co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G439589

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
2	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
3	GO:0043686: co-translational protein modification	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
6	GO:0090391: granum assembly	0.00E+00
7	GO:0006779: porphyrin-containing compound biosynthetic process	6.96E-09
8	GO:0009658: chloroplast organization	5.54E-06
9	GO:0030497: fatty acid elongation	2.26E-05
10	GO:0000304: response to singlet oxygen	2.26E-05
11	GO:0009735: response to cytokinin	3.16E-05
12	GO:0045036: protein targeting to chloroplast	4.19E-05
13	GO:0006353: DNA-templated transcription, termination	5.16E-05
14	GO:0006782: protoporphyrinogen IX biosynthetic process	5.16E-05
15	GO:0010072: primary shoot apical meristem specification	9.40E-05
16	GO:0033014: tetrapyrrole biosynthetic process	2.21E-04
17	GO:0006399: tRNA metabolic process	3.06E-04
18	GO:0010207: photosystem II assembly	3.26E-04
19	GO:0006364: rRNA processing	3.83E-04
20	GO:0032543: mitochondrial translation	4.14E-04
21	GO:0006282: regulation of DNA repair	4.14E-04
22	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	4.14E-04
23	GO:0006430: lysyl-tRNA aminoacylation	4.14E-04
24	GO:0006429: leucyl-tRNA aminoacylation	4.14E-04
25	GO:0006457: protein folding	4.56E-04
26	GO:0010027: thylakoid membrane organization	5.86E-04
27	GO:0006546: glycine catabolic process	7.82E-04
28	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.07E-04
29	GO:0010380: regulation of chlorophyll biosynthetic process	9.68E-04
30	GO:1901671: positive regulation of superoxide dismutase activity	9.68E-04
31	GO:0019464: glycine decarboxylation via glycine cleavage system	9.68E-04
32	GO:0042793: transcription from plastid promoter	1.11E-03
33	GO:0015995: chlorophyll biosynthetic process	1.56E-03
34	GO:0016075: rRNA catabolic process	1.63E-03
35	GO:0006450: regulation of translational fidelity	1.63E-03
36	GO:0006733: oxidoreduction coenzyme metabolic process	1.63E-03
37	GO:0006165: nucleoside diphosphate phosphorylation	2.36E-03
38	GO:0006228: UTP biosynthetic process	2.36E-03
39	GO:0010417: glucuronoxylan biosynthetic process	2.36E-03
40	GO:0009117: nucleotide metabolic process	2.36E-03
41	GO:0045037: protein import into chloroplast stroma	2.36E-03
42	GO:0006183: GTP biosynthetic process	2.36E-03
43	GO:0009098: leucine biosynthetic process	2.36E-03
44	GO:0006241: CTP biosynthetic process	2.36E-03
45	GO:0000373: Group II intron splicing	2.36E-03
46	GO:0035304: regulation of protein dephosphorylation	2.39E-03
47	GO:0048367: shoot system development	2.66E-03
48	GO:0045893: positive regulation of transcription, DNA-templated	2.89E-03
49	GO:0019748: secondary metabolic process	3.20E-03
50	GO:0009933: meristem structural organization	3.93E-03
51	GO:0009902: chloroplast relocation	3.93E-03
52	GO:0009306: protein secretion	4.15E-03
53	GO:0009106: lipoate metabolic process	5.16E-03
54	GO:0006766: vitamin metabolic process	5.16E-03
55	GO:0009411: response to UV	5.16E-03
56	GO:0009108: coenzyme biosynthetic process	5.16E-03
57	GO:0009793: embryo development ending in seed dormancy	5.18E-03
58	GO:0019344: cysteine biosynthetic process	5.44E-03
59	GO:0009082: branched-chain amino acid biosynthetic process	6.26E-03
60	GO:0016226: iron-sulfur cluster assembly	6.77E-03
61	GO:0009585: red, far-red light phototransduction	7.44E-03
62	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.44E-03
63	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	7.44E-03
64	GO:0006184: obsolete GTP catabolic process	7.57E-03
65	GO:0006418: tRNA aminoacylation for protein translation	8.25E-03
66	GO:0009834: plant-type secondary cell wall biogenesis	8.68E-03
67	GO:0006414: translational elongation	9.33E-03
68	GO:0006814: sodium ion transport	1.00E-02
69	GO:0042742: defense response to bacterium	1.05E-02
70	GO:0045492: xylan biosynthetic process	1.14E-02
71	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.14E-02
72	GO:0048364: root development	1.37E-02
73	GO:0006655: phosphatidylglycerol biosynthetic process	1.43E-02
74	GO:0031408: oxylipin biosynthetic process	1.43E-02
75	GO:0051607: defense response to virus	1.43E-02
76	GO:0005982: starch metabolic process	1.59E-02
77	GO:0006636: unsaturated fatty acid biosynthetic process	1.59E-02
78	GO:0042545: cell wall modification	1.75E-02
79	GO:0019684: photosynthesis, light reaction	1.92E-02
80	GO:0007623: circadian rhythm	1.92E-02
81	GO:0030154: cell differentiation	1.92E-02
