co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G470048

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0030261: chromosome condensation	0.00E+00
3	GO:0032465: regulation of cytokinesis	0.00E+00
4	GO:0010425: DNA methylation on cytosine within a CNG sequence	0.00E+00
5	GO:0007049: cell cycle	2.71E-09
6	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.23E-06
7	GO:0043987: histone H3-S10 phosphorylation	2.23E-06
8	GO:0045814: negative regulation of gene expression, epigenetic	2.23E-06
9	GO:0016572: histone phosphorylation	2.59E-06
10	GO:0090116: C-5 methylation of cytosine	1.93E-05
11	GO:0051301: cell division	3.74E-05
12	GO:0006310: DNA recombination	3.79E-05
13	GO:0006342: chromatin silencing	1.69E-04
14	GO:0007059: chromosome segregation	2.33E-04
15	GO:0010026: trichome differentiation	2.33E-04
16	GO:0031507: heterochromatin assembly	2.33E-04
17	GO:0009956: radial pattern formation	5.56E-04
18	GO:0009755: hormone-mediated signaling pathway	5.56E-04
19	GO:0009294: DNA mediated transformation	5.70E-04
20	GO:0009966: regulation of signal transduction	8.64E-04
21	GO:0022904: respiratory electron transport chain	9.48E-04
22	GO:0006396: RNA processing	1.11E-03
23	GO:0008356: asymmetric cell division	1.40E-03
24	GO:0006260: DNA replication	1.45E-03
25	GO:0009933: meristem structural organization	1.79E-03
26	GO:0006265: DNA topological change	1.88E-03
27	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.88E-03
28	GO:0032875: regulation of DNA endoreduplication	1.88E-03
29	GO:0010087: phloem or xylem histogenesis	2.40E-03
30	GO:0051276: chromosome organization	2.40E-03
31	GO:0048366: leaf development	2.44E-03
32	GO:0006281: DNA repair	2.91E-03
33	GO:0010583: response to cyclopentenone	2.97E-03
34	GO:0055072: iron ion homeostasis	2.97E-03
35	GO:0009934: regulation of meristem structural organization	2.97E-03
36	GO:0051567: histone H3-K9 methylation	3.47E-03
37	GO:0010074: maintenance of meristem identity	3.61E-03
38	GO:0006306: DNA methylation	3.94E-03
39	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.29E-03
40	GO:0009451: RNA modification	4.99E-03
41	GO:0007018: microtubule-based movement	5.53E-03
42	GO:0006259: DNA metabolic process	5.73E-03
43	GO:0010048: vernalization response	5.73E-03
44	GO:0006284: base-excision repair	5.73E-03
45	GO:0006974: cellular response to DNA damage stimulus	6.52E-03
46	GO:0051225: spindle assembly	6.52E-03
47	GO:0019915: lipid storage	6.52E-03
48	GO:0001522: pseudouridine synthesis	7.35E-03
49	GO:0016571: histone methylation	7.35E-03
50	GO:0010389: regulation of G2/M transition of mitotic cell cycle	7.35E-03
51	GO:0032508: DNA duplex unwinding	7.35E-03
52	GO:0006289: nucleotide-excision repair	8.20E-03
53	GO:0006406: mRNA export from nucleus	8.20E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	9.09E-03
55	GO:0010162: seed dormancy process	9.09E-03
56	GO:0050826: response to freezing	1.00E-02
57	GO:0007062: sister chromatid cohesion	1.00E-02
58	GO:0000724: double-strand break repair via homologous recombination	1.10E-02
59	GO:0044267: cellular protein metabolic process	1.19E-02
60	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.30E-02
61	GO:0010182: sugar mediated signaling pathway	1.40E-02
62	GO:0000278: mitotic cell cycle	1.51E-02
63	GO:0009845: seed germination	1.73E-02
64	GO:0006334: nucleosome assembly	1.77E-02
65	GO:0016567: protein ubiquitination	1.82E-02
66	GO:0000226: microtubule cytoskeleton organization	2.09E-02
67	GO:0006270: DNA replication initiation	2.09E-02
68	GO:0006468: protein phosphorylation	2.32E-02
69	GO:0006397: mRNA processing	2.35E-02
70	GO:0016579: protein deubiquitination	2.35E-02
71	GO:0051726: regulation of cell cycle	2.61E-02
72	GO:0000911: cytokinesis by cell plate formation	3.02E-02
73	GO:0009640: photomorphogenesis	3.31E-02
74	GO:0008283: cell proliferation	4.08E-02
75	GO:0010228: vegetative to reproductive phase transition of meristem	4.24E-02
76	GO:0032259: methylation	4.81E-02
77	GO:0007275: multicellular organism development	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008409: 5'-3' exonuclease activity	0.00E+00
2	GO:0035175: histone kinase activity (H3-S10 specific)	2.23E-06
3	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.93E-05
4	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.33E-04
5	GO:0017108: 5'-flap endonuclease activity	2.33E-04
6	GO:0003916: DNA topoisomerase activity	2.33E-04
7	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	5.56E-04
8	GO:0070628: proteasome binding	9.48E-04
9	GO:0008017: microtubule binding	1.24E-03
10	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.40E-03
11	GO:0003843: 1,3-beta-D-glucan synthase activity	1.88E-03
12	GO:0043130: ubiquitin binding	3.61E-03
13	GO:0009982: pseudouridine synthase activity	4.99E-03
14	GO:0003777: microtubule motor activity	5.53E-03
15	GO:0004518: nuclease activity	5.73E-03
16	GO:0003678: DNA helicase activity	5.73E-03
17	GO:0003684: damaged DNA binding	5.73E-03
18	GO:0004519: endonuclease activity	7.35E-03
19	GO:0004527: exonuclease activity	9.09E-03
20	GO:0019901: protein kinase binding	1.00E-02
21	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.00E-02
22	GO:0005524: ATP binding	1.29E-02
23	GO:0008168: methyltransferase activity	1.30E-02
24	GO:0000166: nucleotide binding	1.71E-02
25	GO:0004672: protein kinase activity	2.23E-02
26	GO:0016772: transferase activity, transferring phosphorus-containing groups	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0033186: CAF-1 complex	0.00E+00
3	GO:0000775: chromosome, centromeric region	9.48E-04
4	GO:0005819: spindle	1.22E-03
5	GO:0000148: 1,3-beta-D-glucan synthase complex	1.88E-03
6	GO:0005634: nucleus	2.10E-03
7	GO:0005875: microtubule associated complex	2.63E-03
8	GO:0016604: nuclear body	3.61E-03
9	GO:0005694: chromosome	3.68E-03
10	GO:0042555: MCM complex	4.29E-03
11	GO:0005871: kinesin complex	5.24E-03
12	GO:0005654: nucleoplasm	1.19E-02
13	GO:0031966: mitochondrial membrane	1.19E-02
14	GO:0019013: viral nucleocapsid	1.40E-02
15	GO:0005874: microtubule	1.40E-02
16	GO:0005635: nuclear envelope	1.73E-02
17	GO:0045271: respiratory chain complex I	3.76E-02
18	GO:0005743: mitochondrial inner membrane	4.56E-02