co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G445057

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048564: photosystem I assembly	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0043953: protein transport by the Tat complex	0.00E+00
4	GO:0010239: chloroplast mRNA processing	0.00E+00
5	GO:0046506: sulfolipid biosynthetic process	0.00E+00
6	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
7	GO:0042780: tRNA 3'-end processing	0.00E+00
8	GO:1900865: chloroplast RNA modification	0.00E+00
9	GO:0043686: co-translational protein modification	0.00E+00
10	GO:0009658: chloroplast organization	9.05E-10
11	GO:0009306: protein secretion	2.69E-08
12	GO:0006364: rRNA processing	1.07E-07
13	GO:0006399: tRNA metabolic process	1.26E-05
14	GO:0010027: thylakoid membrane organization	1.50E-05
15	GO:0045036: protein targeting to chloroplast	7.95E-05
16	GO:0006782: protoporphyrinogen IX biosynthetic process	8.36E-05
17	GO:0006591: ornithine metabolic process	5.52E-04
18	GO:0009959: negative gravitropism	5.52E-04
19	GO:0010207: photosystem II assembly	6.44E-04
20	GO:0009407: toxin catabolic process	7.86E-04
21	GO:0016556: mRNA modification	9.76E-04
22	GO:0009416: response to light stimulus	1.14E-03
23	GO:0006779: porphyrin-containing compound biosynthetic process	1.19E-03
24	GO:0019252: starch biosynthetic process	1.22E-03
25	GO:1901671: positive regulation of superoxide dismutase activity	1.28E-03
26	GO:0030308: negative regulation of cell growth	1.28E-03
27	GO:0009299: mRNA transcription	1.28E-03
28	GO:0009642: response to light intensity	1.28E-03
29	GO:0005987: sucrose catabolic process	1.28E-03
30	GO:0000023: maltose metabolic process	1.65E-03
31	GO:0042793: transcription from plastid promoter	1.67E-03
32	GO:0051607: defense response to virus	1.67E-03
33	GO:0008299: isoprenoid biosynthetic process	1.93E-03
34	GO:0043067: regulation of programmed cell death	2.13E-03
35	GO:0009231: riboflavin biosynthetic process	2.13E-03
36	GO:0009247: glycolipid biosynthetic process	2.13E-03
37	GO:0019760: glucosinolate metabolic process	2.13E-03
38	GO:0051085: chaperone mediated protein folding requiring cofactor	2.13E-03
39	GO:0010731: protein glutathionylation	2.13E-03
40	GO:0016075: rRNA catabolic process	2.13E-03
41	GO:0010155: regulation of proton transport	2.84E-03
42	GO:0010267: production of ta-siRNAs involved in RNA interference	2.84E-03
43	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.84E-03
44	GO:0006598: polyamine catabolic process	3.11E-03
45	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.11E-03
46	GO:0019375: galactolipid biosynthetic process	3.11E-03
47	GO:0045038: protein import into chloroplast thylakoid membrane	3.11E-03
48	GO:0000373: Group II intron splicing	3.11E-03
49	GO:0042026: protein refolding	3.11E-03
50	GO:0071704: organic substance metabolic process	3.11E-03
51	GO:0043085: positive regulation of catalytic activity	3.18E-03
52	GO:0010468: regulation of gene expression	4.26E-03
53	GO:0006457: protein folding	4.44E-03
54	GO:0045893: positive regulation of transcription, DNA-templated	4.91E-03
55	GO:0000105: histidine biosynthetic process	5.49E-03
56	GO:0006749: glutathione metabolic process	5.49E-03
57	GO:0006783: heme biosynthetic process	5.49E-03
58	GO:0048229: gametophyte development	5.49E-03
59	GO:0009902: chloroplast relocation	5.90E-03
60	GO:0009814: defense response, incompatible interaction	6.86E-03
61	GO:0010583: response to cyclopentenone	6.86E-03
62	GO:0006189: 'de novo' IMP biosynthetic process	6.86E-03
63	GO:0034660: ncRNA metabolic process	6.86E-03
64	GO:0009735: response to cytokinin	7.00E-03
65	GO:0006662: glycerol ether metabolic process	7.58E-03
66	GO:0009637: response to blue light	8.19E-03
67	GO:0016117: carotenoid biosynthetic process	8.19E-03
68	GO:0016114: terpenoid biosynthetic process	8.32E-03
69	GO:0051604: protein maturation	8.32E-03
70	GO:0006098: pentose-phosphate shunt	9.04E-03
71	GO:0010114: response to red light	9.49E-03
72	GO:0006221: pyrimidine nucleotide biosynthetic process	9.88E-03
73	GO:0045087: innate immune response	9.88E-03
74	GO:0010218: response to far red light	1.09E-02
75	GO:0009409: response to cold	1.22E-02
76	GO:0006184: obsolete GTP catabolic process	1.27E-02
77	GO:0009723: response to ethylene	1.32E-02
78	GO:0045454: cell redox homeostasis	1.49E-02
79	GO:0015995: chlorophyll biosynthetic process	1.66E-02
80	GO:0016042: lipid catabolic process	1.71E-02
81	GO:0006655: phosphatidylglycerol biosynthetic process	1.91E-02
82	GO:0006200: obsolete ATP catabolic process	1.96E-02
83	GO:0015996: chlorophyll catabolic process	2.12E-02
84	GO:0005982: starch metabolic process	2.12E-02