82	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.10E-02
83	GO:0044267: cellular protein metabolic process	2.10E-02
84	GO:0010267: production of ta-siRNAs involved in RNA interference	2.10E-02
85	GO:0009409: response to cold	2.13E-02
86	GO:0010103: stomatal complex morphogenesis	2.27E-02
87	GO:0009695: jasmonic acid biosynthetic process	2.65E-02
88	GO:0051258: protein polymerization	2.65E-02
89	GO:0008643: carbohydrate transport	2.85E-02
90	GO:0035556: intracellular signal transduction	3.05E-02
91	GO:0007017: microtubule-based process	3.05E-02
92	GO:0015979: photosynthesis	3.23E-02
93	GO:0006633: fatty acid biosynthetic process	3.23E-02
94	GO:0000160: phosphorelay signal transduction system	3.68E-02
95	GO:0009826: unidimensional cell growth	3.91E-02
96	GO:0009073: aromatic amino acid family biosynthetic process	4.13E-02
97	GO:0010114: response to red light	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0042586: peptide deformylase activity	0.00E+00
2	GO:0003989: acetyl-CoA carboxylase activity	0.00E+00
3	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
6	GO:0004853: uroporphyrinogen decarboxylase activity	6.27E-06
7	GO:0004075: biotin carboxylase activity	6.27E-06
8	GO:0004824: lysine-tRNA ligase activity	4.14E-04
9	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.14E-04
10	GO:0016851: magnesium chelatase activity	4.14E-04
11	GO:0004823: leucine-tRNA ligase activity	4.14E-04
12	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.14E-04
13	GO:0008508: bile acid:sodium symporter activity	4.14E-04
14	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.14E-04
15	GO:0004462: lactoylglutathione lyase activity	9.68E-04
16	GO:0051920: peroxiredoxin activity	9.68E-04
17	GO:0016630: protochlorophyllide reductase activity	9.68E-04
18	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.68E-04
19	GO:0016831: carboxy-lyase activity	1.49E-03
20	GO:0015020: glucuronosyltransferase activity	1.63E-03
21	GO:0080116: glucuronoxylan glucuronosyltransferase activity	1.63E-03
22	GO:0000774: adenyl-nucleotide exchange factor activity	1.63E-03
23	GO:0003959: NADPH dehydrogenase activity	1.63E-03
24	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	2.36E-03
25	GO:0070569: uridylyltransferase activity	2.36E-03
26	GO:0004765: shikimate kinase activity	2.36E-03
27	GO:0004550: nucleoside diphosphate kinase activity	2.36E-03
28	GO:0016209: antioxidant activity	2.36E-03
29	GO:0004252: serine-type endopeptidase activity	3.82E-03
30	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.16E-03
31	GO:0004525: ribonuclease III activity	5.16E-03
32	GO:0008312: 7S RNA binding	6.26E-03
33	GO:0043022: ribosome binding	6.26E-03
34	GO:0051087: chaperone binding	6.26E-03
35	GO:0003746: translation elongation factor activity	6.77E-03
36	GO:0004812: aminoacyl-tRNA ligase activity	9.33E-03
37	GO:0046914: transition metal ion binding	1.00E-02
38	GO:0008081: phosphoric diester hydrolase activity	1.59E-02
39	GO:0000156: phosphorelay response regulator activity	1.59E-02
40	GO:0005200: structural constituent of cytoskeleton	2.27E-02
41	GO:0005525: GTP binding	2.56E-02
42	GO:0031072: heat shock protein binding	2.65E-02
43	GO:0008565: protein transporter activity	2.65E-02
44	GO:0016874: ligase activity	3.25E-02
45	GO:0003924: GTPase activity	3.25E-02
46	GO:0051082: unfolded protein binding	3.45E-02
47	GO:0008233: peptidase activity	3.98E-02
48	GO:0008236: serine-type peptidase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.13E-15
2	GO:0009570: chloroplast stroma	4.15E-13
3	GO:0009941: chloroplast envelope	3.17E-12
4	GO:0009535: chloroplast thylakoid membrane	3.01E-07
5	GO:0009840: chloroplastic endopeptidase Clp complex	8.41E-07
6	GO:0009579: thylakoid	1.14E-06
7	GO:0009532: plastid stroma	3.06E-04
8	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.14E-04
9	GO:0005960: glycine cleavage complex	4.14E-04
10	GO:0009534: chloroplast thylakoid	1.56E-03
11	GO:0009706: chloroplast inner membrane	3.25E-03
12	GO:0019898: extrinsic component of membrane	4.15E-03
13	GO:0009654: photosystem II oxygen evolving complex	5.16E-03
14	GO:0048500: signal recognition particle	5.16E-03
15	GO:0010319: stromule	6.30E-03
16	GO:0031977: thylakoid lumen	6.77E-03
17	GO:0048046: apoplast	7.57E-03
18	GO:0005737: cytoplasm	9.40E-03
19	GO:0009295: nucleoid	1.14E-02
20	GO:0042651: thylakoid membrane	1.43E-02
21	GO:0019013: viral nucleocapsid	2.46E-02
22	GO:0043234: protein complex	2.85E-02
23	GO:0005759: mitochondrial matrix	3.47E-02
24	GO:0009523: photosystem II	3.91E-02
25	GO:0009536: plastid	4.79E-02