co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G394403

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
4	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
5	GO:0032543: mitochondrial translation	0.00E+00
6	GO:0010117: photoprotection	0.00E+00
7	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:1900865: chloroplast RNA modification	0.00E+00
10	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
11	GO:0043043: peptide biosynthetic process	0.00E+00
12	GO:0043686: co-translational protein modification	0.00E+00
13	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
14	GO:0042407: cristae formation	0.00E+00
15	GO:0090391: granum assembly	0.00E+00
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.68E-12
17	GO:0009658: chloroplast organization	5.12E-12
18	GO:0010027: thylakoid membrane organization	1.11E-11
19	GO:0045036: protein targeting to chloroplast	1.92E-09
20	GO:0009902: chloroplast relocation	3.31E-08
21	GO:0042793: transcription from plastid promoter	1.67E-07
22	GO:0006779: porphyrin-containing compound biosynthetic process	1.93E-06
23	GO:0006364: rRNA processing	2.33E-06
24	GO:0016226: iron-sulfur cluster assembly	4.99E-06
25	GO:0006457: protein folding	5.55E-06
26	GO:0006418: tRNA aminoacylation for protein translation	9.81E-06
27	GO:0006412: translation	2.31E-05
28	GO:0015995: chlorophyll biosynthetic process	2.60E-05
29	GO:0035304: regulation of protein dephosphorylation	4.22E-05
30	GO:0010207: photosystem II assembly	7.85E-05
31	GO:0032544: plastid translation	8.70E-05
32	GO:0006655: phosphatidylglycerol biosynthetic process	1.03E-04
33	GO:0045893: positive regulation of transcription, DNA-templated	1.17E-04
34	GO:0006399: tRNA metabolic process	1.93E-04
35	GO:0009735: response to cytokinin	2.00E-04
36	GO:0030497: fatty acid elongation	2.75E-04
37	GO:0006733: oxidoreduction coenzyme metabolic process	2.75E-04
38	GO:0010417: glucuronoxylan biosynthetic process	5.59E-04
39	GO:0009117: nucleotide metabolic process	5.59E-04
40	GO:0045037: protein import into chloroplast stroma	5.59E-04
41	GO:0006353: DNA-templated transcription, termination	5.59E-04
42	GO:0045038: protein import into chloroplast thylakoid membrane	5.59E-04
43	GO:0006782: protoporphyrinogen IX biosynthetic process	5.59E-04
44	GO:0009793: embryo development ending in seed dormancy	5.66E-04
45	GO:0006546: glycine catabolic process	7.23E-04
46	GO:0019748: secondary metabolic process	9.44E-04
47	GO:0000096: sulfur amino acid metabolic process	9.44E-04
48	GO:0010072: primary shoot apical meristem specification	9.44E-04
49	GO:0009073: aromatic amino acid family biosynthetic process	1.58E-03
50	GO:0019344: cysteine biosynthetic process	1.78E-03
51	GO:0006098: pentose-phosphate shunt	1.80E-03
52	GO:0006788: heme oxidation	1.81E-03
53	GO:0043157: response to cation stress	1.81E-03
54	GO:0006433: prolyl-tRNA aminoacylation	1.81E-03
55	GO:0006423: cysteinyl-tRNA aminoacylation	1.81E-03
56	GO:0009069: serine family amino acid metabolic process	1.81E-03
57	GO:0071722: detoxification of arsenic-containing substance	1.81E-03
58	GO:0080141: regulation of jasmonic acid biosynthetic process	1.81E-03
59	GO:0006430: lysyl-tRNA aminoacylation	1.81E-03
60	GO:0051512: positive regulation of unidimensional cell growth	1.81E-03
61	GO:0006429: leucyl-tRNA aminoacylation	1.81E-03
62	GO:0010587: miRNA catabolic process	1.81E-03
63	GO:0009968: negative regulation of signal transduction	1.81E-03
64	GO:0008361: regulation of cell size	1.81E-03
65	GO:0006434: seryl-tRNA aminoacylation	1.81E-03
66	GO:0034660: ncRNA metabolic process	2.00E-03
67	GO:0019538: protein metabolic process	2.00E-03
68	GO:0009106: lipoate metabolic process	2.00E-03
69	GO:0006766: vitamin metabolic process	2.00E-03
70	GO:0009108: coenzyme biosynthetic process	2.00E-03
