co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G318635

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032544: plastid translation	0.00E+00
2	GO:0051188: cofactor biosynthetic process	0.00E+00
3	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
4	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
5	GO:0010028: xanthophyll cycle	0.00E+00
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.70E-16
7	GO:0010027: thylakoid membrane organization	2.88E-11
8	GO:0006098: pentose-phosphate shunt	1.26E-10
9	GO:0006412: translation	9.27E-09
10	GO:0015995: chlorophyll biosynthetic process	1.35E-08
11	GO:0000096: sulfur amino acid metabolic process	1.79E-08
12	GO:0009108: coenzyme biosynthetic process	1.56E-07
13	GO:0009106: lipoate metabolic process	1.56E-07
14	GO:0006766: vitamin metabolic process	1.56E-07
15	GO:0009902: chloroplast relocation	2.09E-07
16	GO:0006364: rRNA processing	5.00E-07
17	GO:0010207: photosystem II assembly	1.06E-06
18	GO:0006546: glycine catabolic process	3.10E-06
19	GO:0019748: secondary metabolic process	3.24E-06
20	GO:0006655: phosphatidylglycerol biosynthetic process	6.77E-06
21	GO:0042793: transcription from plastid promoter	6.77E-06
22	GO:0044272: sulfur compound biosynthetic process	1.67E-05
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.67E-05
24	GO:0016226: iron-sulfur cluster assembly	2.25E-05
25	GO:0009072: aromatic amino acid family metabolic process	3.65E-05
26	GO:0009695: jasmonic acid biosynthetic process	4.70E-05
27	GO:0006733: oxidoreduction coenzyme metabolic process	5.81E-05
28	GO:0006354: DNA-templated transcription, elongation	7.69E-05
29	GO:0019216: regulation of lipid metabolic process	1.27E-04
30	GO:0009117: nucleotide metabolic process	1.27E-04
31	GO:0045036: protein targeting to chloroplast	1.38E-04
32	GO:0016117: carotenoid biosynthetic process	1.88E-04
33	GO:0006636: unsaturated fatty acid biosynthetic process	2.24E-04
34	GO:0030154: cell differentiation	3.36E-04
35	GO:0006418: tRNA aminoacylation for protein translation	3.93E-04
36	GO:0009658: chloroplast organization	3.93E-04
37	GO:0034660: ncRNA metabolic process	5.05E-04
38	GO:0009773: photosynthetic electron transport in photosystem I	5.56E-04
39	GO:0008652: cellular amino acid biosynthetic process	6.49E-04
40	GO:0015979: photosynthesis	7.01E-04
41	GO:0006434: seryl-tRNA aminoacylation	7.11E-04
42	GO:0006573: valine metabolic process	7.11E-04
43	GO:0032543: mitochondrial translation	7.11E-04
44	GO:0009768: photosynthesis, light harvesting in photosystem I	7.11E-04
45	GO:0009069: serine family amino acid metabolic process	7.11E-04
46	GO:2000652: regulation of secondary cell wall biogenesis	7.11E-04
47	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	7.11E-04
48	GO:0016556: mRNA modification	1.41E-03
49	GO:0045893: positive regulation of transcription, DNA-templated	1.45E-03
50	GO:0009073: aromatic amino acid family biosynthetic process	1.51E-03
51	GO:0042372: phylloquinone biosynthetic process	1.64E-03
52	GO:0006432: phenylalanyl-tRNA aminoacylation	1.64E-03
53	GO:0009765: photosynthesis, light harvesting	1.71E-03
54	GO:0009767: photosynthetic electron transport chain	2.36E-03
55	GO:0031408: oxylipin biosynthetic process	2.36E-03
56	GO:0048481: plant ovule development	2.59E-03
57	GO:0006431: methionyl-tRNA aminoacylation	2.71E-03
58	GO:0019684: photosynthesis, light reaction	3.62E-03
59	GO:0006353: DNA-templated transcription, termination	4.01E-03
60	GO:0018298: protein-chromophore linkage	4.12E-03
61	GO:0010155: regulation of proton transport	4.12E-03
62	GO:0035304: regulation of protein dephosphorylation	5.18E-03
63	GO:0009965: leaf morphogenesis	5.44E-03
64	GO:0009308: amine metabolic process	5.46E-03
65	GO:0070838: divalent metal ion transport	5.46E-03
66	GO:0006569: tryptophan catabolic process	5.46E-03
67	GO:0015994: chlorophyll metabolic process	5.46E-03
68	GO:0009913: epidermal cell differentiation	7.07E-03
69	GO:0007005: mitochondrion organization	7.07E-03
70	GO:0010206: photosystem II repair	8.84E-03
71	GO:0010413: glucuronoxylan metabolic process	8.84E-03
72	GO:0010205: photoinhibition	8.84E-03
73	GO:0030003: cellular cation homeostasis	8.84E-03
74	GO:0009416: response to light stimulus	1.02E-02
75	GO:0010099: regulation of photomorphogenesis	1.07E-02
76	GO:0043039: tRNA aminoacylation	1.07E-02
