co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G451224

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035436: triose phosphate transmembrane transport	0.00E+00
2	GO:0015714: phosphoenolpyruvate transport	0.00E+00
3	GO:0030243: cellulose metabolic process	0.00E+00
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
5	GO:0055070: copper ion homeostasis	0.00E+00
6	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
7	GO:0042550: photosystem I stabilization	0.00E+00
8	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
9	GO:0042221: response to chemical	0.00E+00
10	GO:0042549: photosystem II stabilization	0.00E+00
11	GO:0015979: photosynthesis	9.28E-29
12	GO:0010207: photosystem II assembly	3.59E-12
13	GO:0009773: photosynthetic electron transport in photosystem I	7.24E-11
14	GO:0043085: positive regulation of catalytic activity	1.67E-09
15	GO:0006098: pentose-phosphate shunt	2.11E-09
16	GO:0015995: chlorophyll biosynthetic process	2.69E-08
17	GO:0016117: carotenoid biosynthetic process	7.32E-08
18	GO:0009765: photosynthesis, light harvesting	6.90E-07
19	GO:0009772: photosynthetic electron transport in photosystem II	9.73E-07
20	GO:0009637: response to blue light	2.30E-06
21	GO:0010114: response to red light	3.40E-06
22	GO:0010218: response to far red light	4.88E-06
23	GO:0018298: protein-chromophore linkage	5.49E-06
24	GO:0006364: rRNA processing	5.69E-06
25	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.96E-06
26	GO:0010103: stomatal complex morphogenesis	7.15E-06
27	GO:0035304: regulation of protein dephosphorylation	9.17E-06
28	GO:0009902: chloroplast relocation	2.64E-05
29	GO:0009595: detection of biotic stimulus	5.69E-05
30	GO:0019761: glucosinolate biosynthetic process	6.00E-05
31	GO:0010027: thylakoid membrane organization	7.79E-05
32	GO:0006636: unsaturated fatty acid biosynthetic process	7.97E-05
33	GO:0019252: starch biosynthetic process	8.50E-05
34	GO:0009409: response to cold	8.54E-05
35	GO:0000023: maltose metabolic process	1.02E-04
36	GO:0070838: divalent metal ion transport	1.03E-04
37	GO:0043900: regulation of multi-organism process	1.03E-04
38	GO:0019684: photosynthesis, light reaction	1.23E-04
39	GO:0009657: plastid organization	1.23E-04
40	GO:0042742: defense response to bacterium	1.29E-04
41	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.40E-04
42	GO:0009108: coenzyme biosynthetic process	2.42E-04
43	GO:0010206: photosystem II repair	2.42E-04
44	GO:0009106: lipoate metabolic process	2.42E-04
45	GO:0030003: cellular cation homeostasis	2.42E-04
46	GO:0006766: vitamin metabolic process	2.42E-04
47	GO:0015986: ATP synthesis coupled proton transport	2.49E-04
48	GO:0010310: regulation of hydrogen peroxide metabolic process	3.35E-04
49	GO:0019676: ammonia assimilation cycle	4.39E-04
50	GO:0009072: aromatic amino acid family metabolic process	4.41E-04
51	GO:0019344: cysteine biosynthetic process	6.74E-04
52	GO:0009697: salicylic acid biosynthetic process	6.98E-04
53	GO:0006814: sodium ion transport	6.98E-04
54	GO:0016556: mRNA modification	6.98E-04
55	GO:0006546: glycine catabolic process	8.52E-04
56	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.52E-04
57	GO:0006875: cellular metal ion homeostasis	1.03E-03
58	GO:0080167: response to karrikin	1.16E-03
59	GO:0019760: glucosinolate metabolic process	1.73E-03
60	GO:0009624: response to nematode	1.73E-03
61	GO:0006733: oxidoreduction coenzyme metabolic process	1.73E-03
62	GO:0009966: regulation of signal transduction	2.08E-03
63	GO:0006612: protein targeting to membrane	2.32E-03
64	GO:0010200: response to chitin	2.32E-03
65	GO:0010196: nonphotochemical quenching	2.49E-03
66	GO:0050821: protein stabilization	2.49E-03
67	GO:0016485: protein processing	2.49E-03
68	GO:0019216: regulation of lipid metabolic process	2.49E-03
69	GO:0009117: nucleotide metabolic process	2.49E-03
70	GO:0045037: protein import into chloroplast stroma	2.49E-03
71	GO:0046777: protein autophosphorylation	2.59E-03
72	GO:0010363: regulation of plant-type hypersensitive response	2.59E-03
73	GO:0009867: jasmonic acid mediated signaling pathway	2.89E-03
74	GO:0031348: negative regulation of defense response	2.89E-03
75	GO:0009695: jasmonic acid biosynthetic process	2.89E-03
76	GO:0006796: phosphate-containing compound metabolic process	3.39E-03
77	GO:0000096: sulfur amino acid metabolic process	3.39E-03
78	GO:0034755: iron ion transmembrane transport	3.39E-03
79	GO:0019748: secondary metabolic process	3.39E-03
80	GO:0000165: MAPK cascade	4.27E-03
81	GO:0000413: protein peptidyl-prolyl isomerization	4.27E-03
82	GO:0046688: response to copper ion	4.40E-03
83	GO:0017148: negative regulation of translation	4.40E-03
84	GO:0006568: tryptophan metabolic process	4.40E-03
85	GO:0034660: ncRNA metabolic process	5.46E-03
86	GO:0010205: photoinhibition	5.46E-03
87	GO:0009411: response to UV	5.46E-03
88	GO:0005985: sucrose metabolic process	6.63E-03
89	GO:0015977: carbon fixation	7.88E-03
