co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G428964

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0032543: mitochondrial translation	0.00E+00
3	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0006412: translation	1.17E-09
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.72E-07
7	GO:0009658: chloroplast organization	6.38E-06
8	GO:0032544: plastid translation	6.71E-06
9	GO:0042793: transcription from plastid promoter	5.98E-05
10	GO:0010027: thylakoid membrane organization	7.35E-05
11	GO:0006418: tRNA aminoacylation for protein translation	1.10E-04
12	GO:0006399: tRNA metabolic process	3.25E-04
13	GO:0009902: chloroplast relocation	4.14E-04
14	GO:0018160: peptidyl-pyrromethane cofactor linkage	4.31E-04
15	GO:0006433: prolyl-tRNA aminoacylation	4.31E-04
16	GO:0006423: cysteinyl-tRNA aminoacylation	4.31E-04
17	GO:0071722: detoxification of arsenic-containing substance	4.31E-04
18	GO:0006430: lysyl-tRNA aminoacylation	4.31E-04
19	GO:0006354: DNA-templated transcription, elongation	6.79E-04
20	GO:0006098: pentose-phosphate shunt	9.93E-04
21	GO:0045036: protein targeting to chloroplast	9.94E-04
22	GO:0044272: sulfur compound biosynthetic process	1.01E-03
23	GO:0051555: flavonol biosynthetic process	1.01E-03
24	GO:0010109: regulation of photosynthesis	1.01E-03
25	GO:0006655: phosphatidylglycerol biosynthetic process	1.18E-03
26	GO:0006450: regulation of translational fidelity	1.69E-03
27	GO:0006733: oxidoreduction coenzyme metabolic process	1.69E-03
28	GO:0006431: methionyl-tRNA aminoacylation	1.69E-03
29	GO:0043067: regulation of programmed cell death	1.69E-03
30	GO:0009247: glycolipid biosynthetic process	1.69E-03
31	GO:0006364: rRNA processing	2.37E-03
32	GO:0030259: lipid glycosylation	2.45E-03
33	GO:0019216: regulation of lipid metabolic process	2.45E-03
34	GO:0009117: nucleotide metabolic process	2.45E-03
35	GO:0019375: galactolipid biosynthetic process	2.45E-03
36	GO:0035304: regulation of protein dephosphorylation	2.53E-03
37	GO:0009695: jasmonic acid biosynthetic process	2.81E-03
38	GO:0000096: sulfur amino acid metabolic process	3.33E-03
39	GO:0009089: lysine biosynthetic process via diaminopimelate	3.33E-03
40	GO:0009813: flavonoid biosynthetic process	3.33E-03
41	GO:0019748: secondary metabolic process	3.33E-03
42	GO:0010468: regulation of gene expression	3.33E-03
43	GO:0006102: isocitrate metabolic process	4.32E-03
44	GO:0031347: regulation of defense response	4.32E-03
45	GO:0009073: aromatic amino acid family biosynthetic process	5.31E-03
46	GO:0033014: tetrapyrrole biosynthetic process	5.36E-03
47	GO:0010413: glucuronoxylan metabolic process	5.36E-03
48	GO:0034660: ncRNA metabolic process	5.36E-03
49	GO:0009106: lipoate metabolic process	5.36E-03
50	GO:0010205: photoinhibition	5.36E-03
51	GO:0032880: regulation of protein localization	5.36E-03
52	GO:0006766: vitamin metabolic process	5.36E-03
53	GO:0009108: coenzyme biosynthetic process	5.36E-03
54	GO:0016117: carotenoid biosynthetic process	5.75E-03
55	GO:0009790: embryo development	6.20E-03
56	GO:0010099: regulation of photomorphogenesis	6.51E-03
57	GO:0006633: fatty acid biosynthetic process	6.58E-03
58	GO:0016226: iron-sulfur cluster assembly	7.15E-03
59	GO:0045087: innate immune response	7.73E-03
60	GO:0009072: aromatic amino acid family metabolic process	7.73E-03
61	GO:0048481: plant ovule development	8.18E-03
62	GO:0000302: response to reactive oxygen species	9.03E-03
63	GO:0009834: plant-type secondary cell wall biogenesis	9.03E-03
64	GO:0030244: cellulose biosynthetic process	1.11E-02
65	GO:0042742: defense response to bacterium	1.15E-02
66	GO:0015995: chlorophyll biosynthetic process	1.17E-02
67	GO:0006546: glycine catabolic process	1.18E-02
68	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.18E-02
69	GO:0045492: xylan biosynthetic process	1.18E-02
70	GO:0009612: response to mechanical stimulus	1.33E-02
71	GO:0019722: calcium-mediated signaling	1.33E-02
