co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G700683

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0032543: mitochondrial translation	0.00E+00
4	GO:0046506: sulfolipid biosynthetic process	0.00E+00
5	GO:1901259: chloroplast rRNA processing	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
8	GO:0042780: tRNA 3'-end processing	0.00E+00
9	GO:1900865: chloroplast RNA modification	0.00E+00
10	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
11	GO:0009658: chloroplast organization	4.56E-10
12	GO:0006399: tRNA metabolic process	1.05E-07
13	GO:0006457: protein folding	2.45E-06
14	GO:1901671: positive regulation of superoxide dismutase activity	8.48E-06
15	GO:0006364: rRNA processing	9.46E-06
16	GO:0009306: protein secretion	1.97E-04
17	GO:0006429: leucyl-tRNA aminoacylation	4.90E-04
18	GO:0045893: positive regulation of transcription, DNA-templated	6.14E-04
19	GO:0016556: mRNA modification	8.22E-04
20	GO:0010027: thylakoid membrane organization	8.68E-04
21	GO:0006546: glycine catabolic process	1.00E-03
22	GO:0006779: porphyrin-containing compound biosynthetic process	1.00E-03
23	GO:0009225: nucleotide-sugar metabolic process	1.14E-03
24	GO:0019464: glycine decarboxylation via glycine cleavage system	1.14E-03
25	GO:0006432: phenylalanyl-tRNA aminoacylation	1.14E-03
26	GO:0051555: flavonol biosynthetic process	1.14E-03
27	GO:0019481: L-alanine catabolic process, by transamination	1.14E-03
28	GO:0010253: UDP-rhamnose biosynthetic process	1.14E-03
29	GO:0010192: mucilage biosynthetic process	1.14E-03
30	GO:0045036: protein targeting to chloroplast	1.20E-03
31	GO:0006655: phosphatidylglycerol biosynthetic process	1.41E-03
32	GO:0042793: transcription from plastid promoter	1.41E-03
33	GO:0051607: defense response to virus	1.41E-03
34	GO:0008299: isoprenoid biosynthetic process	1.64E-03
35	GO:0051085: chaperone mediated protein folding requiring cofactor	1.91E-03
36	GO:0045226: extracellular polysaccharide biosynthetic process	1.91E-03
37	GO:0016075: rRNA catabolic process	1.91E-03
38	GO:0009231: riboflavin biosynthetic process	1.91E-03
39	GO:0009247: glycolipid biosynthetic process	1.91E-03
40	GO:0006450: regulation of translational fidelity	1.91E-03
41	GO:0006733: oxidoreduction coenzyme metabolic process	1.91E-03
42	GO:0006184: obsolete GTP catabolic process	2.01E-03
43	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.40E-03
44	GO:0010267: production of ta-siRNAs involved in RNA interference	2.40E-03
45	GO:0009627: systemic acquired resistance	2.71E-03
46	GO:0006782: protoporphyrinogen IX biosynthetic process	2.76E-03
47	GO:0009117: nucleotide metabolic process	2.76E-03
48	GO:0019375: galactolipid biosynthetic process	2.76E-03
49	GO:0045038: protein import into chloroplast thylakoid membrane	2.76E-03
50	GO:0010214: seed coat development	2.76E-03
51	GO:0042026: protein refolding	2.76E-03
52	GO:0019748: secondary metabolic process	3.78E-03
53	GO:0010468: regulation of gene expression	3.78E-03
54	GO:0010315: auxin efflux	3.78E-03
55	GO:0006749: glutathione metabolic process	4.89E-03
56	GO:0031347: regulation of defense response	4.89E-03
57	GO:0009902: chloroplast relocation	4.98E-03
58	GO:0006508: proteolysis	5.17E-03
59	GO:0034660: ncRNA metabolic process	6.09E-03
60	GO:0019538: protein metabolic process	6.09E-03
61	GO:0009106: lipoate metabolic process	6.09E-03
62	GO:0032880: regulation of protein localization	6.09E-03
63	GO:0006766: vitamin metabolic process	6.09E-03
64	GO:0009108: coenzyme biosynthetic process	6.09E-03
65	GO:0006189: 'de novo' IMP biosynthetic process	6.09E-03
66	GO:0010206: photosystem II repair	6.09E-03
67	GO:0009073: aromatic amino acid family biosynthetic process	6.39E-03
68	GO:0019344: cysteine biosynthetic process	6.91E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.29E-03
70	GO:0043039: tRNA aminoacylation	7.39E-03
71	GO:0051604: protein maturation	7.39E-03
72	GO:0016226: iron-sulfur cluster assembly	8.59E-03
73	GO:0045087: innate immune response	8.79E-03
74	GO:0001666: response to hypoxia	8.79E-03
75	GO:0000023: maltose metabolic process	9.83E-03
76	GO:0000302: response to reactive oxygen species	1.02E-02
77	GO:0009407: toxin catabolic process	1.02E-02
78	GO:0006418: tRNA aminoacylation for protein translation	1.05E-02
79	GO:0045454: cell redox homeostasis	1.20E-02
80	GO:0006200: obsolete ATP catabolic process	1.65E-02
81	GO:0008033: tRNA processing	1.69E-02
82	GO:0006636: unsaturated fatty acid biosynthetic process	1.88E-02
83	GO:0010207: photosystem II assembly	2.01E-02
84	GO:0042545: cell wall modification	2.07E-02
85	GO:0030154: cell differentiation	2.27E-02
86	GO:0009657: plastid organization	2.27E-02
