co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G701566

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0006233: dTDP biosynthetic process	0.00E+00
3	GO:0032465: regulation of cytokinesis	0.00E+00
4	GO:0010425: DNA methylation on cytosine within a CNG sequence	0.00E+00
5	GO:0010389: regulation of G2/M transition of mitotic cell cycle	6.40E-07
6	GO:0007049: cell cycle	8.31E-07
7	GO:0051567: histone H3-K9 methylation	3.26E-06
8	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.20E-06
9	GO:0043987: histone H3-S10 phosphorylation	5.20E-06
10	GO:0045814: negative regulation of gene expression, epigenetic	5.20E-06
11	GO:0016572: histone phosphorylation	7.98E-06
12	GO:0006342: chromatin silencing	7.98E-06
13	GO:0009957: epidermal cell fate specification	1.89E-05
14	GO:0090116: C-5 methylation of cytosine	4.33E-05
15	GO:0009909: regulation of flower development	4.63E-05
16	GO:0006260: DNA replication	5.09E-05
17	GO:0006306: DNA methylation	8.49E-05
18	GO:0051301: cell division	1.32E-04
19	GO:0007018: microtubule-based movement	1.61E-04
20	GO:0048449: floral organ formation	2.62E-04
21	GO:0006275: regulation of DNA replication	3.14E-04
22	GO:0007059: chromosome segregation	3.74E-04
23	GO:1990426: mitotic recombination-dependent replication fork processing	3.74E-04
24	GO:0006259: DNA metabolic process	5.53E-04
25	GO:0000911: cytokinesis by cell plate formation	7.33E-04
26	GO:0042547: cell wall modification involved in multidimensional cell growth	8.76E-04
27	GO:0009956: radial pattern formation	8.76E-04
28	GO:0009755: hormone-mediated signaling pathway	8.76E-04
29	GO:0031048: chromatin silencing by small RNA	9.57E-04
30	GO:0009294: DNA mediated transformation	1.12E-03
31	GO:0006281: DNA repair	1.22E-03
32	GO:0022904: respiratory electron transport chain	1.48E-03
33	GO:0009966: regulation of signal transduction	1.67E-03
34	GO:0008654: phospholipid biosynthetic process	2.15E-03
35	GO:0008356: asymmetric cell division	2.15E-03
36	GO:0035434: copper ion transmembrane transport	2.15E-03
37	GO:0032147: activation of protein kinase activity	2.15E-03
38	GO:0006346: methylation-dependent chromatin silencing	2.31E-03
39	GO:0006265: DNA topological change	2.89E-03
40	GO:0006825: copper ion transport	2.89E-03
41	GO:0060236: regulation of mitotic spindle organization	2.89E-03
42	GO:0032875: regulation of DNA endoreduplication	2.89E-03
43	GO:0000226: microtubule cytoskeleton organization	3.70E-03
44	GO:0010087: phloem or xylem histogenesis	3.76E-03
45	GO:0010583: response to cyclopentenone	4.68E-03
46	GO:0055072: iron ion homeostasis	4.68E-03
47	GO:0009934: regulation of meristem structural organization	4.68E-03
48	GO:0030245: cellulose catabolic process	5.66E-03
49	GO:0010074: maintenance of meristem identity	5.66E-03
50	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.73E-03
51	GO:0006302: double-strand break repair	6.73E-03
52	GO:0016570: histone modification	9.04E-03
53	GO:0048453: sepal formation	9.04E-03
54	GO:0010048: vernalization response	9.04E-03
55	GO:0006284: base-excision repair	9.04E-03
56	GO:0006974: cellular response to DNA damage stimulus	1.03E-02
57	GO:0051225: spindle assembly	1.03E-02
58	GO:0007020: microtubule nucleation	1.03E-02
59	GO:0019915: lipid storage	1.03E-02
60	GO:0048451: petal formation	1.03E-02
61	GO:0016571: histone methylation	1.16E-02
62	GO:0010332: response to gamma radiation	1.16E-02
63	GO:0006289: nucleotide-excision repair	1.29E-02
64	GO:0048316: seed development	1.29E-02
65	GO:0006406: mRNA export from nucleus	1.29E-02
66	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.44E-02
67	GO:0010162: seed dormancy process	1.44E-02
68	GO:0050826: response to freezing	1.58E-02
69	GO:0006261: DNA-dependent DNA replication	1.58E-02
