co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G377855

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042221: response to chemical	0.00E+00
2	GO:0010028: xanthophyll cycle	0.00E+00
3	GO:0019676: ammonia assimilation cycle	0.00E+00
4	GO:0035436: triose phosphate transmembrane transport	0.00E+00
5	GO:0015714: phosphoenolpyruvate transport	0.00E+00
6	GO:0030243: cellulose metabolic process	0.00E+00
7	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
8	GO:0055070: copper ion homeostasis	0.00E+00
9	GO:0051188: cofactor biosynthetic process	0.00E+00
10	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
11	GO:2000505: regulation of energy homeostasis	0.00E+00
12	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
13	GO:0015979: photosynthesis	1.24E-21
14	GO:0010207: photosystem II assembly	2.45E-14
15	GO:0006098: pentose-phosphate shunt	3.96E-14
16	GO:0015995: chlorophyll biosynthetic process	1.10E-13
17	GO:0009773: photosynthetic electron transport in photosystem I	4.99E-12
18	GO:0006364: rRNA processing	6.33E-10
19	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.63E-10
20	GO:0010027: thylakoid membrane organization	4.04E-09
21	GO:0016117: carotenoid biosynthetic process	8.28E-09
22	GO:0009637: response to blue light	8.28E-09
23	GO:0070838: divalent metal ion transport	9.71E-09
24	GO:0010114: response to red light	1.45E-08
25	GO:0010218: response to far red light	2.43E-08
26	GO:0030003: cellular cation homeostasis	8.52E-08
27	GO:0009902: chloroplast relocation	9.06E-08
28	GO:0043085: positive regulation of catalytic activity	2.06E-07
29	GO:0000023: maltose metabolic process	8.03E-07
30	GO:0019252: starch biosynthetic process	1.61E-06
31	GO:0009772: photosynthetic electron transport in photosystem II	2.02E-06
32	GO:0006766: vitamin metabolic process	8.56E-06
33	GO:0009108: coenzyme biosynthetic process	8.56E-06
34	GO:0009106: lipoate metabolic process	8.56E-06
35	GO:0010155: regulation of proton transport	1.32E-05
36	GO:0010103: stomatal complex morphogenesis	1.70E-05
37	GO:0009072: aromatic amino acid family metabolic process	2.34E-05
38	GO:0080167: response to karrikin	4.91E-05
39	GO:0006814: sodium ion transport	5.01E-05
40	GO:0006546: glycine catabolic process	6.87E-05
41	GO:0009765: photosynthesis, light harvesting	6.87E-05
42	GO:0010196: nonphotochemical quenching	9.28E-05
43	GO:0019216: regulation of lipid metabolic process	9.28E-05
44	GO:0009595: detection of biotic stimulus	9.28E-05
45	GO:0019344: cysteine biosynthetic process	1.14E-04
46	GO:0009767: photosynthetic electron transport chain	1.18E-04
47	GO:0006636: unsaturated fatty acid biosynthetic process	1.50E-04
48	GO:0019748: secondary metabolic process	1.66E-04
49	GO:0000096: sulfur amino acid metabolic process	1.66E-04
50	GO:0043900: regulation of multi-organism process	1.66E-04
51	GO:0018298: protein-chromophore linkage	2.75E-04
52	GO:0009411: response to UV	3.79E-04
53	GO:0010206: photosystem II repair	3.79E-04
54	GO:0015986: ATP synthesis coupled proton transport	4.46E-04
55	GO:0009695: jasmonic acid biosynthetic process	4.46E-04
56	GO:0022900: electron transport chain	4.95E-04
57	GO:0010310: regulation of hydrogen peroxide metabolic process	5.18E-04
58	GO:0015977: carbon fixation	6.78E-04
59	GO:0016556: mRNA modification	1.07E-03
60	GO:0009697: salicylic acid biosynthetic process	1.07E-03
61	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.30E-03
62	GO:0019761: glucosinolate biosynthetic process	1.30E-03
63	GO:0006875: cellular metal ion homeostasis	1.36E-03
64	GO:0044272: sulfur compound biosynthetic process	1.36E-03
65	GO:0031408: oxylipin biosynthetic process	1.82E-03
66	GO:0042793: transcription from plastid promoter	1.82E-03
67	GO:0022904: respiratory electron transport chain	2.26E-03
68	GO:0051289: protein homotetramerization	2.26E-03
69	GO:0019760: glucosinolate metabolic process	2.26E-03
70	GO:0006733: oxidoreduction coenzyme metabolic process	2.26E-03
71	GO:0016024: CDP-diacylglycerol biosynthetic process	2.26E-03
72	GO:0009744: response to sucrose	2.34E-03
73	GO:0006833: water transport	2.41E-03
74	GO:0009750: response to fructose	2.41E-03
