co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM5G803490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
2	GO:0032543: mitochondrial translation	0.00E+00
3	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0043043: peptide biosynthetic process	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0090391: granum assembly	0.00E+00
8	GO:0009658: chloroplast organization	6.16E-09
9	GO:0006779: porphyrin-containing compound biosynthetic process	7.47E-08
10	GO:0010027: thylakoid membrane organization	3.65E-07
11	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.02E-06
12	GO:0010207: photosystem II assembly	1.56E-06
13	GO:0006457: protein folding	4.34E-06
14	GO:0042793: transcription from plastid promoter	8.62E-06
15	GO:1901671: positive regulation of superoxide dismutase activity	1.93E-05
16	GO:0035304: regulation of protein dephosphorylation	4.73E-05
17	GO:0006733: oxidoreduction coenzyme metabolic process	6.66E-05
18	GO:0015995: chlorophyll biosynthetic process	9.53E-05
19	GO:0006546: glycine catabolic process	1.25E-04
20	GO:0009902: chloroplast relocation	1.26E-04
21	GO:0009117: nucleotide metabolic process	1.45E-04
22	GO:0045037: protein import into chloroplast stroma	1.45E-04
23	GO:0006353: DNA-templated transcription, termination	1.45E-04
24	GO:0006782: protoporphyrinogen IX biosynthetic process	1.45E-04
25	GO:0006655: phosphatidylglycerol biosynthetic process	2.11E-04
26	GO:0019344: cysteine biosynthetic process	2.31E-04
27	GO:0019748: secondary metabolic process	2.56E-04
28	GO:0045893: positive regulation of transcription, DNA-templated	2.78E-04
29	GO:0006364: rRNA processing	4.30E-04
30	GO:0006418: tRNA aminoacylation for protein translation	4.77E-04
31	GO:0009106: lipoate metabolic process	5.69E-04
32	GO:0006766: vitamin metabolic process	5.69E-04
33	GO:0009108: coenzyme biosynthetic process	5.69E-04
34	GO:0033014: tetrapyrrole biosynthetic process	5.69E-04
35	GO:0006412: translation	6.17E-04
36	GO:0009695: jasmonic acid biosynthetic process	7.53E-04
37	GO:0006788: heme oxidation	7.69E-04
38	GO:0006433: prolyl-tRNA aminoacylation	7.69E-04
39	GO:0006423: cysteinyl-tRNA aminoacylation	7.69E-04
40	GO:0006430: lysyl-tRNA aminoacylation	7.69E-04
41	GO:0006429: leucyl-tRNA aminoacylation	7.69E-04
42	GO:0010190: cytochrome b6f complex assembly	7.69E-04
43	GO:0008361: regulation of cell size	7.69E-04
44	GO:0044272: sulfur compound biosynthetic process	1.77E-03
45	GO:0019464: glycine decarboxylation via glycine cleavage system	1.77E-03
46	GO:0010109: regulation of photosynthesis	1.77E-03
47	GO:0032544: plastid translation	1.77E-03
48	GO:0010024: phytochromobilin biosynthetic process	1.77E-03
49	GO:0048653: anther development	1.77E-03
50	GO:0010380: regulation of chlorophyll biosynthetic process	1.77E-03
51	GO:0045036: protein targeting to chloroplast	2.26E-03
52	GO:0016226: iron-sulfur cluster assembly	2.53E-03
53	GO:0031408: oxylipin biosynthetic process	2.64E-03
54	GO:0043067: regulation of programmed cell death	2.93E-03
55	GO:0009247: glycolipid biosynthetic process	2.93E-03
56	GO:0000304: response to singlet oxygen	2.93E-03
57	GO:0006571: tyrosine biosynthetic process	2.93E-03
58	GO:0006450: regulation of translational fidelity	2.93E-03
59	GO:0019684: photosynthesis, light reaction	4.07E-03
60	GO:0030154: cell differentiation	4.07E-03
61	GO:0006165: nucleoside diphosphate phosphorylation	4.35E-03
62	GO:0019216: regulation of lipid metabolic process	4.35E-03
63	GO:0006228: UTP biosynthetic process	4.35E-03
64	GO:0010417: glucuronoxylan biosynthetic process	4.35E-03
65	GO:0019375: galactolipid biosynthetic process	4.35E-03
66	GO:0006183: GTP biosynthetic process	4.35E-03
67	GO:0009098: leucine biosynthetic process	4.35E-03
68	GO:0006241: CTP biosynthetic process	4.35E-03