72	GO:0031408: oxylipin biosynthetic process	1.49E-02
73	GO:0051607: defense response to virus	1.49E-02
74	GO:0048316: seed development	1.49E-02
75	GO:0010197: polar nucleus fusion	1.65E-02
76	GO:0045893: positive regulation of transcription, DNA-templated	1.92E-02
77	GO:0030154: cell differentiation	2.00E-02
78	GO:0019684: photosynthesis, light reaction	2.00E-02
79	GO:0008610: lipid biosynthetic process	2.18E-02
80	GO:0006352: DNA-templated transcription, initiation	2.37E-02
81	GO:0009627: systemic acquired resistance	2.37E-02
82	GO:0009773: photosynthetic electron transport in photosystem I	2.56E-02
83	GO:0009817: defense response to fungus, incompatible interaction	2.76E-02
84	GO:0009620: response to fungus	2.76E-02
85	GO:0009553: embryo sac development	2.76E-02
86	GO:0042254: ribosome biogenesis	3.17E-02
87	GO:0009846: pollen germination	3.39E-02
88	GO:0009735: response to cytokinin	4.06E-02
89	GO:0009220: pyrimidine ribonucleotide biosynthetic process	4.30E-02
90	GO:0006662: glycerol ether metabolic process	4.30E-02
91	GO:0019344: cysteine biosynthetic process	4.53E-02
92	GO:0045454: cell redox homeostasis	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0010285: L,L-diaminopimelate aminotransferase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0045431: flavonol synthase activity	0.00E+00
5	GO:0003735: structural constituent of ribosome	9.48E-07
6	GO:0004812: aminoacyl-tRNA ligase activity	1.38E-04
7	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.35E-04
8	GO:0019843: rRNA binding	3.66E-04
9	GO:0035250: UDP-galactosyltransferase activity	4.31E-04
10	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	4.31E-04
11	GO:0031177: phosphopantetheine binding	4.31E-04
12	GO:0008194: UDP-glycosyltransferase activity	4.31E-04
13	GO:0004817: cysteine-tRNA ligase activity	4.31E-04
14	GO:0004824: lysine-tRNA ligase activity	4.31E-04
15	GO:0004827: proline-tRNA ligase activity	4.31E-04
16	GO:0004418: hydroxymethylbilane synthase activity	4.31E-04
17	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.01E-03
18	GO:0045485: omega-6 fatty acid desaturase activity	1.01E-03
19	GO:0016760: cellulose synthase (UDP-forming) activity	1.36E-03
20	GO:0004825: methionine-tRNA ligase activity	1.69E-03
21	GO:0032549: ribonucleoside binding	1.69E-03
22	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	2.45E-03
23	GO:0004659: prenyltransferase activity	2.45E-03
24	GO:0016987: sigma factor activity	3.33E-03
25	GO:0004252: serine-type endopeptidase activity	4.10E-03
26	GO:0008173: RNA methyltransferase activity	4.32E-03
27	GO:0008266: poly(U) RNA binding	7.73E-03
28	GO:0003723: RNA binding	9.98E-03
29	GO:0016758: transferase activity, transferring hexosyl groups	1.17E-02
30	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.24E-02
31	GO:0004527: exonuclease activity	1.65E-02
32	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.75E-02
33	GO:0015035: protein disulfide oxidoreductase activity	1.83E-02
34	GO:0031072: heat shock protein binding	2.76E-02
35	GO:0016757: transferase activity, transferring glycosyl groups	3.17E-02
36	GO:0004222: metalloendopeptidase activity	3.17E-02
37	GO:0008236: serine-type peptidase activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009570: chloroplast stroma	2.58E-17
3	GO:0009507: chloroplast	1.54E-16
4	GO:0009941: chloroplast envelope	5.42E-11
5	GO:0005840: ribosome	9.67E-09
6	GO:0030529: intracellular ribonucleoprotein complex	5.43E-05
7	GO:0009534: chloroplast thylakoid	1.90E-04
8	GO:0009532: plastid stroma	3.25E-04
9	GO:0000311: plastid large ribosomal subunit	4.31E-04
10	GO:0005622: intracellular	1.18E-03
11	GO:0009535: chloroplast thylakoid membrane	2.67E-03
12	GO:0009840: chloroplastic endopeptidase Clp complex	3.33E-03
13	GO:0009536: plastid	3.73E-03
14	GO:0015934: large ribosomal subunit	6.67E-03
15	GO:0009295: nucleoid	1.18E-02
16	GO:0042651: thylakoid membrane	1.49E-02
17	GO:0009706: chloroplast inner membrane	3.17E-02
18	GO:0009579: thylakoid	3.99E-02