co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G320325

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090342: regulation of cell aging	0.00E+00
2	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0042407: cristae formation	0.00E+00
8	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
9	GO:0043953: protein transport by the Tat complex	0.00E+00
10	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
11	GO:0046506: sulfolipid biosynthetic process	0.00E+00
12	GO:1901259: chloroplast rRNA processing	0.00E+00
13	GO:0010027: thylakoid membrane organization	6.50E-19
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.19E-15
15	GO:0016226: iron-sulfur cluster assembly	7.05E-11
16	GO:0010207: photosystem II assembly	3.32E-10
17	GO:0009902: chloroplast relocation	4.16E-09
18	GO:0009658: chloroplast organization	4.93E-09
19	GO:0006364: rRNA processing	1.70E-08
20	GO:0045036: protein targeting to chloroplast	1.81E-08
21	GO:0045038: protein import into chloroplast thylakoid membrane	1.99E-08
22	GO:0006655: phosphatidylglycerol biosynthetic process	3.31E-08
23	GO:0042793: transcription from plastid promoter	3.31E-08
24	GO:0035304: regulation of protein dephosphorylation	1.19E-05
25	GO:0006098: pentose-phosphate shunt	1.38E-05
26	GO:0006418: tRNA aminoacylation for protein translation	2.38E-05
27	GO:0045893: positive regulation of transcription, DNA-templated	2.48E-05
28	GO:0042372: phylloquinone biosynthetic process	4.64E-05
29	GO:0006636: unsaturated fatty acid biosynthetic process	5.16E-05
30	GO:0015995: chlorophyll biosynthetic process	5.43E-05
31	GO:0009073: aromatic amino acid family biosynthetic process	7.61E-05
32	GO:0006399: tRNA metabolic process	8.69E-05
33	GO:0010103: stomatal complex morphogenesis	1.46E-04
34	GO:0006733: oxidoreduction coenzyme metabolic process	1.52E-04
35	GO:0009773: photosynthetic electron transport in photosystem I	1.81E-04
36	GO:0048481: plant ovule development	2.00E-04
37	GO:0009117: nucleotide metabolic process	3.20E-04
38	GO:0006353: DNA-templated transcription, termination	3.20E-04
39	GO:0006546: glycine catabolic process	3.52E-04
40	GO:0006779: porphyrin-containing compound biosynthetic process	3.52E-04
41	GO:0019748: secondary metabolic process	5.45E-04
42	GO:0009306: protein secretion	8.35E-04
43	GO:0030154: cell differentiation	1.04E-03
44	GO:0009108: coenzyme biosynthetic process	1.19E-03
45	GO:0034660: ncRNA metabolic process	1.19E-03
46	GO:0009106: lipoate metabolic process	1.19E-03
47	GO:0006766: vitamin metabolic process	1.19E-03
48	GO:0009443: pyridoxal 5'-phosphate salvage	1.27E-03
49	GO:0006434: seryl-tRNA aminoacylation	1.27E-03
50	GO:0016050: vesicle organization	1.27E-03
51	GO:0006433: prolyl-tRNA aminoacylation	1.27E-03
52	GO:0032543: mitochondrial translation	1.27E-03
53	GO:0006423: cysteinyl-tRNA aminoacylation	1.27E-03
54	GO:0009069: serine family amino acid metabolic process	1.27E-03
55	GO:0071722: detoxification of arsenic-containing substance	1.27E-03
56	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.27E-03
57	GO:0000023: maltose metabolic process	1.37E-03
58	GO:0009407: toxin catabolic process	2.57E-03
59	GO:0010228: vegetative to reproductive phase transition of meristem	2.59E-03
60	GO:0010236: plastoquinone biosynthetic process	2.83E-03
61	GO:0032544: plastid translation	2.83E-03
62	GO:1901671: positive regulation of superoxide dismutase activity	2.83E-03
63	GO:0019464: glycine decarboxylation via glycine cleavage system	2.83E-03
64	GO:0006432: phenylalanyl-tRNA aminoacylation	2.83E-03
65	GO:0010109: regulation of photosynthesis	2.83E-03
66	GO:0043085: positive regulation of catalytic activity	3.06E-03
67	GO:0006200: obsolete ATP catabolic process	3.06E-03
68	GO:0006354: DNA-templated transcription, elongation	3.17E-03
69	GO:0016556: mRNA modification	3.17E-03
70	GO:0006412: translation	3.26E-03
71	GO:0009735: response to cytokinin	3.92E-03
72	GO:0006457: protein folding	3.98E-03
73	GO:0006184: obsolete GTP catabolic process	4.28E-03
