co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G419606

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
3	GO:1901259: chloroplast rRNA processing	0.00E+00
4	GO:0010028: xanthophyll cycle	0.00E+00
5	GO:0035436: triose phosphate transmembrane transport	0.00E+00
6	GO:0090342: regulation of cell aging	0.00E+00
7	GO:0015714: phosphoenolpyruvate transport	0.00E+00
8	GO:0032544: plastid translation	0.00E+00
9	GO:0071486: cellular response to high light intensity	0.00E+00
10	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
11	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
12	GO:0043043: peptide biosynthetic process	0.00E+00
13	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
14	GO:0042821: pyridoxal biosynthetic process	0.00E+00
15	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.94E-25
17	GO:0010027: thylakoid membrane organization	8.56E-17
18	GO:0010207: photosystem II assembly	1.48E-13
19	GO:0006098: pentose-phosphate shunt	4.43E-13
20	GO:0045036: protein targeting to chloroplast	1.22E-10
21	GO:0006412: translation	2.81E-10
22	GO:0015995: chlorophyll biosynthetic process	3.03E-10
23	GO:0006364: rRNA processing	3.30E-10
24	GO:0009902: chloroplast relocation	1.58E-09
25	GO:0015979: photosynthesis	4.81E-09
26	GO:0006655: phosphatidylglycerol biosynthetic process	1.56E-08
27	GO:0016226: iron-sulfur cluster assembly	1.71E-08
28	GO:0006636: unsaturated fatty acid biosynthetic process	2.70E-08
29	GO:0009773: photosynthetic electron transport in photosystem I	2.44E-07
30	GO:0009106: lipoate metabolic process	5.66E-07
31	GO:0006766: vitamin metabolic process	5.66E-07
32	GO:0009108: coenzyme biosynthetic process	5.66E-07
33	GO:0042793: transcription from plastid promoter	7.12E-07
34	GO:0010103: stomatal complex morphogenesis	4.79E-06
35	GO:0019748: secondary metabolic process	8.80E-06
36	GO:0000096: sulfur amino acid metabolic process	8.80E-06
37	GO:0006546: glycine catabolic process	1.06E-05
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.44E-05
39	GO:0042372: phylloquinone biosynthetic process	3.44E-05
40	GO:0043085: positive regulation of catalytic activity	4.43E-05
41	GO:0016117: carotenoid biosynthetic process	5.28E-05
42	GO:0009072: aromatic amino acid family metabolic process	9.20E-05
43	GO:0006733: oxidoreduction coenzyme metabolic process	1.15E-04
44	GO:0009658: chloroplast organization	1.37E-04
45	GO:0009695: jasmonic acid biosynthetic process	1.43E-04
46	GO:0006354: DNA-templated transcription, elongation	1.86E-04
47	GO:0019216: regulation of lipid metabolic process	2.46E-04
48	GO:0009117: nucleotide metabolic process	2.46E-04
49	GO:0045038: protein import into chloroplast thylakoid membrane	2.46E-04
50	GO:0009767: photosynthetic electron transport chain	4.10E-04
51	GO:0009772: photosynthetic electron transport in photosystem II	4.23E-04
52	GO:0009813: flavonoid biosynthetic process	4.23E-04
53	GO:0006569: tryptophan catabolic process	4.23E-04
54	GO:0009073: aromatic amino acid family biosynthetic process	4.53E-04
55	GO:0030154: cell differentiation	7.47E-04
56	GO:0034660: ncRNA metabolic process	9.26E-04
57	GO:0010206: photosystem II repair	9.26E-04
58	GO:0006434: seryl-tRNA aminoacylation	1.07E-03
59	GO:0016050: vesicle organization	1.07E-03
60	GO:0006573: valine metabolic process	1.07E-03
61	GO:0032543: mitochondrial translation	1.07E-03
62	GO:0009069: serine family amino acid metabolic process	1.07E-03
63	GO:0019253: reductive pentose-phosphate cycle	1.07E-03
64	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.07E-03
65	GO:0009443: pyridoxal 5'-phosphate salvage	1.07E-03
66	GO:0008361: regulation of cell size	1.07E-03
67	GO:0035304: regulation of protein dephosphorylation	1.22E-03
68	GO:0009684: indoleacetic acid biosynthetic process	2.03E-03
69	GO:0044272: sulfur compound biosynthetic process	2.40E-03
70	GO:0010236: plastoquinone biosynthetic process	2.40E-03