71	GO:0033014: tetrapyrrole biosynthetic process	2.00E-03
72	GO:0010206: photosystem II repair	2.00E-03
73	GO:0030154: cell differentiation	2.04E-03
74	GO:0009409: response to cold	2.66E-03
75	GO:0009627: systemic acquired resistance	2.78E-03
76	GO:0010103: stomatal complex morphogenesis	2.78E-03
77	GO:0048481: plant ovule development	3.07E-03
78	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.46E-03
79	GO:0009695: jasmonic acid biosynthetic process	3.75E-03
80	GO:0048367: shoot system development	3.75E-03
81	GO:0044272: sulfur compound biosynthetic process	4.11E-03
82	GO:0019464: glycine decarboxylation via glycine cleavage system	4.11E-03
83	GO:0006432: phenylalanyl-tRNA aminoacylation	4.11E-03
84	GO:0051555: flavonol biosynthetic process	4.11E-03
85	GO:0019481: L-alanine catabolic process, by transamination	4.11E-03
86	GO:0010236: plastoquinone biosynthetic process	4.11E-03
87	GO:0010109: regulation of photosynthesis	4.11E-03
88	GO:0042372: phylloquinone biosynthetic process	4.11E-03
89	GO:0010024: phytochromobilin biosynthetic process	4.11E-03
90	GO:0048653: anther development	4.11E-03
91	GO:0010380: regulation of chlorophyll biosynthetic process	4.11E-03
92	GO:0006354: DNA-templated transcription, elongation	5.41E-03
93	GO:0016075: rRNA catabolic process	6.98E-03
94	GO:0043067: regulation of programmed cell death	6.98E-03
95	GO:0009247: glycolipid biosynthetic process	6.98E-03
96	GO:0015867: ATP transport	6.98E-03
97	GO:0000304: response to singlet oxygen	6.98E-03
98	GO:0010143: cutin biosynthetic process	6.98E-03
99	GO:0006571: tyrosine biosynthetic process	6.98E-03
100	GO:0006450: regulation of translational fidelity	6.98E-03
101	GO:0051085: chaperone mediated protein folding requiring cofactor	6.98E-03
102	GO:0006633: fatty acid biosynthetic process	8.13E-03
103	GO:0031408: oxylipin biosynthetic process	9.24E-03
104	GO:0051607: defense response to virus	9.24E-03
105	GO:0006165: nucleoside diphosphate phosphorylation	1.03E-02
106	GO:0019216: regulation of lipid metabolic process	1.03E-02
107	GO:0006790: sulfur compound metabolic process	1.03E-02
108	GO:0006228: UTP biosynthetic process	1.03E-02
109	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.03E-02
110	GO:0019375: galactolipid biosynthetic process	1.03E-02
111	GO:0006183: GTP biosynthetic process	1.03E-02
112	GO:0006401: RNA catabolic process	1.03E-02
113	GO:0009098: leucine biosynthetic process	1.03E-02
114	GO:0006241: CTP biosynthetic process	1.03E-02
115	GO:0007389: pattern specification process	1.03E-02
116	GO:0030259: lipid glycosylation	1.03E-02
117	GO:0042026: protein refolding	1.03E-02
118	GO:0006184: obsolete GTP catabolic process	1.09E-02
119	GO:0042545: cell wall modification	1.24E-02
120	GO:0006081: cellular aldehyde metabolic process	1.42E-02
121	GO:0009813: flavonoid biosynthetic process	1.42E-02
122	GO:0010468: regulation of gene expression	1.42E-02
123	GO:0019684: photosynthesis, light reaction	1.42E-02
124	GO:0001676: long-chain fatty acid metabolic process	1.42E-02
125	GO:0009089: lysine biosynthetic process via diaminopimelate	1.42E-02
126	GO:0009772: photosynthetic electron transport in photosystem II	1.42E-02
127	GO:0009416: response to light stimulus	1.60E-02
128	GO:0044267: cellular protein metabolic process	1.61E-02
129	GO:0010267: production of ta-siRNAs involved in RNA interference	1.61E-02
130	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.61E-02
131	GO:0006749: glutathione metabolic process	1.84E-02
132	GO:0031347: regulation of defense response	1.84E-02
133	GO:0007005: mitochondrion organization	1.84E-02
134	GO:0009773: photosynthetic electron transport in photosystem I	2.03E-02
135	GO:0009926: auxin polar transport	2.30E-02
136	GO:0010205: photoinhibition	2.30E-02