85	GO:0009630: gravitropism	2.34E-02
86	GO:0015031: protein transport	2.44E-02
87	GO:0009657: plastid organization	2.56E-02
88	GO:0019684: photosynthesis, light reaction	2.56E-02
89	GO:0044267: cellular protein metabolic process	2.80E-02
90	GO:0016036: cellular response to phosphate starvation	2.80E-02
91	GO:0048825: cotyledon development	2.80E-02
92	GO:0008219: cell death	2.80E-02
93	GO:0010200: response to chitin	3.04E-02
94	GO:0009627: systemic acquired resistance	3.04E-02
95	GO:0010103: stomatal complex morphogenesis	3.04E-02
96	GO:0010363: regulation of plant-type hypersensitive response	3.29E-02
97	GO:0035304: regulation of protein dephosphorylation	3.29E-02
98	GO:0046777: protein autophosphorylation	3.29E-02
99	GO:0006869: lipid transport	3.54E-02
100	GO:0051258: protein polymerization	3.54E-02
101	GO:0007017: microtubule-based process	4.07E-02
102	GO:0009853: photorespiration	4.35E-02
103	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.36E-02
104	GO:0006626: protein targeting to mitochondrion	4.63E-02
105	GO:0006520: cellular amino acid metabolic process	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	0.00E+00
3	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
4	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
6	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
7	GO:0003919: FMN adenylyltransferase activity	0.00E+00
8	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
9	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
10	GO:0004853: uroporphyrinogen decarboxylase activity	1.05E-05
11	GO:0008565: protein transporter activity	2.27E-05
12	GO:0016817: hydrolase activity, acting on acid anhydrides	2.37E-04
13	GO:0008146: sulfotransferase activity	5.52E-04
14	GO:0033862: UMP kinase activity	5.52E-04
15	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.52E-04
16	GO:0004362: glutathione-disulfide reductase activity	5.52E-04
17	GO:0004585: ornithine carbamoyltransferase activity	5.52E-04
18	GO:0046592: polyamine oxidase activity	1.28E-03
19	GO:0005496: steroid binding	1.28E-03
20	GO:0016630: protochlorophyllide reductase activity	1.28E-03
21	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.28E-03
22	GO:0047134: protein-disulfide reductase activity	1.28E-03
23	GO:0016743: carboxyl- or carbamoyltransferase activity	2.13E-03
24	GO:0003959: NADPH dehydrogenase activity	2.13E-03
25	GO:0009041: uridylate kinase activity	2.13E-03
26	GO:0016831: carboxy-lyase activity	2.21E-03
27	GO:0051082: unfolded protein binding	2.24E-03
28	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.11E-03
29	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	3.11E-03
30	GO:0070569: uridylyltransferase activity	3.11E-03
31	GO:0000287: magnesium ion binding	4.11E-03
32	GO:0016868: intramolecular transferase activity, phosphotransferases	4.26E-03
33	GO:0005525: GTP binding	4.58E-03
34	GO:0004525: ribonuclease III activity	6.86E-03
35	GO:0043022: ribosome binding	8.32E-03
36	GO:0004575: sucrose alpha-glucosidase activity	8.32E-03
37	GO:0008047: enzyme activator activity	8.32E-03
38	GO:0008266: poly(U) RNA binding	9.88E-03
39	GO:0046914: transition metal ion binding	1.33E-02
40	GO:0015035: protein disulfide oxidoreductase activity	2.61E-02
41	GO:0005200: structural constituent of cytoskeleton	3.04E-02
42	GO:0016887: ATPase activity	3.22E-02
43	GO:0004252: serine-type endopeptidase activity	3.36E-02
44	GO:0031072: heat shock protein binding	3.54E-02
45	GO:0004222: metalloendopeptidase activity	4.07E-02
46	GO:0016597: amino acid binding	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0009513: etioplast	0.00E+00
5	GO:0009507: chloroplast	1.31E-13
6	GO:0009535: chloroplast thylakoid membrane	3.09E-09
7	GO:0009941: chloroplast envelope	5.74E-08
8	GO:0009570: chloroplast stroma	5.10E-07
9	GO:0009579: thylakoid	4.60E-05
10	GO:0009532: plastid stroma	4.72E-04
11	GO:0009509: chromoplast	5.52E-04
12	GO:0009526: plastid envelope	5.52E-04
13	GO:0044445: cytosolic part	5.52E-04
14	GO:0010319: stromule	1.27E-03
15	GO:0031351: integral component of plastid membrane	1.28E-03
16	GO:0009840: chloroplastic endopeptidase Clp complex	4.26E-03
17	GO:0019898: extrinsic component of membrane	5.49E-03
18	GO:0009654: photosystem II oxygen evolving complex	6.86E-03
19	GO:0009501: amyloplast	6.86E-03
20	GO:0031977: thylakoid lumen	1.02E-02
21	GO:0009295: nucleoid	1.51E-02
22	GO:0009534: chloroplast thylakoid	1.66E-02
23	GO:0009543: chloroplast thylakoid lumen	1.91E-02
24	GO:0019013: viral nucleocapsid	3.29E-02
25	GO:0043234: protein complex	3.80E-02
26	GO:0009706: chloroplast inner membrane	4.07E-02
27	GO:0005759: mitochondrial matrix	4.63E-02
28	GO:0048046: apoplast	4.74E-02