75	GO:0019684: photosynthesis, light reaction	2.74E-03
76	GO:0009749: response to glucose	2.74E-03
77	GO:0009657: plastid organization	2.74E-03
78	GO:0009624: response to nematode	2.91E-03
79	GO:0009966: regulation of signal transduction	3.11E-03
80	GO:0009644: response to high light intensity	3.12E-03
81	GO:0006014: D-ribose metabolic process	3.31E-03
82	GO:0016485: protein processing	3.31E-03
83	GO:0051260: protein homooligomerization	3.31E-03
84	GO:0009117: nucleotide metabolic process	3.31E-03
85	GO:0045037: protein import into chloroplast stroma	3.31E-03
86	GO:0006612: protein targeting to membrane	3.53E-03
87	GO:0010200: response to chitin	3.53E-03
88	GO:0010363: regulation of plant-type hypersensitive response	3.95E-03
89	GO:0035304: regulation of protein dephosphorylation	3.95E-03
90	GO:0046777: protein autophosphorylation	3.95E-03
91	GO:0009409: response to cold	4.29E-03
92	GO:0009867: jasmonic acid mediated signaling pathway	4.40E-03
93	GO:0031348: negative regulation of defense response	4.40E-03
94	GO:0007568: aging	4.54E-03
95	GO:0015994: chlorophyll metabolic process	4.54E-03
96	GO:0070084: protein initiator methionine removal	4.54E-03
97	GO:0006796: phosphate-containing compound metabolic process	4.54E-03
98	GO:0009813: flavonoid biosynthetic process	4.54E-03
99	GO:0034755: iron ion transmembrane transport	4.54E-03
100	GO:0055114: oxidation-reduction process	4.69E-03
101	GO:0046688: response to copper ion	5.85E-03
102	GO:0006542: glutamine biosynthetic process	5.85E-03
103	GO:0017148: negative regulation of translation	5.85E-03
104	GO:0042742: defense response to bacterium	6.29E-03
105	GO:0000165: MAPK cascade	6.46E-03
106	GO:0000413: protein peptidyl-prolyl isomerization	6.46E-03
107	GO:0009416: response to light stimulus	7.24E-03
108	GO:0009987: cellular process	7.31E-03
109	GO:0034660: ncRNA metabolic process	7.31E-03
110	GO:0005985: sucrose metabolic process	8.86E-03
111	GO:0046939: nucleotide phosphorylation	8.86E-03
112	GO:0009832: plant-type cell wall biogenesis	1.23E-02
113	GO:0009658: chloroplast organization	1.36E-02
114	GO:0006006: glucose metabolic process	1.42E-02
115	GO:0006754: ATP biosynthetic process	1.42E-02
116	GO:0006354: DNA-templated transcription, elongation	1.42E-02
117	GO:0006096: glycolytic process	1.73E-02
118	GO:0008652: cellular amino acid biosynthetic process	1.82E-02
119	GO:0006108: malate metabolic process	2.04E-02
120	GO:0006655: phosphatidylglycerol biosynthetic process	2.04E-02
121	GO:0007030: Golgi organization	2.26E-02
122	GO:0006972: hyperosmotic response	2.49E-02
123	GO:0016049: cell growth	2.49E-02
124	GO:0006631: fatty acid metabolic process	2.73E-02
125	GO:0030154: cell differentiation	2.73E-02
126	GO:0015992: proton transport	2.73E-02
127	GO:0016126: sterol biosynthetic process	2.73E-02
128	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.98E-02
129	GO:0045893: positive regulation of transcription, DNA-templated	2.98E-02
130	GO:0050832: defense response to fungus	3.11E-02
131	GO:0010193: response to ozone	3.24E-02
132	GO:0006807: nitrogen compound metabolic process	3.50E-02
133	GO:0010224: response to UV-B	3.50E-02
134	GO:0006139: nucleobase-containing compound metabolic process	3.50E-02
135	GO:0009817: defense response to fungus, incompatible interaction	3.78E-02
136	GO:0009853: photorespiration	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
4	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	0.00E+00
5	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
8	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
11	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
12	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
13	GO:0004802: transketolase activity	0.00E+00
14	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
15	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
16	GO:0016168: chlorophyll binding	3.73E-07
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.47E-07
18	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.87E-05
19	GO:0016984: ribulose-bisphosphate carboxylase activity	9.28E-05
20	GO:0009055: electron carrier activity	1.01E-04