69	GO:0045038: protein import into chloroplast thylakoid membrane	4.35E-03
70	GO:0007389: pattern specification process	4.35E-03
71	GO:0030259: lipid glycosylation	4.35E-03
72	GO:0006081: cellular aldehyde metabolic process	5.92E-03
73	GO:0009308: amine metabolic process	5.92E-03
74	GO:0000096: sulfur amino acid metabolic process	5.92E-03
75	GO:0006749: glutathione metabolic process	7.67E-03
76	GO:0009409: response to cold	9.29E-03
77	GO:0009926: auxin polar transport	9.58E-03
78	GO:0019538: protein metabolic process	9.58E-03
79	GO:0010205: photoinhibition	9.58E-03
80	GO:0006032: chitin catabolic process	9.58E-03
81	GO:0009411: response to UV	9.58E-03
82	GO:0009735: response to cytokinin	1.13E-02
83	GO:0009082: branched-chain amino acid biosynthetic process	1.16E-02
84	GO:0006399: tRNA metabolic process	1.16E-02
85	GO:0009073: aromatic amino acid family biosynthetic process	1.23E-02
86	GO:0042742: defense response to bacterium	1.24E-02
87	GO:0016117: carotenoid biosynthetic process	1.32E-02
88	GO:0009072: aromatic amino acid family metabolic process	1.38E-02
89	GO:0009585: red, far-red light phototransduction	1.38E-02
90	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.38E-02
91	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.38E-02
92	GO:0040007: growth	1.38E-02
93	GO:0010015: root morphogenesis	1.38E-02
94	GO:0045087: innate immune response	1.38E-02
95	GO:0009790: embryo development	1.43E-02
96	GO:0010114: response to red light	1.53E-02
97	GO:0009832: plant-type cell wall biogenesis	1.62E-02
98	GO:0009834: plant-type secondary cell wall biogenesis	1.62E-02
99	GO:0009407: toxin catabolic process	1.62E-02
100	GO:0006354: DNA-templated transcription, elongation	1.86E-02
101	GO:0016556: mRNA modification	1.86E-02
102	GO:0048481: plant ovule development	1.88E-02
103	GO:0009793: embryo development ending in seed dormancy	2.00E-02
104	GO:0045492: xylan biosynthetic process	2.12E-02
105	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.12E-02
106	GO:0006414: translational elongation	2.26E-02
107	GO:0016998: cell wall macromolecule catabolic process	2.40E-02
108	GO:0048316: seed development	2.68E-02
109	GO:0045454: cell redox homeostasis	2.72E-02
110	GO:0005982: starch metabolic process	2.98E-02
111	GO:0010075: regulation of meristem growth	2.98E-02
112	GO:0006636: unsaturated fatty acid biosynthetic process	2.98E-02
113	GO:0010197: polar nucleus fusion	2.98E-02
114	GO:0042545: cell wall modification	3.28E-02
115	GO:0009965: leaf morphogenesis	3.32E-02
116	GO:0007623: circadian rhythm	3.60E-02
117	GO:0009664: plant-type cell wall organization	3.93E-02
118	GO:0044267: cellular protein metabolic process	3.93E-02
119	GO:0010155: regulation of proton transport	3.93E-02
120	GO:0009408: response to heat	4.23E-02
121	GO:0006352: DNA-templated transcription, initiation	4.27E-02
122	GO:0010103: stomatal complex morphogenesis	4.27E-02
123	GO:0009773: photosynthetic electron transport in photosystem I	4.62E-02
124	GO:0046777: protein autophosphorylation	4.62E-02
125	GO:0009620: response to fungus	4.98E-02
126	GO:0009553: embryo sac development	4.98E-02
127	GO:0009817: defense response to fungus, incompatible interaction	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
3	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0004853: uroporphyrinogen decarboxylase activity	1.93E-05
6	GO:0051087: chaperone binding	2.80E-05
7	GO:0000774: adenyl-nucleotide exchange factor activity	6.66E-05
8	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.69E-04
9	GO:0004812: aminoacyl-tRNA ligase activity	5.87E-04
10	GO:0008194: UDP-glycosyltransferase activity	7.69E-04
11	GO:0004817: cysteine-tRNA ligase activity	7.69E-04
12	GO:0004824: lysine-tRNA ligase activity	7.69E-04