77	GO:0006399: tRNA metabolic process	1.07E-02
78	GO:0006662: glycerol ether metabolic process	1.09E-02
79	GO:0009637: response to blue light	1.18E-02
80	GO:0015977: carbon fixation	1.27E-02
81	GO:0019761: glucosinolate biosynthetic process	1.27E-02
82	GO:0010114: response to red light	1.37E-02
83	GO:0009684: indoleacetic acid biosynthetic process	1.49E-02
84	GO:0010218: response to far red light	1.57E-02
85	GO:0045492: xylan biosynthetic process	1.96E-02
86	GO:0009612: response to mechanical stimulus	2.21E-02
87	GO:0019722: calcium-mediated signaling	2.21E-02
88	GO:0008033: tRNA processing	2.47E-02
89	GO:0051607: defense response to virus	2.47E-02
90	GO:0010228: vegetative to reproductive phase transition of meristem	2.53E-02
91	GO:0022900: electron transport chain	2.67E-02
92	GO:0042545: cell wall modification	3.02E-02
93	GO:0009657: plastid organization	3.32E-02
94	GO:0006631: fatty acid metabolic process	3.32E-02
95	GO:0006352: DNA-templated transcription, initiation	3.93E-02
96	GO:0046777: protein autophosphorylation	4.26E-02
97	GO:0009817: defense response to fungus, incompatible interaction	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0031409: pigment binding	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	0.00E+00
4	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
5	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
8	GO:0003735: structural constituent of ribosome	8.11E-08
9	GO:0019843: rRNA binding	8.47E-05
10	GO:0004812: aminoacyl-tRNA ligase activity	4.86E-04
11	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.10E-04
12	GO:0004828: serine-tRNA ligase activity	7.11E-04
13	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	7.11E-04
14	GO:0004831: tyrosine-tRNA ligase activity	7.11E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.11E-04
16	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.11E-04
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.14E-03
18	GO:0000049: tRNA binding	1.14E-03
19	GO:0004826: phenylalanine-tRNA ligase activity	1.64E-03
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.64E-03
21	GO:0045485: omega-6 fatty acid desaturase activity	1.64E-03
22	GO:0004825: methionine-tRNA ligase activity	2.71E-03
23	GO:0032549: ribonucleoside binding	2.71E-03
24	GO:0016209: antioxidant activity	4.01E-03
25	GO:0071949: FAD binding	4.01E-03
26	GO:0004332: fructose-bisphosphate aldolase activity	4.01E-03
27	GO:0004765: shikimate kinase activity	4.01E-03
28	GO:0016984: ribulose-bisphosphate carboxylase activity	4.01E-03
29	GO:0016168: chlorophyll binding	4.12E-03
30	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.46E-03
31	GO:0016987: sigma factor activity	5.46E-03
32	GO:0051537: 2 iron, 2 sulfur cluster binding	5.77E-03
33	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	8.84E-03
34	GO:0004252: serine-type endopeptidase activity	1.02E-02
35	GO:0008236: serine-type peptidase activity	1.18E-02
36	GO:0042578: phosphoric ester hydrolase activity	1.27E-02
37	GO:0004497: monooxygenase activity	2.18E-02
38	GO:0048038: quinone binding	2.74E-02
39	GO:0009055: electron carrier activity	2.94E-02
40	GO:0030145: manganese ion binding	3.32E-02
41	GO:0015035: protein disulfide oxidoreductase activity	3.74E-02
42	GO:0003723: RNA binding	3.93E-02
43	GO:0051536: iron-sulfur cluster binding	4.26E-02
44	GO:0031072: heat shock protein binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009507: chloroplast	2.33E-28
3	GO:0009570: chloroplast stroma	2.15E-23
4	GO:0009941: chloroplast envelope	6.11E-13
5	GO:0005840: ribosome	3.12E-11
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.15E-06
7	GO:0009535: chloroplast thylakoid membrane	1.22E-05
8	GO:0009579: thylakoid	2.46E-05
9	GO:0030529: intracellular ribonucleoprotein complex	3.02E-05
10	GO:0009543: chloroplast thylakoid lumen	1.78E-04
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	7.11E-04
12	GO:0000311: plastid large ribosomal subunit	7.11E-04
13	GO:0015934: large ribosomal subunit	2.01E-03
14	GO:0031977: thylakoid lumen	2.20E-03
15	GO:0055028: cortical microtubule	2.71E-03
16	GO:0005622: intracellular	2.88E-03
17	GO:0009523: photosystem II	1.01E-02
18	GO:0009536: plastid	1.32E-02
19	GO:0009295: nucleoid	1.96E-02
20	GO:0009534: chloroplast thylakoid	2.40E-02
21	GO:0009522: photosystem I	4.26E-02