74	GO:0019344: cysteine biosynthetic process	4.81E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	4.83E-03
76	GO:0010731: protein glutathionylation	4.83E-03
77	GO:0016075: rRNA catabolic process	4.83E-03
78	GO:0043067: regulation of programmed cell death	4.83E-03
79	GO:0009247: glycolipid biosynthetic process	4.83E-03
80	GO:0051607: defense response to virus	5.42E-03
81	GO:0071704: organic substance metabolic process	7.14E-03
82	GO:0006782: protoporphyrinogen IX biosynthetic process	7.14E-03
83	GO:0006165: nucleoside diphosphate phosphorylation	7.14E-03
84	GO:0006228: UTP biosynthetic process	7.14E-03
85	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.14E-03
86	GO:0051205: protein insertion into membrane	7.14E-03
87	GO:0045037: protein import into chloroplast stroma	7.14E-03
88	GO:0019375: galactolipid biosynthetic process	7.14E-03
89	GO:0006183: GTP biosynthetic process	7.14E-03
90	GO:0006241: CTP biosynthetic process	7.14E-03
91	GO:0042545: cell wall modification	7.30E-03
92	GO:0019252: starch biosynthetic process	7.62E-03
93	GO:0019684: photosynthesis, light reaction	8.33E-03
94	GO:0010267: production of ta-siRNAs involved in RNA interference	9.46E-03
95	GO:0035196: production of miRNAs involved in gene silencing by miRNA	9.46E-03
96	GO:0006414: translational elongation	9.62E-03
97	GO:0070084: protein initiator methionine removal	9.76E-03
98	GO:0009308: amine metabolic process	9.76E-03
99	GO:0000096: sulfur amino acid metabolic process	9.76E-03
100	GO:0006569: tryptophan catabolic process	9.76E-03
101	GO:0060416: response to growth hormone	9.76E-03
102	GO:0009772: photosynthetic electron transport in photosystem II	9.76E-03
103	GO:0009813: flavonoid biosynthetic process	9.76E-03
104	GO:0048229: gametophyte development	1.27E-02
105	GO:0007005: mitochondrion organization	1.27E-02
106	GO:0006749: glutathione metabolic process	1.27E-02
107	GO:0009695: jasmonic acid biosynthetic process	1.33E-02
108	GO:0009965: leaf morphogenesis	1.57E-02
109	GO:0009814: defense response, incompatible interaction	1.58E-02
110	GO:0010583: response to cyclopentenone	1.58E-02
111	GO:0030003: cellular cation homeostasis	1.58E-02
112	GO:0009704: de-etiolation	1.58E-02
113	GO:0009987: cellular process	1.58E-02
114	GO:0009411: response to UV	1.58E-02
115	GO:0006508: proteolysis	1.83E-02
116	GO:0009793: embryo development ending in seed dormancy	1.92E-02
117	GO:0015693: magnesium ion transport	1.93E-02
118	GO:0043039: tRNA aminoacylation	1.93E-02
119	GO:0051604: protein maturation	1.93E-02
120	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.29E-02
121	GO:0045087: innate immune response	2.29E-02
122	GO:0009585: red, far-red light phototransduction	2.29E-02
123	GO:0009684: indoleacetic acid biosynthetic process	2.68E-02
124	GO:0016117: carotenoid biosynthetic process	2.71E-02
125	GO:0019761: glucosinolate biosynthetic process	2.92E-02
126	GO:0048527: lateral root development	3.10E-02
127	GO:0009697: salicylic acid biosynthetic process	3.10E-02
128	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.53E-02
129	GO:0009409: response to cold	3.64E-02
130	GO:0008033: tRNA processing	4.46E-02
131	GO:0048316: seed development	4.46E-02
132	GO:0015979: photosynthesis	4.61E-02
133	GO:0010197: polar nucleus fusion	4.95E-02
134	GO:0015996: chlorophyll catabolic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
3	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0005504: fatty acid binding	0.00E+00
6	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
9	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
10	GO:0004812: aminoacyl-tRNA ligase activity	3.38E-05
11	GO:0004765: shikimate kinase activity	3.20E-04
12	GO:0004252: serine-type endopeptidase activity	3.23E-04
13	GO:0008236: serine-type peptidase activity	7.69E-04
14	GO:0004828: serine-tRNA ligase activity	1.27E-03
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.27E-03
16	GO:0004831: tyrosine-tRNA ligase activity	1.27E-03
17	GO:0004362: glutathione-disulfide reductase activity	1.27E-03