13	GO:0004827: proline-tRNA ligase activity	7.69E-04
14	GO:0016851: magnesium chelatase activity	7.69E-04
15	GO:0004823: leucine-tRNA ligase activity	7.69E-04
16	GO:0003862: 3-isopropylmalate dehydrogenase activity	7.69E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.69E-04
18	GO:0035250: UDP-galactosyltransferase activity	7.69E-04
19	GO:0004362: glutathione-disulfide reductase activity	7.69E-04
20	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	7.69E-04
21	GO:0031177: phosphopantetheine binding	7.69E-04
22	GO:0046914: transition metal ion binding	1.58E-03
23	GO:0004462: lactoylglutathione lyase activity	1.77E-03
24	GO:0004665: prephenate dehydrogenase (NADP+) activity	1.77E-03
25	GO:0045485: omega-6 fatty acid desaturase activity	1.77E-03
26	GO:0004392: heme oxygenase (decyclizing) activity	1.77E-03
27	GO:0051920: peroxiredoxin activity	1.77E-03
28	GO:0008977: prephenate dehydrogenase (NAD+) activity	1.77E-03
29	GO:0004252: serine-type endopeptidase activity	2.37E-03
30	GO:0015020: glucuronosyltransferase activity	2.93E-03
31	GO:0080116: glucuronoxylan glucuronosyltransferase activity	2.93E-03
32	GO:0016831: carboxy-lyase activity	3.56E-03
33	GO:0004659: prenyltransferase activity	4.35E-03
34	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	4.35E-03
35	GO:0004765: shikimate kinase activity	4.35E-03
36	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	4.35E-03
37	GO:0004550: nucleoside diphosphate kinase activity	4.35E-03
38	GO:0016209: antioxidant activity	4.35E-03
39	GO:0003913: DNA photolyase activity	4.35E-03
40	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	4.35E-03
41	GO:0016987: sigma factor activity	5.92E-03
42	GO:0003735: structural constituent of ribosome	5.93E-03
43	GO:0019843: rRNA binding	8.72E-03
44	GO:0004568: chitinase activity	9.58E-03
45	GO:0008312: 7S RNA binding	1.16E-02
46	GO:0008266: poly(U) RNA binding	1.38E-02
47	GO:0003746: translation elongation factor activity	1.64E-02
48	GO:0005507: copper ion binding	1.90E-02
49	GO:0051082: unfolded protein binding	2.06E-02
50	GO:0043531: ADP binding	2.12E-02
51	GO:0048037: cofactor binding	2.12E-02
52	GO:0008081: phosphoric diester hydrolase activity	2.98E-02
53	GO:0048038: quinone binding	2.98E-02
54	GO:0000156: phosphorelay response regulator activity	2.98E-02
55	GO:0016760: cellulose synthase (UDP-forming) activity	2.98E-02
56	GO:0004527: exonuclease activity	2.98E-02
57	GO:0042803: protein homodimerization activity	3.15E-02
58	GO:0008233: peptidase activity	3.95E-02
59	GO:0016829: lyase activity	3.97E-02
60	GO:0015035: protein disulfide oxidoreductase activity	4.19E-02
61	GO:0051287: NAD binding	4.57E-02
62	GO:0031072: heat shock protein binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009507: chloroplast	1.03E-26
3	GO:0009570: chloroplast stroma	6.92E-25
4	GO:0009941: chloroplast envelope	1.31E-20
5	GO:0009579: thylakoid	7.11E-09
6	GO:0009840: chloroplastic endopeptidase Clp complex	3.95E-06
7	GO:0009535: chloroplast thylakoid membrane	2.04E-05
8	GO:0009532: plastid stroma	2.80E-05
9	GO:0009534: chloroplast thylakoid	9.53E-05
10	GO:0009536: plastid	3.72E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	7.69E-04
12	GO:0000311: plastid large ribosomal subunit	7.69E-04
13	GO:0005960: glycine cleavage complex	7.69E-04
14	GO:0009706: chloroplast inner membrane	9.91E-04
15	GO:0005840: ribosome	1.69E-03
16	GO:0010319: stromule	2.32E-03
17	GO:0030529: intracellular ribonucleoprotein complex	2.47E-03
18	GO:0005759: mitochondrial matrix	9.55E-03
19	GO:0048500: signal recognition particle	9.58E-03
20	GO:0048046: apoplast	1.21E-02
21	GO:0005737: cytoplasm	1.56E-02
22	GO:0009295: nucleoid	2.12E-02
23	GO:0042651: thylakoid membrane	2.68E-02
24	GO:0005622: intracellular	3.77E-02
25	GO:0019013: viral nucleocapsid	4.62E-02