70	GO:0000724: double-strand break repair via homologous recombination	1.73E-02
71	GO:0006310: DNA recombination	1.89E-02
72	GO:0044267: cellular protein metabolic process	1.89E-02
73	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.06E-02
74	GO:0010182: sugar mediated signaling pathway	2.22E-02
75	GO:0000278: mitotic cell cycle	2.40E-02
76	GO:0009553: embryo sac development	2.40E-02
77	GO:0009738: abscisic acid-activated signaling pathway	2.57E-02
78	GO:0009845: seed germination	2.75E-02
79	GO:0031047: gene silencing by RNA	2.94E-02
80	GO:0000165: MAPK cascade	3.13E-02
81	GO:0009933: meristem structural organization	3.13E-02
82	GO:0006270: DNA replication initiation	3.33E-02
83	GO:0009560: embryo sac egg cell differentiation	3.33E-02
84	GO:0006468: protein phosphorylation	3.35E-02
85	GO:0016567: protein ubiquitination	3.50E-02
86	GO:0016579: protein deubiquitination	3.73E-02
87	GO:0048366: leaf development	3.94E-02
88	GO:0006511: ubiquitin-dependent protein catabolic process	4.06E-02
89	GO:0051726: regulation of cell cycle	4.15E-02
90	GO:0043086: negative regulation of catalytic activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	0.00E+00
2	GO:0008409: 5'-3' exonuclease activity	0.00E+00
3	GO:0004798: thymidylate kinase activity	0.00E+00
4	GO:0035175: histone kinase activity (H3-S10 specific)	5.20E-06
5	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.33E-05
6	GO:0003777: microtubule motor activity	1.61E-04
7	GO:0019905: syntaxin binding	3.74E-04
8	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.74E-04
9	GO:0017108: 5'-flap endonuclease activity	3.74E-04
10	GO:0000150: recombinase activity	3.74E-04
11	GO:0003916: DNA topoisomerase activity	3.74E-04
12	GO:0008017: microtubule binding	4.01E-04
13	GO:0003684: damaged DNA binding	5.53E-04
14	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	8.76E-04
15	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.48E-03
16	GO:0070628: proteasome binding	1.48E-03
17	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	1.48E-03
18	GO:0005375: copper ion transmembrane transporter activity	2.15E-03
19	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.15E-03
20	GO:0008810: cellulase activity	4.68E-03
21	GO:0008094: DNA-dependent ATPase activity	5.66E-03
22	GO:0043130: ubiquitin binding	5.66E-03
23	GO:0003887: DNA-directed DNA polymerase activity	5.66E-03
24	GO:0005524: ATP binding	6.24E-03
25	GO:0004518: nuclease activity	9.04E-03
26	GO:0004707: MAP kinase activity	1.03E-02
27	GO:0003697: single-stranded DNA binding	1.03E-02
28	GO:0003690: double-stranded DNA binding	1.03E-02
29	GO:0004519: endonuclease activity	1.16E-02
30	GO:0004527: exonuclease activity	1.44E-02
31	GO:0019901: protein kinase binding	1.58E-02
32	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.58E-02
33	GO:0003677: DNA binding	1.79E-02
34	GO:0019829: cation-transporting ATPase activity	1.89E-02
35	GO:0051082: unfolded protein binding	2.99E-02
36	GO:0004672: protein kinase activity	3.21E-02
37	GO:0042802: identical protein binding	3.33E-02
38	GO:0008236: serine-type peptidase activity	3.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0005871: kinesin complex	1.46E-04
3	GO:0005819: spindle	1.79E-04
4	GO:0005874: microtubule	8.04E-04
5	GO:0000775: chromosome, centromeric region	1.48E-03
6	GO:0005971: ribonucleoside-diphosphate reductase complex	1.48E-03
7	GO:0005654: nucleoplasm	1.67E-03
8	GO:0005875: microtubule associated complex	5.07E-03
9	GO:0016272: prefoldin complex	5.66E-03
10	GO:0016604: nuclear body	5.66E-03
11	GO:0031966: mitochondrial membrane	1.89E-02
12	GO:0019013: viral nucleocapsid	2.22E-02
13	GO:0005634: nucleus	2.52E-02
14	GO:0005635: nuclear envelope	2.75E-02
15	GO:0005694: chromosome	4.17E-02