137	GO:0032880: regulation of protein localization	2.30E-02
138	GO:0006032: chitin catabolic process	2.30E-02
139	GO:0009411: response to UV	2.30E-02
140	GO:0006189: 'de novo' IMP biosynthetic process	2.30E-02
141	GO:0010025: wax biosynthetic process	2.30E-02
142	GO:0010228: vegetative to reproductive phase transition of meristem	2.51E-02
143	GO:0009082: branched-chain amino acid biosynthetic process	2.81E-02
144	GO:0009628: response to abiotic stimulus	2.81E-02
145	GO:0051604: protein maturation	2.81E-02
146	GO:0010099: regulation of photomorphogenesis	2.81E-02
147	GO:0043039: tRNA aminoacylation	2.81E-02
148	GO:0009965: leaf morphogenesis	3.05E-02
149	GO:0009933: meristem structural organization	3.32E-02
150	GO:0048868: pollen tube development	3.34E-02
151	GO:0009072: aromatic amino acid family metabolic process	3.34E-02
152	GO:0010154: fruit development	3.34E-02
153	GO:0009585: red, far-red light phototransduction	3.34E-02
154	GO:0040007: growth	3.34E-02
155	GO:0010015: root morphogenesis	3.34E-02
156	GO:0045087: innate immune response	3.34E-02
157	GO:0001666: response to hypoxia	3.34E-02
158	GO:0000302: response to reactive oxygen species	3.92E-02
159	GO:0009832: plant-type cell wall biogenesis	3.92E-02
160	GO:0009834: plant-type secondary cell wall biogenesis	3.92E-02
161	GO:0009407: toxin catabolic process	3.92E-02
162	GO:0010051: xylem and phloem pattern formation	3.92E-02
163	GO:0042742: defense response to bacterium	4.05E-02
164	GO:0016556: mRNA modification	4.52E-02
165	GO:0016117: carotenoid biosynthetic process	4.58E-02
166	GO:0009790: embryo development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0042285: xylosyltransferase activity	0.00E+00
3	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
4	GO:0042586: peptide deformylase activity	0.00E+00
5	GO:0003989: acetyl-CoA carboxylase activity	0.00E+00
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
7	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
8	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
9	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
10	GO:0045431: flavonol synthase activity	0.00E+00
11	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
12	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
13	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
14	GO:0005048: signal sequence binding	0.00E+00
15	GO:0010285: L,L-diaminopimelate aminotransferase activity	0.00E+00
16	GO:0046408: chlorophyll synthetase activity	0.00E+00
17	GO:0004812: aminoacyl-tRNA ligase activity	1.48E-05
18	GO:0004853: uroporphyrinogen decarboxylase activity	8.70E-05
19	GO:0004075: biotin carboxylase activity	8.70E-05
20	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.70E-05
21	GO:0000774: adenyl-nucleotide exchange factor activity	2.75E-04
22	GO:0003735: structural constituent of ribosome	4.60E-04
23	GO:0046914: transition metal ion binding	5.52E-04
24	GO:0004659: prenyltransferase activity	5.59E-04
25	GO:0004252: serine-type endopeptidase activity	1.03E-03
26	GO:0008194: UDP-glycosyltransferase activity	1.81E-03
27	GO:0004817: cysteine-tRNA ligase activity	1.81E-03
28	GO:0004824: lysine-tRNA ligase activity	1.81E-03
29	GO:0034256: chlorophyll(ide) b reductase activity	1.81E-03
30	GO:0004827: proline-tRNA ligase activity	1.81E-03
31	GO:0004828: serine-tRNA ligase activity	1.81E-03
32	GO:0016851: magnesium chelatase activity	1.81E-03
33	GO:0004823: leucine-tRNA ligase activity	1.81E-03
34	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.81E-03
35	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.81E-03
36	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.81E-03
37	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.81E-03
38	GO:0035250: UDP-galactosyltransferase activity	1.81E-03
39	GO:0004362: glutathione-disulfide reductase activity	1.81E-03