71	GO:0048653: anther development	2.40E-03
72	GO:0016556: mRNA modification	2.49E-03
73	GO:0009697: salicylic acid biosynthetic process	2.49E-03
74	GO:0009765: photosynthesis, light harvesting	3.00E-03
75	GO:0009637: response to blue light	3.51E-03
76	GO:0045893: positive regulation of transcription, DNA-templated	3.55E-03
77	GO:0019761: glucosinolate biosynthetic process	3.87E-03
78	GO:0016024: CDP-diacylglycerol biosynthetic process	4.07E-03
79	GO:0034599: cellular response to oxidative stress	4.07E-03
80	GO:0007186: G-protein coupled receptor signaling pathway	4.07E-03
81	GO:0031408: oxylipin biosynthetic process	4.25E-03
82	GO:0010114: response to red light	4.26E-03
83	GO:0010218: response to far red light	5.08E-03
84	GO:0048481: plant ovule development	5.53E-03
85	GO:0000023: maltose metabolic process	5.53E-03
86	GO:0006418: tRNA aminoacylation for protein translation	6.01E-03
87	GO:0051205: protein insertion into membrane	6.02E-03
88	GO:0009595: detection of biotic stimulus	6.02E-03
89	GO:0045037: protein import into chloroplast stroma	6.02E-03
90	GO:0006353: DNA-templated transcription, termination	6.02E-03
91	GO:0007389: pattern specification process	6.02E-03
92	GO:0009657: plastid organization	6.52E-03
93	GO:0006631: fatty acid metabolic process	6.52E-03
94	GO:0019684: photosynthesis, light reaction	6.52E-03
95	GO:0006414: translational elongation	7.05E-03
96	GO:0010155: regulation of proton transport	7.40E-03
97	GO:0018298: protein-chromophore linkage	7.40E-03
98	GO:0060416: response to growth hormone	8.22E-03
99	GO:0043900: regulation of multi-organism process	8.22E-03
100	GO:0015994: chlorophyll metabolic process	8.22E-03
101	GO:0070838: divalent metal ion transport	8.22E-03
102	GO:0006796: phosphate-containing compound metabolic process	8.22E-03
103	GO:0080167: response to karrikin	8.27E-03
104	GO:0009409: response to cold	8.28E-03
105	GO:0008652: cellular amino acid biosynthetic process	8.80E-03
106	GO:0042742: defense response to bacterium	9.33E-03
107	GO:0010224: response to UV-B	9.35E-03
108	GO:0010228: vegetative to reproductive phase transition of meristem	9.43E-03
109	GO:0009913: epidermal cell differentiation	1.07E-02
110	GO:0007005: mitochondrion organization	1.07E-02
111	GO:0009965: leaf morphogenesis	1.15E-02
112	GO:0006801: superoxide metabolic process	1.33E-02
113	GO:0009926: auxin polar transport	1.33E-02
114	GO:0030003: cellular cation homeostasis	1.33E-02
115	GO:0009704: de-etiolation	1.33E-02
116	GO:0009411: response to UV	1.33E-02
117	GO:0009814: defense response, incompatible interaction	1.33E-02
118	GO:0000413: protein peptidyl-prolyl isomerization	1.53E-02
119	GO:0006399: tRNA metabolic process	1.62E-02
120	GO:0030245: cellulose catabolic process	1.62E-02
121	GO:0010310: regulation of hydrogen peroxide metabolic process	1.62E-02
122	GO:0009735: response to cytokinin	1.81E-02
123	GO:0040007: growth	1.93E-02
124	GO:0010015: root morphogenesis	1.93E-02
125	GO:0015977: carbon fixation	1.93E-02
126	GO:0019344: cysteine biosynthetic process	2.12E-02
127	GO:0009416: response to light stimulus	2.15E-02
128	GO:0009832: plant-type cell wall biogenesis	2.26E-02
129	GO:0019252: starch biosynthetic process	2.26E-02
130	GO:0009407: toxin catabolic process	2.26E-02
131	GO:0006814: sodium ion transport	2.60E-02
132	GO:0006006: glucose metabolic process	2.60E-02
133	GO:0048527: lateral root development	2.60E-02
134	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.97E-02
135	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.97E-02
136	GO:0006974: cellular response to DNA damage stimulus	2.97E-02
137	GO:0009744: response to sucrose	3.62E-02
138	GO:0009793: embryo development ending in seed dormancy	4.00E-02
139	GO:0010075: regulation of meristem growth	4.16E-02
140	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.16E-02
141	GO:0042545: cell wall modification	4.59E-02