18	GO:0070402: NADPH binding	1.27E-03
19	GO:0008146: sulfotransferase activity	1.27E-03
20	GO:0004817: cysteine-tRNA ligase activity	1.27E-03
21	GO:0034256: chlorophyll(ide) b reductase activity	1.27E-03
22	GO:0004827: proline-tRNA ligase activity	1.27E-03
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.27E-03
24	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.27E-03
25	GO:0000049: tRNA binding	2.57E-03
26	GO:0045430: chalcone isomerase activity	2.83E-03
27	GO:0004826: phenylalanine-tRNA ligase activity	2.83E-03
28	GO:0004853: uroporphyrinogen decarboxylase activity	2.83E-03
29	GO:0051082: unfolded protein binding	3.59E-03
30	GO:0000774: adenyl-nucleotide exchange factor activity	4.83E-03
31	GO:0016872: intramolecular lyase activity	4.83E-03
32	GO:0008233: peptidase activity	5.04E-03
33	GO:0003746: translation elongation factor activity	6.36E-03
34	GO:0016887: ATPase activity	6.74E-03
35	GO:0004550: nucleoside diphosphate kinase activity	7.14E-03
36	GO:0016209: antioxidant activity	7.14E-03
37	GO:0003913: DNA photolyase activity	7.14E-03
38	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	7.14E-03
39	GO:0070569: uridylyltransferase activity	7.14E-03
40	GO:0004659: prenyltransferase activity	7.14E-03
41	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	7.14E-03
42	GO:0003735: structural constituent of ribosome	8.77E-03
43	GO:0070006: metalloaminopeptidase activity	9.76E-03
44	GO:0016868: intramolecular transferase activity, phosphotransferases	9.76E-03
45	GO:0016987: sigma factor activity	9.76E-03
46	GO:0008235: metalloexopeptidase activity	1.27E-02
47	GO:0008173: RNA methyltransferase activity	1.27E-02
48	GO:0008565: protein transporter activity	1.33E-02
49	GO:0031072: heat shock protein binding	1.33E-02
50	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.58E-02
51	GO:0004525: ribonuclease III activity	1.58E-02
52	GO:0005525: GTP binding	1.81E-02
53	GO:0051087: chaperone binding	1.93E-02
54	GO:0008312: 7S RNA binding	1.93E-02
55	GO:0043022: ribosome binding	1.93E-02
56	GO:0008266: poly(U) RNA binding	2.29E-02
57	GO:0004177: aminopeptidase activity	2.68E-02
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.68E-02
59	GO:0015095: magnesium ion transmembrane transporter activity	2.68E-02
60	GO:0046873: metal ion transmembrane transporter activity	2.68E-02
61	GO:0046914: transition metal ion binding	3.10E-02
62	GO:0003924: GTPase activity	3.19E-02
63	GO:0003723: RNA binding	3.79E-02
64	GO:0000166: nucleotide binding	4.85E-02
65	GO:0048038: quinone binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	7.10E-37
3	GO:0009570: chloroplast stroma	6.95E-26
4	GO:0009941: chloroplast envelope	2.70E-14
5	GO:0009535: chloroplast thylakoid membrane	3.75E-11
6	GO:0009534: chloroplast thylakoid	1.96E-08
7	GO:0009840: chloroplastic endopeptidase Clp complex	1.13E-07
8	GO:0009532: plastid stroma	2.09E-06
9	GO:0009579: thylakoid	3.04E-06
10	GO:0005840: ribosome	2.35E-04
11	GO:0009295: nucleoid	3.52E-04
12	GO:0009527: plastid outer membrane	1.27E-03
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.27E-03
14	GO:0009526: plastid envelope	1.27E-03
15	GO:0005960: glycine cleavage complex	1.27E-03
16	GO:0044445: cytosolic part	1.27E-03
17	GO:0080085: signal recognition particle, chloroplast targeting	1.27E-03
18	GO:0009528: plastid inner membrane	1.27E-03
19	GO:0000311: plastid large ribosomal subunit	1.27E-03
20	GO:0030529: intracellular ribonucleoprotein complex	1.99E-03
21	GO:0009543: chloroplast thylakoid lumen	5.42E-03
22	GO:0009508: plastid chromosome	9.76E-03
23	GO:0019013: viral nucleocapsid	1.19E-02
24	GO:0031225: anchored component of membrane	1.27E-02
25	GO:0048500: signal recognition particle	1.58E-02
26	GO:0005759: mitochondrial matrix	1.96E-02
27	GO:0005875: microtubule associated complex	2.92E-02
28	GO:0010319: stromule	3.13E-02
29	GO:0015934: large ribosomal subunit	3.13E-02
30	GO:0031977: thylakoid lumen	3.36E-02
31	GO:0042651: thylakoid membrane	4.46E-02