co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G359581

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
3	GO:0032544: plastid translation	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.09E-16
7	GO:0006412: translation	1.30E-15
8	GO:0010027: thylakoid membrane organization	5.43E-13
9	GO:0015995: chlorophyll biosynthetic process	3.00E-10
10	GO:0045036: protein targeting to chloroplast	9.27E-10
11	GO:0016226: iron-sulfur cluster assembly	1.02E-09
12	GO:0010207: photosystem II assembly	3.62E-08
13	GO:0006364: rRNA processing	3.00E-07
14	GO:0006098: pentose-phosphate shunt	4.15E-07
15	GO:0006418: tRNA aminoacylation for protein translation	1.55E-06
16	GO:0009658: chloroplast organization	1.55E-06
17	GO:0009902: chloroplast relocation	4.09E-06
18	GO:0006636: unsaturated fatty acid biosynthetic process	7.39E-06
19	GO:0042372: phylloquinone biosynthetic process	1.43E-05
20	GO:0006733: oxidoreduction coenzyme metabolic process	5.02E-05
21	GO:0016556: mRNA modification	6.35E-05
22	GO:0006354: DNA-templated transcription, elongation	6.35E-05
23	GO:0006546: glycine catabolic process	8.66E-05
24	GO:0009117: nucleotide metabolic process	1.10E-04
25	GO:0042793: transcription from plastid promoter	1.49E-04
26	GO:0019748: secondary metabolic process	1.97E-04
27	GO:0030154: cell differentiation	2.83E-04
28	GO:0048481: plant ovule development	2.87E-04
29	GO:0009106: lipoate metabolic process	4.45E-04
30	GO:0006766: vitamin metabolic process	4.45E-04
31	GO:0009108: coenzyme biosynthetic process	4.45E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	4.72E-04
33	GO:0010228: vegetative to reproductive phase transition of meristem	5.81E-04
34	GO:0018160: peptidyl-pyrromethane cofactor linkage	6.53E-04
35	GO:0006573: valine metabolic process	6.53E-04
36	GO:0006433: prolyl-tRNA aminoacylation	6.53E-04
37	GO:0032543: mitochondrial translation	6.53E-04
38	GO:0009069: serine family amino acid metabolic process	6.53E-04
39	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.53E-04
40	GO:0006430: lysyl-tRNA aminoacylation	6.53E-04
41	GO:0008361: regulation of cell size	6.53E-04
42	GO:0006434: seryl-tRNA aminoacylation	6.53E-04
43	GO:0009073: aromatic amino acid family biosynthetic process	1.29E-03
44	GO:0016117: carotenoid biosynthetic process	1.43E-03
45	GO:0019464: glycine decarboxylation via glycine cleavage system	1.51E-03
46	GO:0006779: porphyrin-containing compound biosynthetic process	1.51E-03
47	GO:0006432: phenylalanyl-tRNA aminoacylation	1.51E-03
48	GO:0010109: regulation of photosynthesis	1.51E-03
49	GO:0010236: plastoquinone biosynthetic process	1.51E-03
50	GO:0048653: anther development	1.51E-03
51	GO:0006218: uridine catabolic process	1.51E-03
52	GO:0006655: phosphatidylglycerol biosynthetic process	2.10E-03
53	GO:0042742: defense response to bacterium	2.26E-03
54	GO:0042545: cell wall modification	2.79E-03
55	GO:0009793: embryo development ending in seed dormancy	3.61E-03
56	GO:0006353: DNA-templated transcription, termination	3.69E-03
57	GO:0007389: pattern specification process	3.69E-03
58	GO:0043085: positive regulation of catalytic activity	4.37E-03
59	GO:0009965: leaf morphogenesis	4.67E-03
60	GO:0000096: sulfur amino acid metabolic process	5.02E-03
61	GO:0006569: tryptophan catabolic process	5.02E-03
62	GO:0009772: photosynthetic electron transport in photosystem II	5.02E-03
63	GO:0009695: jasmonic acid biosynthetic process	5.11E-03
64	GO:0009913: epidermal cell differentiation	6.50E-03
65	GO:0007005: mitochondrion organization	6.50E-03
66	GO:0045893: positive regulation of transcription, DNA-templated	6.70E-03
67	GO:0006032: chitin catabolic process	8.11E-03
68	GO:0009814: defense response, incompatible interaction	8.11E-03
69	GO:0033014: tetrapyrrole biosynthetic process	8.11E-03
70	GO:0034660: ncRNA metabolic process	8.11E-03
71	GO:0009926: auxin polar transport	8.11E-03
72	GO:0009735: response to cytokinin	8.92E-03
73	GO:0043039: tRNA aminoacylation	9.86E-03
74	GO:0006399: tRNA metabolic process	9.86E-03
75	GO:0030245: cellulose catabolic process	9.86E-03
76	GO:0019344: cysteine biosynthetic process	1.04E-02
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.17E-02
78	GO:0040007: growth	1.17E-02
79	GO:0010015: root morphogenesis	1.17E-02
80	GO:0048868: pollen tube development	1.17E-02
81	GO:0009832: plant-type cell wall biogenesis	1.37E-02
82	GO:0009684: indoleacetic acid biosynthetic process	1.37E-02
83	GO:0015979: photosynthesis	1.40E-02
