co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G178460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042780: tRNA 3'-end processing	0.00E+00
2	GO:0010157: response to chlorate	0.00E+00
3	GO:0090391: granum assembly	0.00E+00
4	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
8	GO:0006457: protein folding	1.09E-09
9	GO:0009658: chloroplast organization	2.20E-09
10	GO:1901671: positive regulation of superoxide dismutase activity	1.39E-05
11	GO:0042026: protein refolding	1.08E-04
12	GO:0045037: protein import into chloroplast stroma	1.08E-04
13	GO:0006353: DNA-templated transcription, termination	1.08E-04
14	GO:0042793: transcription from plastid promoter	1.43E-04
15	GO:0010468: regulation of gene expression	1.92E-04
16	GO:0044267: cellular protein metabolic process	3.29E-04
17	GO:0019538: protein metabolic process	4.35E-04
18	GO:0010587: miRNA catabolic process	6.44E-04
19	GO:0009968: negative regulation of signal transduction	6.44E-04
20	GO:0006591: ornithine metabolic process	6.44E-04
21	GO:0043157: response to cation stress	6.44E-04
22	GO:0018160: peptidyl-pyrromethane cofactor linkage	6.44E-04
23	GO:0032543: mitochondrial translation	6.44E-04
24	GO:0080141: regulation of jasmonic acid biosynthetic process	6.44E-04
25	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.44E-04
26	GO:0051512: positive regulation of unidimensional cell growth	6.44E-04
27	GO:0009902: chloroplast relocation	8.99E-04
28	GO:0009102: biotin biosynthetic process	1.49E-03
29	GO:0009642: response to light intensity	1.49E-03
30	GO:0010380: regulation of chlorophyll biosynthetic process	1.49E-03
31	GO:0019481: L-alanine catabolic process, by transamination	1.49E-03
32	GO:0009081: branched-chain amino acid metabolic process	1.49E-03
33	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.40E-03
34	GO:0006450: regulation of translational fidelity	2.46E-03
35	GO:0051085: chaperone mediated protein folding requiring cofactor	2.46E-03
36	GO:0000304: response to singlet oxygen	2.46E-03
37	GO:0000373: Group II intron splicing	3.63E-03
38	GO:0006790: sulfur compound metabolic process	3.63E-03
39	GO:0006401: RNA catabolic process	3.63E-03
40	GO:0045038: protein import into chloroplast thylakoid membrane	3.63E-03
41	GO:0009627: systemic acquired resistance	4.02E-03
42	GO:0006508: proteolysis	4.34E-03
43	GO:0035304: regulation of protein dephosphorylation	4.51E-03
44	GO:0006081: cellular aldehyde metabolic process	4.96E-03
45	GO:0006364: rRNA processing	5.77E-03
46	GO:0006102: isocitrate metabolic process	6.40E-03
47	GO:0006749: glutathione metabolic process	6.40E-03
48	GO:0031347: regulation of defense response	6.40E-03
49	GO:0045893: positive regulation of transcription, DNA-templated	6.52E-03
50	GO:0009408: response to heat	7.69E-03
51	GO:0033014: tetrapyrrole biosynthetic process	7.99E-03
52	GO:0006189: 'de novo' IMP biosynthetic process	7.99E-03
53	GO:0010206: photosystem II repair	7.99E-03
54	GO:0032880: regulation of protein localization	7.99E-03
55	GO:0009704: de-etiolation	7.99E-03
56	GO:0010027: thylakoid membrane organization	8.55E-03
57	GO:0006950: response to stress	9.63E-03
58	GO:0009628: response to abiotic stimulus	9.71E-03
59	GO:0051604: protein maturation	9.71E-03
60	GO:0019344: cysteine biosynthetic process	1.02E-02
61	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.15E-02
62	GO:0045087: innate immune response	1.15E-02
63	GO:0001666: response to hypoxia	1.15E-02
64	GO:0009407: toxin catabolic process	1.35E-02
65	GO:0000302: response to reactive oxygen species	1.35E-02
66	GO:0016556: mRNA modification	1.55E-02
67	GO:0006184: obsolete GTP catabolic process	1.68E-02
68	GO:0009409: response to cold	1.79E-02
69	GO:0046854: phosphatidylinositol phosphorylation	2.00E-02
70	GO:0015995: chlorophyll biosynthetic process	2.08E-02
71	GO:0031408: oxylipin biosynthetic process	2.23E-02
72	GO:0051607: defense response to virus	2.23E-02
73	GO:0048316: seed development	2.23E-02
74	GO:0006655: phosphatidylglycerol biosynthetic process	2.23E-02