40	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.81E-03
41	GO:0031177: phosphopantetheine binding	1.81E-03
42	GO:0004467: long-chain fatty acid-CoA ligase activity	1.81E-03
43	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.00E-03
44	GO:0008312: 7S RNA binding	2.66E-03
45	GO:0051087: chaperone binding	2.66E-03
46	GO:0004826: phenylalanine-tRNA ligase activity	4.11E-03
47	GO:0004462: lactoylglutathione lyase activity	4.11E-03
48	GO:0004665: prephenate dehydrogenase (NADP+) activity	4.11E-03
49	GO:0019204: obsolete nucleotide phosphatase activity	4.11E-03
50	GO:0005347: ATP transmembrane transporter activity	4.11E-03
51	GO:0045485: omega-6 fatty acid desaturase activity	4.11E-03
52	GO:0004392: heme oxygenase (decyclizing) activity	4.11E-03
53	GO:0051920: peroxiredoxin activity	4.11E-03
54	GO:0016630: protochlorophyllide reductase activity	4.11E-03
55	GO:0008977: prephenate dehydrogenase (NAD+) activity	4.11E-03
56	GO:0015020: glucuronosyltransferase activity	6.98E-03
57	GO:0080116: glucuronoxylan glucuronosyltransferase activity	6.98E-03
58	GO:0003959: NADPH dehydrogenase activity	6.98E-03
59	GO:0032549: ribonucleoside binding	6.98E-03
60	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.03E-02
61	GO:0004765: shikimate kinase activity	1.03E-02
62	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.03E-02
63	GO:0004550: nucleoside diphosphate kinase activity	1.03E-02
64	GO:0016209: antioxidant activity	1.03E-02
65	GO:0003913: DNA photolyase activity	1.03E-02
66	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.03E-02
67	GO:0070569: uridylyltransferase activity	1.03E-02
68	GO:0015018: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	1.03E-02
69	GO:0016760: cellulose synthase (UDP-forming) activity	1.07E-02
70	GO:0016831: carboxy-lyase activity	1.24E-02
71	GO:0016987: sigma factor activity	1.42E-02
72	GO:0008173: RNA methyltransferase activity	1.84E-02
73	GO:0031072: heat shock protein binding	2.26E-02
74	GO:0004525: ribonuclease III activity	2.30E-02
75	GO:0004568: chitinase activity	2.30E-02
76	GO:0005525: GTP binding	2.32E-02
77	GO:0005507: copper ion binding	2.65E-02
78	GO:0043022: ribosome binding	2.81E-02
79	GO:0005524: ATP binding	3.01E-02
80	GO:0019843: rRNA binding	3.03E-02
81	GO:0051082: unfolded protein binding	3.07E-02
82	GO:0000166: nucleotide binding	3.18E-02
83	GO:0008266: poly(U) RNA binding	3.34E-02
84	GO:0000049: tRNA binding	3.92E-02
85	GO:0008236: serine-type peptidase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009526: plastid envelope	0.00E+00
5	GO:0009507: chloroplast	1.05E-42
6	GO:0009570: chloroplast stroma	4.95E-35
7	GO:0009941: chloroplast envelope	5.22E-30
8	GO:0009535: chloroplast thylakoid membrane	5.09E-10
9	GO:0009579: thylakoid	3.71E-09
10	GO:0009532: plastid stroma	6.44E-06
11	GO:0005840: ribosome	7.37E-06
12	GO:0009536: plastid	2.08E-05
13	GO:0009840: chloroplastic endopeptidase Clp complex	3.17E-05
14	GO:0009534: chloroplast thylakoid	2.05E-04
15	GO:0030529: intracellular ribonucleoprotein complex	5.23E-04
16	GO:0009295: nucleoid	7.23E-04
17	GO:0000311: plastid large ribosomal subunit	1.81E-03
18	GO:0005960: glycine cleavage complex	1.81E-03
19	GO:0048500: signal recognition particle	2.00E-03
20	GO:0010319: stromule	2.23E-03
21	GO:0009533: chloroplast stromal thylakoid	4.11E-03
22	GO:0009706: chloroplast inner membrane	4.87E-03
23	GO:0042651: thylakoid membrane	9.24E-03
24	GO:0005737: cytoplasm	1.28E-02
25	GO:0005739: mitochondrion	1.81E-02
26	GO:0019898: extrinsic component of membrane	1.84E-02
27	GO:0019013: viral nucleocapsid	2.03E-02
28	GO:0005622: intracellular	2.07E-02
29	GO:0009654: photosystem II oxygen evolving complex	2.30E-02
30	GO:0048046: apoplast	2.39E-02
31	GO:0005759: mitochondrial matrix	3.32E-02