co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G176604

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010117: photoprotection	0.00E+00
2	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
3	GO:0090391: granum assembly	0.00E+00
4	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
5	GO:0009658: chloroplast organization	2.42E-10
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.28E-05
7	GO:0045037: protein import into chloroplast stroma	5.69E-05
8	GO:0006353: DNA-templated transcription, termination	5.69E-05
9	GO:0042793: transcription from plastid promoter	6.24E-05
10	GO:0010027: thylakoid membrane organization	7.79E-05
11	GO:0015995: chlorophyll biosynthetic process	2.00E-04
12	GO:0035304: regulation of protein dephosphorylation	2.12E-04
13	GO:0033014: tetrapyrrole biosynthetic process	2.42E-04
14	GO:0010206: photosystem II repair	2.42E-04
15	GO:0019538: protein metabolic process	2.42E-04
16	GO:0009902: chloroplast relocation	4.31E-04
17	GO:0006433: prolyl-tRNA aminoacylation	4.39E-04
18	GO:0032543: mitochondrial translation	4.39E-04
19	GO:0080141: regulation of jasmonic acid biosynthetic process	4.39E-04
20	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	4.39E-04
21	GO:0006430: lysyl-tRNA aminoacylation	4.39E-04
22	GO:0051512: positive regulation of unidimensional cell growth	4.39E-04
23	GO:0010587: miRNA catabolic process	4.39E-04
24	GO:0009968: negative regulation of signal transduction	4.39E-04
25	GO:0015805: S-adenosyl-L-methionine transport	4.39E-04
26	GO:1901962: S-adenosyl-L-methionine transmembrane transport	4.39E-04
27	GO:0006788: heme oxidation	4.39E-04
28	GO:0043157: response to cation stress	4.39E-04
29	GO:0006457: protein folding	5.48E-04
30	GO:0006779: porphyrin-containing compound biosynthetic process	8.52E-04
31	GO:0051555: flavonol biosynthetic process	1.03E-03
32	GO:0019481: L-alanine catabolic process, by transamination	1.03E-03
33	GO:0010109: regulation of photosynthesis	1.03E-03
34	GO:0010024: phytochromobilin biosynthetic process	1.03E-03
35	GO:0010380: regulation of chlorophyll biosynthetic process	1.03E-03
36	GO:0044272: sulfur compound biosynthetic process	1.03E-03
37	GO:1901671: positive regulation of superoxide dismutase activity	1.03E-03
38	GO:0006655: phosphatidylglycerol biosynthetic process	1.21E-03
39	GO:0031408: oxylipin biosynthetic process	1.21E-03
40	GO:0006633: fatty acid biosynthetic process	1.23E-03
41	GO:0030497: fatty acid elongation	1.73E-03
42	GO:0009247: glycolipid biosynthetic process	1.73E-03
43	GO:0015867: ATP transport	1.73E-03
44	GO:0000304: response to singlet oxygen	1.73E-03
45	GO:0006571: tyrosine biosynthetic process	1.73E-03
46	GO:0006450: regulation of translational fidelity	1.73E-03
47	GO:0006733: oxidoreduction coenzyme metabolic process	1.73E-03
48	GO:0009117: nucleotide metabolic process	2.49E-03
49	GO:0019375: galactolipid biosynthetic process	2.49E-03
50	GO:0006401: RNA catabolic process	2.49E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	2.49E-03
52	GO:0030259: lipid glycosylation	2.49E-03
53	GO:0019216: regulation of lipid metabolic process	2.49E-03
54	GO:0006790: sulfur compound metabolic process	2.49E-03
55	GO:0009695: jasmonic acid biosynthetic process	2.89E-03
56	GO:0045893: positive regulation of transcription, DNA-templated	3.22E-03
57	GO:0009813: flavonoid biosynthetic process	3.39E-03
58	GO:0019748: secondary metabolic process	3.39E-03
59	GO:0010468: regulation of gene expression	3.39E-03
60	GO:0000096: sulfur amino acid metabolic process	3.39E-03
61	GO:0010072: primary shoot apical meristem specification	3.39E-03
62	GO:0006081: cellular aldehyde metabolic process	3.39E-03
63	GO:0006508: proteolysis	3.64E-03
64	GO:0009416: response to light stimulus	4.25E-03
65	GO:0031347: regulation of defense response	4.40E-03
66	GO:0032880: regulation of protein localization	5.46E-03
67	GO:0006032: chitin catabolic process	5.46E-03
68	GO:0006766: vitamin metabolic process	5.46E-03
69	GO:0009108: coenzyme biosynthetic process	5.46E-03
70	GO:0009106: lipoate metabolic process	5.46E-03
71	GO:0010205: photoinhibition	5.46E-03
72	GO:0019344: cysteine biosynthetic process	5.91E-03
73	GO:0016117: carotenoid biosynthetic process	5.91E-03
74	GO:0009628: response to abiotic stimulus	6.63E-03
75	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.88E-03
76	GO:0045087: innate immune response	7.88E-03
77	GO:0001666: response to hypoxia	7.88E-03
78	GO:0009072: aromatic amino acid family metabolic process	7.88E-03
79	GO:0006418: tRNA aminoacylation for protein translation	8.96E-03
80	GO:0000302: response to reactive oxygen species	9.20E-03
81	GO:0006546: glycine catabolic process	1.20E-02
82	GO:0006364: rRNA processing	1.23E-02
83	GO:0016998: cell wall macromolecule catabolic process	1.36E-02
84	GO:0046854: phosphatidylinositol phosphorylation	1.36E-02
85	GO:0048316: seed development	1.52E-02
