| Rank | GO Term | Adjusted P value |
|---|
| 1 | GO:0043137: DNA replication, removal of RNA primer | 0.00E+00 |
| 2 | GO:0006342: chromatin silencing | 8.29E-07 |
| 3 | GO:0006260: DNA replication | 4.52E-05 |
| 4 | GO:0007049: cell cycle | 5.74E-05 |
| 5 | GO:0051567: histone H3-K9 methylation | 1.27E-04 |
| 6 | GO:0051028: mRNA transport | 1.43E-04 |
| 7 | GO:0045292: mRNA cis splicing, via spliceosome | 1.43E-04 |
| 8 | GO:0048574: long-day photoperiodism, flowering | 1.43E-04 |
| 9 | GO:0010425: DNA methylation on cytosine within a CNG sequence | 1.43E-04 |
| 10 | GO:0006306: DNA methylation | 1.53E-04 |
| 11 | GO:0019915: lipid storage | 1.67E-04 |
| 12 | GO:0010389: regulation of G2/M transition of mitotic cell cycle | 2.04E-04 |
| 13 | GO:0051301: cell division | 2.16E-04 |
| 14 | GO:0010162: seed dormancy process | 2.88E-04 |
| 15 | GO:0050826: response to freezing | 3.36E-04 |
| 16 | GO:0010069: zygote asymmetric cytokinesis in embryo sac | 3.52E-04 |
| 17 | GO:0009956: radial pattern formation | 3.52E-04 |
| 18 | GO:0009755: hormone-mediated signaling pathway | 3.52E-04 |
| 19 | GO:0045814: negative regulation of gene expression, epigenetic | 3.52E-04 |
| 20 | GO:0006396: RNA processing | 4.63E-04 |
| 21 | GO:0010182: sugar mediated signaling pathway | 5.63E-04 |
| 22 | GO:0009909: regulation of flower development | 5.79E-04 |
| 23 | GO:0009957: epidermal cell fate specification | 6.05E-04 |
| 24 | GO:0001558: regulation of cell growth | 6.05E-04 |
| 25 | GO:0006471: protein ADP-ribosylation | 6.05E-04 |
| 26 | GO:0009845: seed germination | 7.72E-04 |
| 27 | GO:0008356: asymmetric cell division | 8.95E-04 |
| 28 | GO:0090116: C-5 methylation of cytosine | 8.95E-04 |
| 29 | GO:0031053: primary miRNA processing | 8.95E-04 |
| 30 | GO:0009933: meristem structural organization | 9.34E-04 |
| 31 | GO:0000226: microtubule cytoskeleton organization | 1.02E-03 |
| 32 | GO:0006265: DNA topological change | 1.22E-03 |
| 33 | GO:0032875: regulation of DNA endoreduplication | 1.22E-03 |
| 34 | GO:0010087: phloem or xylem histogenesis | 1.57E-03 |
| 35 | GO:0000911: cytokinesis by cell plate formation | 1.73E-03 |
| 36 | GO:0006366: transcription from RNA polymerase II promoter | 1.94E-03 |
| 37 | GO:0055072: iron ion homeostasis | 1.94E-03 |
| 38 | GO:0009934: regulation of meristem structural organization | 1.94E-03 |
| 39 | GO:0009640: photomorphogenesis | 1.96E-03 |
| 40 | GO:0010074: maintenance of meristem identity | 2.32E-03 |
| 41 | GO:0016572: histone phosphorylation | 2.73E-03 |
| 42 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 2.73E-03 |
| 43 | GO:0009451: RNA modification | 3.19E-03 |
| 44 | GO:0006259: DNA metabolic process | 3.68E-03 |
| 45 | GO:0048453: sepal formation | 3.68E-03 |
| 46 | GO:0010048: vernalization response | 3.68E-03 |
| 47 | GO:0006284: base-excision repair | 3.68E-03 |
| 48 | GO:0016070: RNA metabolic process | 3.68E-03 |
| 49 | GO:0006974: cellular response to DNA damage stimulus | 4.18E-03 |
| 50 | GO:0048451: petal formation | 4.18E-03 |
| 51 | GO:0001522: pseudouridine synthesis | 4.70E-03 |
| 52 | GO:0016571: histone methylation | 4.70E-03 |
| 53 | GO:0010332: response to gamma radiation | 4.70E-03 |
| 54 | GO:0048316: seed development | 5.23E-03 |
| 55 | GO:0006406: mRNA export from nucleus | 5.23E-03 |
| 56 | GO:0006289: nucleotide-excision repair | 5.23E-03 |
| 57 | GO:0009294: DNA mediated transformation | 5.80E-03 |
| 58 | GO:0006446: regulation of translational initiation | 5.80E-03 |
| 59 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 5.80E-03 |
| 60 | GO:0001731: formation of translation preinitiation complex | 6.38E-03 |
| 61 | GO:0006310: DNA recombination | 7.62E-03 |
| 62 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 8.26E-03 |
| 63 | GO:0016567: protein ubiquitination | 9.54E-03 |
| 64 | GO:0006281: DNA repair | 9.54E-03 |
| 65 | GO:0006888: ER to Golgi vesicle-mediated transport | 9.61E-03 |
| 66 | GO:0009553: embryo sac development | 9.61E-03 |
| 67 | GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation | 1.18E-02 |
| 68 | GO:0031047: gene silencing by RNA | 1.18E-02 |
| 69 | GO:0006275: regulation of DNA replication | 1.25E-02 |
| 70 | GO:0006270: DNA replication initiation | 1.33E-02 |
| 71 | GO:0006397: mRNA processing | 1.49E-02 |
| 72 | GO:0016579: protein deubiquitination | 1.49E-02 |
| 73 | GO:0009086: methionine biosynthetic process | 1.57E-02 |
| 74 | GO:0048366: leaf development | 1.57E-02 |
| 75 | GO:0051726: regulation of cell cycle | 1.65E-02 |
| 76 | GO:0009793: embryo development ending in seed dormancy | 2.10E-02 |
| 77 | GO:0000398: mRNA splicing, via spliceosome | 2.38E-02 |
| 78 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.68E-02 |
| 79 | GO:0045893: positive regulation of transcription, DNA-templated | 3.65E-02 |
| 80 | GO:0006413: translational initiation | 4.48E-02 |