84	GO:0009697: salicylic acid biosynthetic process	1.58E-02
85	GO:0006414: translational elongation	1.79E-02
86	GO:0009409: response to cold	1.85E-02
87	GO:0016998: cell wall macromolecule catabolic process	2.03E-02
88	GO:0048316: seed development	2.26E-02
89	GO:0008033: tRNA processing	2.26E-02
90	GO:0051607: defense response to virus	2.26E-02
91	GO:0010075: regulation of meristem growth	2.52E-02
92	GO:0009657: plastid organization	3.04E-02
93	GO:0019684: photosynthesis, light reaction	3.04E-02
94	GO:0009664: plant-type cell wall organization	3.32E-02
95	GO:0010267: production of ta-siRNAs involved in RNA interference	3.32E-02
96	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.32E-02
97	GO:0006352: DNA-templated transcription, initiation	3.61E-02
98	GO:0010103: stomatal complex morphogenesis	3.61E-02
99	GO:0035304: regulation of protein dephosphorylation	3.90E-02
100	GO:0009553: embryo sac development	4.21E-02
101	GO:0009817: defense response to fungus, incompatible interaction	4.21E-02
102	GO:0042254: ribosome biogenesis	4.84E-02
103	GO:0007017: microtubule-based process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
2	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
3	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
4	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	1.45E-13
7	GO:0004812: aminoacyl-tRNA ligase activity	2.27E-06
8	GO:0019843: rRNA binding	6.73E-05
9	GO:0004765: shikimate kinase activity	1.10E-04
10	GO:0016209: antioxidant activity	1.10E-04
11	GO:0004824: lysine-tRNA ligase activity	6.53E-04
12	GO:0004827: proline-tRNA ligase activity	6.53E-04
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.53E-04
14	GO:0004418: hydroxymethylbilane synthase activity	6.53E-04
15	GO:0016851: magnesium chelatase activity	6.53E-04
16	GO:0004828: serine-tRNA ligase activity	6.53E-04
17	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	6.53E-04
18	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	6.53E-04
19	GO:0004831: tyrosine-tRNA ligase activity	6.53E-04
20	GO:0000049: tRNA binding	1.01E-03
21	GO:0003723: RNA binding	1.41E-03
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.51E-03
23	GO:0045437: uridine nucleosidase activity	1.51E-03
24	GO:0047622: adenosine nucleosidase activity	1.51E-03
25	GO:0051920: peroxiredoxin activity	1.51E-03
26	GO:0047724: inosine nucleosidase activity	1.51E-03
27	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.51E-03
28	GO:0004826: phenylalanine-tRNA ligase activity	1.51E-03
29	GO:0033897: ribonuclease T2 activity	2.50E-03
30	GO:0032549: ribonucleoside binding	2.50E-03
31	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	3.69E-03
32	GO:0070569: uridylyltransferase activity	3.69E-03
33	GO:0004659: prenyltransferase activity	3.69E-03
34	GO:0016987: sigma factor activity	5.02E-03
35	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.02E-03
36	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	8.11E-03
37	GO:0004568: chitinase activity	8.11E-03
38	GO:0008810: cellulase activity	8.11E-03
39	GO:0008312: 7S RNA binding	9.86E-03
40	GO:0043022: ribosome binding	9.86E-03
41	GO:0042578: phosphoric ester hydrolase activity	1.17E-02
42	GO:0003746: translation elongation factor activity	1.30E-02
43	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.24E-02
44	GO:0016760: cellulose synthase (UDP-forming) activity	2.52E-02
45	GO:0031072: heat shock protein binding	4.21E-02
46	GO:0004252: serine-type endopeptidase activity	4.27E-02
47	GO:0004222: metalloendopeptidase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.15E-31
2	GO:0009570: chloroplast stroma	5.52E-28
3	GO:0005840: ribosome	1.13E-18
4	GO:0009941: chloroplast envelope	1.38E-16
5	GO:0030529: intracellular ribonucleoprotein complex	5.14E-08
6	GO:0009579: thylakoid	1.94E-06
7	GO:0005622: intracellular	2.26E-06
8	GO:0009295: nucleoid	8.66E-05
9	GO:0009534: chloroplast thylakoid	5.30E-04
10	GO:0000311: plastid large ribosomal subunit	6.53E-04
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.53E-04
12	GO:0005960: glycine cleavage complex	6.53E-04
13	GO:0009535: chloroplast thylakoid membrane	8.17E-04
14	GO:0015934: large ribosomal subunit	1.73E-03
15	GO:0009543: chloroplast thylakoid lumen	2.10E-03
16	GO:0055028: cortical microtubule	2.50E-03
17	GO:0009840: chloroplastic endopeptidase Clp complex	5.02E-03
18	GO:0048500: signal recognition particle	8.11E-03
19	GO:0009532: plastid stroma	9.86E-03
20	GO:0031977: thylakoid lumen	1.30E-02
21	GO:0019013: viral nucleocapsid	3.90E-02