co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G311919

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
2	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
3	GO:0043043: peptide biosynthetic process	0.00E+00
4	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
10	GO:1901259: chloroplast rRNA processing	0.00E+00
11	GO:0010028: xanthophyll cycle	0.00E+00
12	GO:0090342: regulation of cell aging	0.00E+00
13	GO:0032544: plastid translation	0.00E+00
14	GO:0010027: thylakoid membrane organization	1.66E-26
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.34E-25
16	GO:0010207: photosystem II assembly	4.48E-14
17	GO:0006364: rRNA processing	5.42E-14
18	GO:0009902: chloroplast relocation	1.08E-13
19	GO:0016226: iron-sulfur cluster assembly	3.47E-12
20	GO:0042793: transcription from plastid promoter	1.18E-11
21	GO:0006098: pentose-phosphate shunt	6.58E-11
22	GO:0006412: translation	2.75E-10
23	GO:0045036: protein targeting to chloroplast	3.88E-10
24	GO:0006655: phosphatidylglycerol biosynthetic process	8.10E-10
25	GO:0015995: chlorophyll biosynthetic process	1.44E-09
26	GO:0009658: chloroplast organization	6.97E-09
27	GO:0045038: protein import into chloroplast thylakoid membrane	2.38E-08
28	GO:0006636: unsaturated fatty acid biosynthetic process	7.31E-08
29	GO:0006546: glycine catabolic process	6.02E-07
30	GO:0009106: lipoate metabolic process	1.15E-06
31	GO:0006766: vitamin metabolic process	1.15E-06
32	GO:0009108: coenzyme biosynthetic process	1.15E-06
33	GO:0045893: positive regulation of transcription, DNA-templated	3.16E-06
34	GO:0009073: aromatic amino acid family biosynthetic process	6.93E-06
35	GO:0016117: carotenoid biosynthetic process	8.75E-06
36	GO:0035304: regulation of protein dephosphorylation	1.44E-05
37	GO:0009773: photosynthetic electron transport in photosystem I	1.44E-05
38	GO:0000096: sulfur amino acid metabolic process	1.51E-05
39	GO:0006569: tryptophan catabolic process	1.51E-05
40	GO:0019748: secondary metabolic process	1.51E-05
41	GO:0006418: tRNA aminoacylation for protein translation	2.96E-05
42	GO:0042372: phylloquinone biosynthetic process	5.12E-05
43	GO:0034660: ncRNA metabolic process	5.99E-05
44	GO:0006399: tRNA metabolic process	9.84E-05
45	GO:0030154: cell differentiation	1.05E-04
46	GO:0019761: glucosinolate biosynthetic process	1.29E-04
47	GO:0006733: oxidoreduction coenzyme metabolic process	1.67E-04
48	GO:0010103: stomatal complex morphogenesis	1.69E-04
49	GO:0009684: indoleacetic acid biosynthetic process	2.16E-04
50	GO:0048481: plant ovule development	2.37E-04
51	GO:0009695: jasmonic acid biosynthetic process	2.56E-04
52	GO:0006354: DNA-templated transcription, elongation	2.98E-04
53	GO:0009117: nucleotide metabolic process	3.49E-04
54	GO:0006779: porphyrin-containing compound biosynthetic process	3.93E-04
55	GO:0010228: vegetative to reproductive phase transition of meristem	5.53E-04
56	GO:0019344: cysteine biosynthetic process	8.77E-04
57	GO:0009306: protein secretion	9.06E-04
58	GO:0019684: photosynthesis, light reaction	1.15E-03
59	GO:0030003: cellular cation homeostasis	1.29E-03
60	GO:0009443: pyridoxal 5'-phosphate salvage	1.33E-03
61	GO:0008361: regulation of cell size	1.33E-03
62	GO:0006434: seryl-tRNA aminoacylation	1.33E-03
63	GO:0016050: vesicle organization	1.33E-03
64	GO:0006573: valine metabolic process	1.33E-03
65	GO:0006433: prolyl-tRNA aminoacylation	1.33E-03
66	GO:0032543: mitochondrial translation	1.33E-03
67	GO:0006423: cysteinyl-tRNA aminoacylation	1.33E-03
68	GO:0009069: serine family amino acid metabolic process	1.33E-03
69	GO:0071722: detoxification of arsenic-containing substance	1.33E-03
70	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.33E-03
71	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.21E-03
72	GO:0009072: aromatic amino acid family metabolic process	2.21E-03
73	GO:0009688: abscisic acid biosynthetic process	2.99E-03
74	GO:0048653: anther development	2.99E-03
75	GO:0044272: sulfur compound biosynthetic process	2.99E-03
