:0010319: stromule2.44E-02