Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G300348

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051188: cofactor biosynthetic process0.00E+00
2GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly0.00E+00
3GO:0010028: xanthophyll cycle0.00E+00
4GO:0015995: chlorophyll biosynthetic process5.83E-09
5GO:0006098: pentose-phosphate shunt1.25E-07
6GO:0010206: photosystem II repair2.88E-07
7GO:0009416: response to light stimulus1.78E-06
8GO:0016117: carotenoid biosynthetic process2.10E-06
9GO:0019761: glucosinolate biosynthetic process2.48E-06
10GO:0015979: photosynthesis4.60E-06
11GO:0000096: sulfur amino acid metabolic process1.62E-05
12GO:0010207: photosystem II assembly2.06E-05
13GO:0009108: coenzyme biosynthetic process4.14E-05
14GO:0009106: lipoate metabolic process4.14E-05
15GO:0006766: vitamin metabolic process4.14E-05
16GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.02E-05
17GO:0009072: aromatic amino acid family metabolic process8.05E-05
18GO:0000023: maltose metabolic process1.27E-04
19GO:0016556: mRNA modification1.34E-04
20GO:0006546: glycine catabolic process1.67E-04
21GO:0006364: rRNA processing2.00E-04
22GO:0009767: photosynthetic electron transport chain2.44E-04
23GO:0006636: unsaturated fatty acid biosynthetic process2.88E-04
24GO:0009642: response to light intensity3.52E-04
25GO:0044272: sulfur compound biosynthetic process3.52E-04
26GO:0006875: cellular metal ion homeostasis3.52E-04
27GO:0019684: photosynthesis, light reaction3.87E-04
28GO:0010155: regulation of proton transport4.42E-04
29GO:0010103: stomatal complex morphogenesis5.01E-04
30GO:0009773: photosynthetic electron transport in photosystem I5.63E-04
31GO:0010027: thylakoid membrane organization5.79E-04
32GO:0019252: starch biosynthetic process6.13E-04
33GO:0009695: jasmonic acid biosynthetic process6.28E-04
34GO:0006014: D-ribose metabolic process8.95E-04
35GO:0006782: protoporphyrinogen IX biosynthetic process8.95E-04
36GO:0019216: regulation of lipid metabolic process8.95E-04
37GO:0045037: protein import into chloroplast stroma8.95E-04
38GO:0080167: response to karrikin9.11E-04
39GO:0009902: chloroplast relocation9.34E-04
40GO:0000413: protein peptidyl-prolyl isomerization9.34E-04
41GO:0070838: divalent metal ion transport1.22E-03
42GO:0006796: phosphate-containing compound metabolic process1.22E-03
43GO:0050790: regulation of catalytic activity1.22E-03
44GO:0009813: flavonoid biosynthetic process1.22E-03
45GO:0034755: iron ion transmembrane transport1.22E-03
46GO:0019748: secondary metabolic process1.22E-03
47GO:0015994: chlorophyll metabolic process1.22E-03
48GO:0009637: response to blue light1.30E-03
49GO:0010114: response to red light1.51E-03
50GO:0006783: heme biosynthetic process1.57E-03
51GO:0010218: response to far red light1.73E-03
52GO:0033014: tetrapyrrole biosynthetic process1.94E-03
53GO:0034660: ncRNA metabolic process1.94E-03
54GO:0030003: cellular cation homeostasis1.94E-03
55GO:0009411: response to UV1.94E-03
56GO:0055114: oxidation-reduction process1.99E-03
57GO:0008652: cellular amino acid biosynthetic process2.59E-03
58GO:0009644: response to high light intensity2.73E-03
59GO:0022900: electron transport chain2.88E-03
60GO:0043085: positive regulation of catalytic activity3.03E-03
61GO:0009765: photosynthesis, light harvesting4.18E-03
62GO:0006779: porphyrin-containing compound biosynthetic process4.18E-03
63GO:0046854: phosphatidylinositol phosphorylation4.70E-03
64GO:0006655: phosphatidylglycerol biosynthetic process5.23E-03