76	GO:0019464: glycine decarboxylation via glycine cleavage system	2.99E-03
77	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.99E-03
78	GO:0006432: phenylalanyl-tRNA aminoacylation	2.99E-03
79	GO:0010109: regulation of photosynthesis	2.99E-03
80	GO:0010236: plastoquinone biosynthetic process	2.99E-03
81	GO:0016556: mRNA modification	3.44E-03
82	GO:0043085: positive regulation of catalytic activity	3.48E-03
83	GO:0009965: leaf morphogenesis	3.77E-03
84	GO:0009735: response to cytokinin	4.34E-03
85	GO:0006184: obsolete GTP catabolic process	4.93E-03
86	GO:0007186: G-protein coupled receptor signaling pathway	5.09E-03
87	GO:0010731: protein glutathionylation	5.09E-03
88	GO:0043067: regulation of programmed cell death	5.09E-03
89	GO:0009767: photosynthetic electron transport chain	5.88E-03
90	GO:0045454: cell redox homeostasis	6.13E-03
91	GO:0009793: embryo development ending in seed dormancy	7.07E-03
92	GO:0007389: pattern specification process	7.55E-03
93	GO:0006782: protoporphyrinogen IX biosynthetic process	7.55E-03
94	GO:0006165: nucleoside diphosphate phosphorylation	7.55E-03
95	GO:0019216: regulation of lipid metabolic process	7.55E-03
96	GO:0006228: UTP biosynthetic process	7.55E-03
97	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.55E-03
98	GO:0051205: protein insertion into membrane	7.55E-03
99	GO:0045037: protein import into chloroplast stroma	7.55E-03
100	GO:0006353: DNA-templated transcription, termination	7.55E-03
101	GO:0006183: GTP biosynthetic process	7.55E-03
102	GO:0006241: CTP biosynthetic process	7.55E-03
103	GO:0042545: cell wall modification	7.90E-03
104	GO:0000023: maltose metabolic process	8.38E-03
105	GO:0010155: regulation of proton transport	1.02E-02
106	GO:0009308: amine metabolic process	1.03E-02
107	GO:0070838: divalent metal ion transport	1.03E-02
108	GO:0006796: phosphate-containing compound metabolic process	1.03E-02
109	GO:0060416: response to growth hormone	1.03E-02
110	GO:0009772: photosynthetic electron transport in photosystem II	1.03E-02
111	GO:0015994: chlorophyll metabolic process	1.03E-02
112	GO:0006414: translational elongation	1.06E-02
113	GO:0046777: protein autophosphorylation	1.29E-02
114	GO:0008652: cellular amino acid biosynthetic process	1.33E-02
115	GO:0007005: mitochondrion organization	1.34E-02
116	GO:0009913: epidermal cell differentiation	1.34E-02
117	GO:0015979: photosynthesis	1.42E-02
118	GO:0006200: obsolete ATP catabolic process	1.63E-02
119	GO:0010583: response to cyclopentenone	1.67E-02
120	GO:0010206: photosystem II repair	1.67E-02
121	GO:0009926: auxin polar transport	1.67E-02
122	GO:0009704: de-etiolation	1.67E-02
123	GO:0009411: response to UV	1.67E-02
124	GO:0009814: defense response, incompatible interaction	1.67E-02
125	GO:0042742: defense response to bacterium	1.75E-02
126	GO:0015693: magnesium ion transport	2.04E-02
127	GO:0043039: tRNA aminoacylation	2.04E-02
128	GO:0030245: cellulose catabolic process	2.04E-02
129	GO:0040007: growth	2.43E-02
130	GO:0010015: root morphogenesis	2.43E-02
131	GO:0009585: red, far-red light phototransduction	2.43E-02
132	GO:0006662: glycerol ether metabolic process	2.72E-02
133	GO:0009407: toxin catabolic process	2.84E-02
134	GO:0009832: plant-type cell wall biogenesis	2.84E-02
135	GO:0009567: double fertilization forming a zygote and endosperm	3.28E-02
136	GO:0048527: lateral root development	3.28E-02
137	GO:0009697: salicylic acid biosynthetic process	3.28E-02
138	GO:0019252: starch biosynthetic process	3.39E-02
139	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.74E-02
140	GO:0006974: cellular response to DNA damage stimulus	3.74E-02
141	GO:0009765: photosynthesis, light harvesting	3.74E-02
142	GO:0008033: tRNA processing	4.72E-02
143	GO:0031408: oxylipin biosynthetic process	4.72E-02
144	GO:0051607: defense response to virus	4.72E-02
145	GO:0048316: seed development	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
3	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
8	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