90	GO:0000162: tryptophan biosynthetic process	7.88E-03
91	GO:0009658: chloroplast organization	8.96E-03
92	GO:0009832: plant-type cell wall biogenesis	9.20E-03
93	GO:0006006: glucose metabolic process	1.06E-02
94	GO:0006754: ATP biosynthetic process	1.06E-02
95	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.20E-02
96	GO:0022900: electron transport chain	1.34E-02
97	GO:0009767: photosynthetic electron transport chain	1.52E-02
98	GO:0031408: oxylipin biosynthetic process	1.52E-02
99	GO:0042793: transcription from plastid promoter	1.52E-02
100	GO:0009750: response to fructose	1.86E-02
101	GO:0016049: cell growth	1.86E-02
102	GO:0006833: water transport	1.86E-02
103	GO:0015992: proton transport	2.04E-02
104	GO:0009749: response to glucose	2.04E-02
105	GO:0016126: sterol biosynthetic process	2.04E-02
106	GO:0050832: defense response to fungus	2.06E-02
107	GO:0010155: regulation of proton transport	2.22E-02
108	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.22E-02
109	GO:0009817: defense response to fungus, incompatible interaction	2.81E-02
110	GO:0009853: photorespiration	3.45E-02
111	GO:0009735: response to cytokinin	4.14E-02
112	GO:0006662: glycerol ether metabolic process	4.38E-02
113	GO:0045454: cell redox homeostasis	4.65E-02
114	GO:0006096: glycolytic process	4.79E-02
115	GO:0006811: ion transport	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
4	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
5	GO:0010242: oxygen evolving activity	0.00E+00
6	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
7	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
8	GO:0004802: transketolase activity	0.00E+00
9	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
12	GO:0016168: chlorophyll binding	2.10E-09
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.77E-05
14	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.53E-05
15	GO:0015140: malate transmembrane transporter activity	4.39E-04
16	GO:0004750: ribulose-phosphate 3-epimerase activity	4.39E-04
17	GO:0008974: phosphoribulokinase activity	4.39E-04
18	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	4.39E-04
19	GO:0004618: phosphoglycerate kinase activity	4.39E-04
20	GO:0015088: copper uptake transmembrane transporter activity	4.39E-04
21	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.03E-03
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.03E-03
23	GO:0004332: fructose-bisphosphate aldolase activity	2.49E-03
24	GO:0016984: ribulose-bisphosphate carboxylase activity	2.49E-03
25	GO:0005215: transporter activity	2.62E-03
26	GO:0051537: 2 iron, 2 sulfur cluster binding	2.89E-03
27	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	3.39E-03
28	GO:0005381: iron ion transmembrane transporter activity	3.39E-03
29	GO:0004834: tryptophan synthase activity	4.40E-03
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.04E-03
31	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.46E-03
32	GO:0004427: inorganic diphosphatase activity	7.88E-03
33	GO:0042578: phosphoric ester hydrolase activity	7.88E-03
34	GO:0008266: poly(U) RNA binding	7.88E-03
35	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.68E-02
36	GO:0004713: protein tyrosine kinase activity	1.86E-02
37	GO:0015035: protein disulfide oxidoreductase activity	1.88E-02
38	GO:0008080: N-acetyltransferase activity	2.04E-02
39	GO:0051536: iron-sulfur cluster binding	2.15E-02
40	GO:0005509: calcium ion binding	2.46E-02
41	GO:0009055: electron carrier activity	3.01E-02
42	GO:0015078: hydrogen ion transmembrane transporter activity	3.02E-02
43	GO:0004222: metalloendopeptidase activity	3.23E-02
44	GO:0016597: amino acid binding	3.45E-02
45	GO:0051539: 4 iron, 4 sulfur cluster binding	3.91E-02
46	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0030093: chloroplast photosystem I	0.00E+00
2	GO:0009279: cell outer membrane	0.00E+00
3	GO:0009579: thylakoid	3.27E-33
4	GO:0009535: chloroplast thylakoid membrane	8.13E-32
5	GO:0009507: chloroplast	2.18E-27
6	GO:0009941: chloroplast envelope	5.17E-21
7	GO:0009522: photosystem I	4.80E-19
8	GO:0009523: photosystem II	4.13E-15
9	GO:0009543: chloroplast thylakoid lumen	1.63E-14
10	GO:0031977: thylakoid lumen	2.07E-12
11	GO:0009534: chloroplast thylakoid	2.31E-11
12	GO:0010287: plastoglobule	2.31E-11
13	GO:0009538: photosystem I reaction center	6.58E-10
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.30E-08
15	GO:0019898: extrinsic component of membrane	1.30E-08
16	GO:0009654: photosystem II oxygen evolving complex	3.37E-08
17	GO:0009570: chloroplast stroma	4.42E-07
18	GO:0010319: stromule	3.40E-06
19	GO:0016020: membrane	2.21E-05
20	GO:0009508: plastid chromosome	1.03E-04
21	GO:0048046: apoplast	1.31E-04
22	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.39E-04
23	GO:0009295: nucleoid	8.52E-04
24	GO:0042651: thylakoid membrane	1.21E-03
25	GO:0009706: chloroplast inner membrane	3.54E-03
26	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	5.46E-03