75	GO:0006261: DNA-dependent DNA replication	2.73E-02
76	GO:0010207: photosystem II assembly	2.96E-02
77	GO:0030154: cell differentiation	3.00E-02
78	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.27E-02
79	GO:0008219: cell death	3.27E-02
80	GO:0010155: regulation of proton transport	3.27E-02
81	GO:0010267: production of ta-siRNAs involved in RNA interference	3.27E-02
82	GO:0009058: biosynthetic process	3.59E-02
83	GO:0006139: nucleobase-containing compound metabolic process	3.84E-02
84	GO:0046777: protein autophosphorylation	3.84E-02
85	GO:0071555: cell wall organization	4.02E-02
86	GO:0009416: response to light stimulus	4.18E-02
87	GO:0009738: abscisic acid-activated signaling pathway	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
4	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
5	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
6	GO:0004252: serine-type endopeptidase activity	2.79E-05
7	GO:0000774: adenyl-nucleotide exchange factor activity	4.90E-05
8	GO:0051087: chaperone binding	5.92E-04
9	GO:0004362: glutathione-disulfide reductase activity	6.44E-04
10	GO:0004585: ornithine carbamoyltransferase activity	6.44E-04
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.44E-04
12	GO:0004418: hydroxymethylbilane synthase activity	6.44E-04
13	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.44E-04
14	GO:0042803: protein homodimerization activity	6.69E-04
15	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.88E-04
16	GO:0046914: transition metal ion binding	1.22E-03
17	GO:0052655: L-valine transaminase activity	1.49E-03
18	GO:0004084: branched-chain-amino-acid transaminase activity	1.49E-03
19	GO:0052654: L-leucine transaminase activity	1.49E-03
20	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.49E-03
21	GO:0019204: obsolete nucleotide phosphatase activity	1.49E-03
22	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.49E-03
23	GO:0052656: L-isoleucine transaminase activity	1.49E-03
24	GO:0016743: carboxyl- or carbamoyltransferase activity	2.46E-03
25	GO:0051082: unfolded protein binding	3.14E-03
26	GO:0005507: copper ion binding	3.57E-03
27	GO:0004659: prenyltransferase activity	3.63E-03
28	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	3.63E-03
29	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.63E-03
30	GO:0031072: heat shock protein binding	5.01E-03
31	GO:0008233: peptidase activity	7.92E-03
32	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	7.99E-03
33	GO:0003887: DNA-directed DNA polymerase activity	9.71E-03
34	GO:0008408: 3'-5' exonuclease activity	1.15E-02
35	GO:0008266: poly(U) RNA binding	1.15E-02
36	GO:0003690: double-stranded DNA binding	1.77E-02
37	GO:0016760: cellulose synthase (UDP-forming) activity	2.48E-02
38	GO:0004650: polygalacturonase activity	2.48E-02
39	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.00E-02
40	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.10E-02
41	GO:0051536: iron-sulfur cluster binding	3.70E-02
42	GO:0051537: 2 iron, 2 sulfur cluster binding	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0019867: outer membrane	0.00E+00
4	GO:0009941: chloroplast envelope	1.31E-14
5	GO:0009570: chloroplast stroma	2.00E-12
6	GO:0009507: chloroplast	6.40E-12
7	GO:0009532: plastid stroma	2.01E-09
8	GO:0009535: chloroplast thylakoid membrane	6.39E-06
9	GO:0009579: thylakoid	9.41E-05
10	GO:0009840: chloroplastic endopeptidase Clp complex	1.92E-04
11	GO:0009707: chloroplast outer membrane	1.92E-04
12	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.44E-04
13	GO:0009526: plastid envelope	6.44E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	6.44E-04
15	GO:0009533: chloroplast stromal thylakoid	1.49E-03
16	GO:0009534: chloroplast thylakoid	3.45E-03
17	GO:0005759: mitochondrial matrix	7.37E-03
18	GO:0005739: mitochondrion	8.53E-03
19	GO:0009536: plastid	1.03E-02
20	GO:0010319: stromule	1.18E-02
21	GO:0048046: apoplast	2.26E-02
22	GO:0009706: chloroplast inner membrane	4.76E-02