9	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
11	GO:0003735: structural constituent of ribosome	6.40E-09
12	GO:0004812: aminoacyl-tRNA ligase activity	4.20E-05
13	GO:0004765: shikimate kinase activity	3.49E-04
14	GO:0015035: protein disulfide oxidoreductase activity	1.19E-03
15	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.33E-03
16	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.33E-03
17	GO:0004831: tyrosine-tRNA ligase activity	1.33E-03
18	GO:0070402: NADPH binding	1.33E-03
19	GO:0004817: cysteine-tRNA ligase activity	1.33E-03
20	GO:0034256: chlorophyll(ide) b reductase activity	1.33E-03
21	GO:0004827: proline-tRNA ligase activity	1.33E-03
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.33E-03
23	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.33E-03
24	GO:0004828: serine-tRNA ligase activity	1.33E-03
25	GO:0008312: 7S RNA binding	1.73E-03
26	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.77E-03
27	GO:0000049: tRNA binding	2.77E-03
28	GO:0004826: phenylalanine-tRNA ligase activity	2.99E-03
29	GO:0004853: uroporphyrinogen decarboxylase activity	2.99E-03
30	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.99E-03
31	GO:0019843: rRNA binding	3.07E-03
32	GO:0009055: electron carrier activity	3.22E-03
33	GO:0033897: ribonuclease T2 activity	5.09E-03
34	GO:0003746: translation elongation factor activity	7.06E-03
35	GO:0004550: nucleoside diphosphate kinase activity	7.55E-03
36	GO:0016209: antioxidant activity	7.55E-03
37	GO:0003913: DNA photolyase activity	7.55E-03
38	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	7.55E-03
39	GO:0070569: uridylyltransferase activity	7.55E-03
40	GO:0004659: prenyltransferase activity	7.55E-03
41	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.55E-03
42	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.03E-02
43	GO:0016987: sigma factor activity	1.03E-02
44	GO:0008565: protein transporter activity	1.44E-02
45	GO:0008810: cellulase activity	1.67E-02
46	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.67E-02
47	GO:0003723: RNA binding	2.03E-02
48	GO:0043022: ribosome binding	2.04E-02
49	GO:0005525: GTP binding	2.15E-02
50	GO:0004427: inorganic diphosphatase activity	2.43E-02
51	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.84E-02
52	GO:0015095: magnesium ion transmembrane transporter activity	2.84E-02
53	GO:0046873: metal ion transmembrane transporter activity	2.84E-02
54	GO:0016887: ATPase activity	3.07E-02
55	GO:0003924: GTPase activity	3.64E-02

Rank	GO Term	Adjusted P value
1	GO:0031361: integral component of thylakoid membrane	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	2.50E-48
4	GO:0009570: chloroplast stroma	2.18E-35
5	GO:0009941: chloroplast envelope	2.15E-20
6	GO:0009535: chloroplast thylakoid membrane	1.03E-13
7	GO:0005840: ribosome	1.47E-12
8	GO:0009579: thylakoid	9.07E-08
9	GO:0009534: chloroplast thylakoid	4.57E-07
10	GO:0009543: chloroplast thylakoid lumen	1.65E-06
11	GO:0030529: intracellular ribonucleoprotein complex	4.15E-06
12	GO:0009295: nucleoid	2.08E-05
13	GO:0005622: intracellular	3.45E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.06E-04
15	GO:0048500: signal recognition particle	1.29E-03
16	GO:0009527: plastid outer membrane	1.33E-03
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.33E-03
18	GO:0005960: glycine cleavage complex	1.33E-03
19	GO:0080085: signal recognition particle, chloroplast targeting	1.33E-03
20	GO:0009528: plastid inner membrane	1.33E-03
21	GO:0000311: plastid large ribosomal subunit	1.33E-03
22	GO:0055028: cortical microtubule	5.09E-03
23	GO:0042651: thylakoid membrane	5.88E-03
24	GO:0015934: large ribosomal subunit	6.44E-03
25	GO:0031977: thylakoid lumen	7.06E-03
26	GO:0009840: chloroplastic endopeptidase Clp complex	1.03E-02
27	GO:0009508: plastid chromosome	1.03E-02
28	GO:0019013: viral nucleocapsid	1.29E-02
29	GO:0031225: anchored component of membrane	1.34E-02
30	GO:0009532: plastid stroma	2.04E-02
31	GO:0009523: photosystem II	2.51E-02