65GO:0031408: oxylipin biosynthetic process5.23E-03
66GO:0042793: transcription from plastid promoter5.23E-03
67GO:0030154: cell differentiation7.00E-03
68GO:0009657: plastid organization7.00E-03
69GO:0006631: fatty acid metabolic process7.00E-03
70GO:0018298: protein-chromophore linkage7.62E-03
71GO:0046777: protein autophosphorylation8.93E-03
72GO:0010224: response to UV-B8.93E-03
73GO:0009817: defense response to fungus, incompatible interaction9.61E-03
74GO:0006096: glycolytic process1.04E-02
75GO:0009744: response to sucrose2.29E-02
76GO:0009965: leaf morphogenesis2.99E-02
77GO:0006457: protein folding3.00E-02
78GO:0045893: positive regulation of transcription, DNA-templated3.65E-02
79GO:0006979: response to oxidative stress4.27E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0045550: geranylgeranyl reductase activity0.00E+00
3GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
4GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
5GO:0004802: transketolase activity0.00E+00
6GO:0031679: NADH dehydrogenase (plastoquinone) activity0.00E+00
7GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.28E-06
8GO:0008883: glutamyl-tRNA reductase activity1.43E-04
9GO:0004618: phosphoglycerate kinase activity1.43E-04
10GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.43E-04
11GO:0015088: copper uptake transmembrane transporter activity1.43E-04
12GO:0045430: chalcone isomerase activity3.52E-04
13GO:0051920: peroxiredoxin activity3.52E-04
14GO:0016872: intramolecular lyase activity6.05E-04
15GO:0051537: 2 iron, 2 sulfur cluster binding6.28E-04
16GO:0016209: antioxidant activity8.95E-04
17GO:0071949: FAD binding8.95E-04
18GO:0004332: fructose-bisphosphate aldolase activity8.95E-04
19GO:0004747: ribokinase activity8.95E-04
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.11E-03
21GO:0030234: enzyme regulator activity1.22E-03
22GO:0005381: iron ion transmembrane transporter activity1.22E-03
23GO:0004427: inorganic diphosphatase activity2.73E-03
24GO:0046914: transition metal ion binding3.68E-03
25GO:0043531: ADP binding4.18E-03
26GO:0051536: iron-sulfur cluster binding4.65E-03
27GO:0004713: protein tyrosine kinase activity6.38E-03
28GO:0008080: N-acetyltransferase activity7.00E-03
29GO:0016168: chlorophyll binding7.62E-03
30GO:0009055: electron carrier activity1.40E-02
31GO:0016773: phosphotransferase activity, alcohol group as acceptor1.65E-02
32GO:0050661: NADP binding2.38E-02
33GO:0042803: protein homodimerization activity2.89E-02
34GO:0004252: serine-type endopeptidase activity4.24E-02
RankGO TermAdjusted P value
1GO:0009512: cytochrome b6f complex0.00E+00
2GO:0009535: chloroplast thylakoid membrane1.92E-16
3GO:0009507: chloroplast2.85E-15
4GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.82E-13
5GO:0009543: chloroplast thylakoid lumen3.77E-10
6GO:0009579: thylakoid4.09E-08
7GO:0009534: chloroplast thylakoid2.74E-07
8GO:0009941: chloroplast envelope4.30E-07
9GO:0031977: thylakoid lumen3.39E-06
10GO:0009570: chloroplast stroma4.31E-05
11GO:0042406: extrinsic component of endoplasmic reticulum membrane1.43E-04
12GO:0010287: plastoglobule2.16E-04
13GO:0009533: chloroplast stromal thylakoid3.52E-04
14GO:0009523: photosystem II1.11E-03
15GO:0009508: plastid chromosome1.22E-03
16GO:0010319: stromule1.51E-03
17GO:0009295: nucleoid4.18E-03
18GO:0009522: photosystem I8.93E-03
19GO:0009706: chloroplast inner membrane1.10E-02
20GO:0048046: apoplast1.38E-02
21GO:0009705: plant-type vacuole membrane1.65E-02