142	GO:0022900: electron transport chain	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0004802: transketolase activity	0.00E+00
3	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
4	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
8	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
9	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
10	GO:0005504: fatty acid binding	0.00E+00
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
12	GO:0003735: structural constituent of ribosome	9.21E-09
13	GO:0045430: chalcone isomerase activity	3.44E-05
14	GO:0016872: intramolecular lyase activity	1.15E-04
15	GO:0070402: NADPH binding	1.07E-03
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.07E-03
17	GO:0004618: phosphoglycerate kinase activity	1.07E-03
18	GO:0004828: serine-tRNA ligase activity	1.07E-03
19	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.07E-03
20	GO:0004831: tyrosine-tRNA ligase activity	1.07E-03
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.03E-03
22	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.40E-03
23	GO:0004605: phosphatidate cytidylyltransferase activity	2.40E-03
24	GO:0033897: ribonuclease T2 activity	4.07E-03
25	GO:0003746: translation elongation factor activity	4.66E-03
26	GO:0004659: prenyltransferase activity	6.02E-03
27	GO:0004765: shikimate kinase activity	6.02E-03
28	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.02E-03
29	GO:0016984: ribulose-bisphosphate carboxylase activity	6.02E-03
30	GO:0004812: aminoacyl-tRNA ligase activity	7.05E-03
31	GO:0016168: chlorophyll binding	7.40E-03
32	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.22E-03
33	GO:0003723: RNA binding	9.07E-03
34	GO:0051537: 2 iron, 2 sulfur cluster binding	1.04E-02
35	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.33E-02
36	GO:0008810: cellulase activity	1.33E-02
37	GO:0004784: superoxide dismutase activity	1.62E-02
38	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.81E-02
39	GO:0004427: inorganic diphosphatase activity	1.93E-02
40	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.26E-02
41	GO:0000049: tRNA binding	2.26E-02
42	GO:0003690: double-stranded DNA binding	2.97E-02
43	GO:0009055: electron carrier activity	3.06E-02
44	GO:0005507: copper ion binding	4.20E-02
45	GO:0005216: ion channel activity	4.59E-02
46	GO:0019901: protein kinase binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.03E-48
2	GO:0009570: chloroplast stroma	3.43E-35
3	GO:0009941: chloroplast envelope	5.80E-25
4	GO:0009535: chloroplast thylakoid membrane	7.97E-21
5	GO:0009579: thylakoid	2.06E-17
6	GO:0009543: chloroplast thylakoid lumen	3.17E-12
7	GO:0005840: ribosome	4.94E-11
8	GO:0009295: nucleoid	2.59E-07
9	GO:0031977: thylakoid lumen	3.74E-07
10	GO:0009523: photosystem II	2.11E-06
11	GO:0009534: chloroplast thylakoid	2.19E-06
12	GO:0030529: intracellular ribonucleoprotein complex	3.44E-06
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.92E-05
14	GO:0009522: photosystem I	1.16E-04
15	GO:0009538: photosystem I reaction center	2.46E-04
16	GO:0005622: intracellular	2.96E-04
17	GO:0009508: plastid chromosome	4.23E-04
18	GO:0019898: extrinsic component of membrane	6.49E-04
19	GO:0009654: photosystem II oxygen evolving complex	9.26E-04
20	GO:0009528: plastid inner membrane	1.07E-03
21	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.07E-03
22	GO:0000311: plastid large ribosomal subunit	1.07E-03
23	GO:0009527: plastid outer membrane	1.07E-03
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.07E-03
25	GO:0030093: chloroplast photosystem I	1.07E-03
26	GO:0055028: cortical microtubule	4.07E-03
27	GO:0019013: viral nucleocapsid	9.35E-03
28	GO:0009532: plastid stroma	1.62E-02
29	GO:0015934: large ribosomal subunit	2.46E-02
30	GO:0010319: stromule	2.46E-02
31	GO:0015935: small ribosomal subunit	2.64E-02
32	GO:0048046: apoplast	2.98E-02
33	GO:0042651: thylakoid membrane	3.74E-02
34	GO:0010287: plastoglobule	4.30E-02