21	GO:0051537: 2 iron, 2 sulfur cluster binding	4.46E-04
22	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	5.87E-04
23	GO:0004618: phosphoglycerate kinase activity	5.87E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.87E-04
25	GO:0015088: copper uptake transmembrane transporter activity	5.87E-04
26	GO:0015140: malate transmembrane transporter activity	5.87E-04
27	GO:0045430: chalcone isomerase activity	1.36E-03
28	GO:0004605: phosphatidate cytidylyltransferase activity	1.36E-03
29	GO:0051920: peroxiredoxin activity	1.36E-03
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.36E-03
31	GO:0005215: transporter activity	1.45E-03
32	GO:0016872: intramolecular lyase activity	2.26E-03
33	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.26E-03
34	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.31E-03
35	GO:0016209: antioxidant activity	3.31E-03
36	GO:0071949: FAD binding	3.31E-03
37	GO:0004332: fructose-bisphosphate aldolase activity	3.31E-03
38	GO:0004747: ribokinase activity	3.31E-03
39	GO:0005381: iron ion transmembrane transporter activity	4.54E-03
40	GO:0004470: malic enzyme activity	4.54E-03
41	GO:0004017: adenylate kinase activity	4.54E-03
42	GO:0070006: metalloaminopeptidase activity	4.54E-03
43	GO:0051287: NAD binding	5.83E-03
44	GO:0008235: metalloexopeptidase activity	5.85E-03
45	GO:0004356: glutamate-ammonia ligase activity	5.85E-03
46	GO:0051536: iron-sulfur cluster binding	6.17E-03
47	GO:0019201: nucleotide kinase activity	7.31E-03
48	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.31E-03
49	GO:0019205: nucleobase-containing compound kinase activity	7.31E-03
50	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.31E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.66E-03
52	GO:0004427: inorganic diphosphatase activity	1.05E-02
53	GO:0042578: phosphoric ester hydrolase activity	1.05E-02
54	GO:0008266: poly(U) RNA binding	1.05E-02
55	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.05E-02
56	GO:0004177: aminopeptidase activity	1.23E-02
57	GO:0046914: transition metal ion binding	1.42E-02
58	GO:0048037: cofactor binding	1.61E-02
59	GO:0003690: double-stranded DNA binding	1.61E-02
60	GO:0042803: protein homodimerization activity	2.14E-02
61	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.26E-02
62	GO:0004713: protein tyrosine kinase activity	2.49E-02
63	GO:0008080: N-acetyltransferase activity	2.73E-02
64	GO:0005506: iron ion binding	3.29E-02
65	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.97E-02
66	GO:0015078: hydrogen ion transmembrane transporter activity	4.06E-02
67	GO:0004222: metalloendopeptidase activity	4.35E-02
68	GO:0016597: amino acid binding	4.64E-02
69	GO:0016491: oxidoreductase activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0009507: chloroplast	2.24E-38
3	GO:0009535: chloroplast thylakoid membrane	7.75E-32
4	GO:0009941: chloroplast envelope	1.88E-24
5	GO:0009579: thylakoid	2.41E-24
6	GO:0009522: photosystem I	6.16E-14
7	GO:0009534: chloroplast thylakoid	4.39E-12
8	GO:0009543: chloroplast thylakoid lumen	1.14E-11
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.24E-10
10	GO:0031977: thylakoid lumen	5.56E-10
11	GO:0009538: photosystem I reaction center	1.68E-09
12	GO:0010287: plastoglobule	4.56E-09
13	GO:0009570: chloroplast stroma	2.16E-08
14	GO:0009523: photosystem II	1.58E-07
15	GO:0016020: membrane	4.00E-07
16	GO:0042651: thylakoid membrane	1.18E-04
17	GO:0009508: plastid chromosome	1.66E-04
18	GO:0019898: extrinsic component of membrane	2.63E-04
19	GO:0009654: photosystem II oxygen evolving complex	3.79E-04
20	GO:0048046: apoplast	4.42E-04
21	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.87E-04
22	GO:0030093: chloroplast photosystem I	5.87E-04
23	GO:0009517: PSII associated light-harvesting complex II	5.87E-04
24	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	5.87E-04
25	GO:0009706: chloroplast inner membrane	5.87E-04
26	GO:0009295: nucleoid	1.30E-03
27	GO:0009533: chloroplast stromal thylakoid	1.36E-03
28	GO:0010319: stromule	1.42E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	7.31E-03
30	GO:0009536: plastid	8.22E-03