86	GO:0010207: photosystem II assembly	1.72E-02
87	GO:0006952: defense response	1.88E-02
88	GO:0019684: photosynthesis, light reaction	2.04E-02
89	GO:0030154: cell differentiation	2.04E-02
90	GO:0044267: cellular protein metabolic process	2.22E-02
91	GO:0010155: regulation of proton transport	2.22E-02
92	GO:0008610: lipid biosynthetic process	2.22E-02
93	GO:0006352: DNA-templated transcription, initiation	2.41E-02
94	GO:0009627: systemic acquired resistance	2.41E-02
95	GO:0009793: embryo development ending in seed dormancy	2.48E-02
96	GO:0046777: protein autophosphorylation	2.61E-02
97	GO:0048367: shoot system development	2.81E-02
98	GO:0009553: embryo sac development	2.81E-02
99	GO:0009620: response to fungus	2.81E-02
100	GO:0009738: abscisic acid-activated signaling pathway	3.02E-02
101	GO:0006098: pentose-phosphate shunt	3.16E-02
102	GO:0042254: ribosome biogenesis	3.23E-02
103	GO:0080167: response to karrikin	3.39E-02
104	GO:0009933: meristem structural organization	3.68E-02
105	GO:0030163: protein catabolic process	3.91E-02
106	GO:0009735: response to cytokinin	4.14E-02
107	GO:0048573: photoperiodism, flowering	4.14E-02
108	GO:0009073: aromatic amino acid family biosynthetic process	4.38E-02
109	GO:0042742: defense response to bacterium	4.40E-02
110	GO:0009637: response to blue light	4.62E-02
111	GO:0009790: embryo development	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
2	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
3	GO:0045431: flavonol synthase activity	0.00E+00
4	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
5	GO:0046408: chlorophyll synthetase activity	0.00E+00
6	GO:0004252: serine-type endopeptidase activity	5.94E-06
7	GO:0000774: adenyl-nucleotide exchange factor activity	2.51E-05
8	GO:0051087: chaperone binding	3.35E-04
9	GO:0004824: lysine-tRNA ligase activity	4.39E-04
10	GO:0004827: proline-tRNA ligase activity	4.39E-04
11	GO:0003989: acetyl-CoA carboxylase activity	4.39E-04
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.39E-04
13	GO:0016851: magnesium chelatase activity	4.39E-04
14	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.39E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.39E-04
16	GO:0035250: UDP-galactosyltransferase activity	4.39E-04
17	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	4.39E-04
18	GO:0031177: phosphopantetheine binding	4.39E-04
19	GO:0008194: UDP-glycosyltransferase activity	4.39E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.39E-04
21	GO:0043531: ADP binding	8.52E-04
22	GO:0019204: obsolete nucleotide phosphatase activity	1.03E-03
23	GO:0005347: ATP transmembrane transporter activity	1.03E-03
24	GO:0004075: biotin carboxylase activity	1.03E-03
25	GO:0045485: omega-6 fatty acid desaturase activity	1.03E-03
26	GO:0004392: heme oxygenase (decyclizing) activity	1.03E-03
27	GO:0051920: peroxiredoxin activity	1.03E-03
28	GO:0008977: prephenate dehydrogenase (NAD+) activity	1.03E-03
29	GO:0004665: prephenate dehydrogenase (NADP+) activity	1.03E-03
30	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	2.49E-03
31	GO:0016209: antioxidant activity	2.49E-03
32	GO:0004659: prenyltransferase activity	2.49E-03
33	GO:0016987: sigma factor activity	3.39E-03
34	GO:0004568: chitinase activity	5.46E-03
35	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.46E-03
36	GO:0008266: poly(U) RNA binding	7.88E-03
37	GO:0004812: aminoacyl-tRNA ligase activity	1.01E-02
38	GO:0046914: transition metal ion binding	1.06E-02
39	GO:0008233: peptidase activity	1.19E-02
40	GO:0048037: cofactor binding	1.20E-02
41	GO:0042803: protein homodimerization activity	1.41E-02
42	GO:0016746: transferase activity, transferring acyl groups	1.64E-02
43	GO:0016760: cellulose synthase (UDP-forming) activity	1.68E-02
44	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.80E-02
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.04E-02
46	GO:0019843: rRNA binding	3.45E-02
47	GO:0042802: identical protein binding	3.91E-02
48	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.38E-02
49	GO:0008236: serine-type peptidase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	1.42E-18
2	GO:0009507: chloroplast	2.65E-16
3	GO:0009570: chloroplast stroma	9.19E-13
4	GO:0009532: plastid stroma	7.40E-08
5	GO:0009840: chloroplastic endopeptidase Clp complex	9.73E-07
6	GO:0009536: plastid	3.04E-05
7	GO:0009706: chloroplast inner membrane	3.32E-04
8	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.39E-04
9	GO:0009526: plastid envelope	4.39E-04
10	GO:0080085: signal recognition particle, chloroplast targeting	4.39E-04
11	GO:0009533: chloroplast stromal thylakoid	1.03E-03
12	GO:0009534: chloroplast thylakoid	1.73E-03
13	GO:0009579: thylakoid	2.70E-03
14	GO:0009535: chloroplast thylakoid membrane	2.82E-03
15	GO:0005759: mitochondrial matrix	4.27E-03
16	GO:0010319: stromule	6.86E-03
17	GO:0042651: thylakoid membrane	1.52E-02