87	GO:0019684: photosynthesis, light reaction	2.27E-02
88	GO:0044237: cellular metabolic process	2.40E-02
89	GO:0006396: RNA processing	2.40E-02
90	GO:0008219: cell death	2.48E-02
91	GO:0044267: cellular protein metabolic process	2.48E-02
92	GO:0016036: cellular response to phosphate starvation	2.48E-02
93	GO:0010103: stomatal complex morphogenesis	2.69E-02
94	GO:0006352: DNA-templated transcription, initiation	2.69E-02
95	GO:0009416: response to light stimulus	2.84E-02
96	GO:0035304: regulation of protein dephosphorylation	2.91E-02
97	GO:0019252: starch biosynthetic process	2.95E-02
98	GO:0009409: response to cold	3.04E-02
99	GO:0009695: jasmonic acid biosynthetic process	3.14E-02
100	GO:0006869: lipid transport	3.14E-02
101	GO:0051258: protein polymerization	3.14E-02
102	GO:0007017: microtubule-based process	3.61E-02
103	GO:0009853: photorespiration	3.86E-02
104	GO:0006626: protein targeting to mitochondrion	4.11E-02
105	GO:0030163: protein catabolic process	4.36E-02
106	GO:0009826: unidimensional cell growth	4.62E-02
107	GO:0006662: glycerol ether metabolic process	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
2	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
6	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
7	GO:0003919: FMN adenylyltransferase activity	0.00E+00
8	GO:0004252: serine-type endopeptidase activity	1.10E-04
9	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.87E-04
10	GO:0004362: glutathione-disulfide reductase activity	4.90E-04
11	GO:0008146: sulfotransferase activity	4.90E-04
12	GO:0050377: UDP-glucose 4,6-dehydratase activity	4.90E-04
13	GO:0004823: leucine-tRNA ligase activity	4.90E-04
14	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.90E-04
15	GO:0010280: UDP-L-rhamnose synthase activity	4.90E-04
16	GO:0046914: transition metal ion binding	8.22E-04
17	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.14E-03
18	GO:0047134: protein-disulfide reductase activity	1.14E-03
19	GO:0004826: phenylalanine-tRNA ligase activity	1.14E-03
20	GO:0004853: uroporphyrinogen decarboxylase activity	1.14E-03
21	GO:0051082: unfolded protein binding	1.74E-03
22	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.91E-03
23	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	1.91E-03
24	GO:0000774: adenyl-nucleotide exchange factor activity	1.91E-03
25	GO:0070569: uridylyltransferase activity	2.76E-03
26	GO:0004765: shikimate kinase activity	2.76E-03
27	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.76E-03
28	GO:0031072: heat shock protein binding	3.38E-03
29	GO:0008565: protein transporter activity	3.38E-03
30	GO:0016987: sigma factor activity	3.78E-03
31	GO:0008173: RNA methyltransferase activity	4.89E-03
32	GO:0004525: ribonuclease III activity	6.09E-03
33	GO:0008236: serine-type peptidase activity	6.91E-03
34	GO:0043022: ribosome binding	7.39E-03
35	GO:0051087: chaperone binding	7.39E-03
36	GO:0008266: poly(U) RNA binding	8.79E-03
37	GO:0000049: tRNA binding	1.02E-02
38	GO:0005525: GTP binding	1.13E-02
39	GO:0003924: GTPase activity	1.18E-02
40	GO:0004812: aminoacyl-tRNA ligase activity	1.18E-02
41	GO:0003690: double-stranded DNA binding	1.34E-02
42	GO:0005524: ATP binding	1.40E-02
43	GO:0000287: magnesium ion binding	1.49E-02
44	GO:0008233: peptidase activity	1.51E-02
45	GO:0016831: carboxy-lyase activity	2.07E-02
46	GO:0005216: ion channel activity	2.07E-02
47	GO:0005507: copper ion binding	2.19E-02
48	GO:0015035: protein disulfide oxidoreductase activity	2.20E-02
49	GO:0005200: structural constituent of cytoskeleton	2.69E-02
50	GO:0016887: ATPase activity	2.72E-02
51	GO:0004222: metalloendopeptidase activity	3.61E-02
52	GO:0000166: nucleotide binding	3.61E-02
53	GO:0050662: coenzyme binding	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	1.45E-17
4	GO:0009532: plastid stroma	1.05E-07
5	GO:0009941: chloroplast envelope	1.29E-07
6	GO:0009570: chloroplast stroma	1.71E-07
7	GO:0009535: chloroplast thylakoid membrane	9.86E-07
8	GO:0009840: chloroplastic endopeptidase Clp complex	1.24E-04
9	GO:0009579: thylakoid	1.72E-04
10	GO:0009536: plastid	2.97E-04
11	GO:0009526: plastid envelope	4.90E-04
12	GO:0005960: glycine cleavage complex	4.90E-04
13	GO:0009533: chloroplast stromal thylakoid	1.14E-03
14	GO:0009534: chloroplast thylakoid	2.10E-03
15	GO:0005739: mitochondrion	2.12E-03
16	GO:0009706: chloroplast inner membrane	4.15E-03
17	GO:0019898: extrinsic component of membrane	4.89E-03
18	GO:0005759: mitochondrial matrix	4.98E-03
19	GO:0009654: photosystem II oxygen evolving complex	6.09E-03
20	GO:0010319: stromule	8.01E-03
21	GO:0009295: nucleoid	1.34E-02
22	GO:0043234: protein complex	3.37E-02
23	GO:0009523: photosystem II	4.62E-02