co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G173923

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900865: chloroplast RNA modification	0.00E+00
2	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043686: co-translational protein modification	0.00E+00
5	GO:0090391: granum assembly	0.00E+00
6	GO:0048564: photosystem I assembly	0.00E+00
7	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0010337: regulation of salicylic acid metabolic process	0.00E+00
10	GO:0046506: sulfolipid biosynthetic process	0.00E+00
11	GO:1901259: chloroplast rRNA processing	0.00E+00
12	GO:0009306: protein secretion	7.29E-10
13	GO:0010027: thylakoid membrane organization	9.95E-07
14	GO:0006457: protein folding	1.86E-06
15	GO:0009658: chloroplast organization	6.72E-06
16	GO:0045036: protein targeting to chloroplast	1.03E-05
17	GO:0006399: tRNA metabolic process	4.29E-05
18	GO:0010207: photosystem II assembly	4.38E-05
19	GO:0006364: rRNA processing	1.47E-04
20	GO:0006779: porphyrin-containing compound biosynthetic process	1.85E-04
21	GO:0006782: protoporphyrinogen IX biosynthetic process	1.95E-04
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.13E-04
23	GO:0006655: phosphatidylglycerol biosynthetic process	3.08E-04
24	GO:0010103: stomatal complex morphogenesis	7.94E-04
25	GO:0006429: leucyl-tRNA aminoacylation	9.28E-04
26	GO:0006591: ornithine metabolic process	9.28E-04
27	GO:0009959: negative gravitropism	9.28E-04
28	GO:0032543: mitochondrial translation	9.28E-04
29	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	9.28E-04
30	GO:0015995: chlorophyll biosynthetic process	1.20E-03
31	GO:0009407: toxin catabolic process	1.67E-03
32	GO:0043255: regulation of carbohydrate biosynthetic process	2.10E-03
33	GO:0009688: abscisic acid biosynthetic process	2.10E-03
34	GO:0009642: response to light intensity	2.10E-03
35	GO:0005987: sucrose catabolic process	2.10E-03
36	GO:0010380: regulation of chlorophyll biosynthetic process	2.10E-03
37	GO:1901671: positive regulation of superoxide dismutase activity	2.10E-03
38	GO:0019464: glycine decarboxylation via glycine cleavage system	2.10E-03
39	GO:0030308: negative regulation of cell growth	2.10E-03
40	GO:0009735: response to cytokinin	2.20E-03
41	GO:0009073: aromatic amino acid family biosynthetic process	2.43E-03
42	GO:0006546: glycine catabolic process	2.45E-03
43	GO:0045893: positive regulation of transcription, DNA-templated	2.57E-03
44	GO:0042793: transcription from plastid promoter	3.45E-03
45	GO:0051607: defense response to virus	3.45E-03
46	GO:0006450: regulation of translational fidelity	3.53E-03
47	GO:0006733: oxidoreduction coenzyme metabolic process	3.53E-03
48	GO:0051085: chaperone mediated protein folding requiring cofactor	3.53E-03
49	GO:0010731: protein glutathionylation	3.53E-03
50	GO:0016075: rRNA catabolic process	3.53E-03
51	GO:0043067: regulation of programmed cell death	3.53E-03
52	GO:0009231: riboflavin biosynthetic process	3.53E-03
53	GO:0009247: glycolipid biosynthetic process	3.53E-03
54	GO:0019760: glucosinolate metabolic process	3.53E-03
55	GO:0000304: response to singlet oxygen	3.53E-03
56	GO:0016226: iron-sulfur cluster assembly	3.57E-03
57	GO:0019252: starch biosynthetic process	3.82E-03
58	GO:0008299: isoprenoid biosynthetic process	4.02E-03
59	GO:0000023: maltose metabolic process	4.26E-03
60	GO:0042026: protein refolding	5.22E-03
61	GO:0071704: organic substance metabolic process	5.22E-03
62	GO:0006165: nucleoside diphosphate phosphorylation	5.22E-03
63	GO:0006228: UTP biosynthetic process	5.22E-03
64	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.22E-03
65	GO:0009117: nucleotide metabolic process	5.22E-03
66	GO:0019375: galactolipid biosynthetic process	5.22E-03
67	GO:0006183: GTP biosynthetic process	5.22E-03
68	GO:0006241: CTP biosynthetic process	5.22E-03
69	GO:0045038: protein import into chloroplast thylakoid membrane	5.22E-03
70	GO:0019684: photosynthesis, light reaction	5.30E-03
71	GO:0006098: pentose-phosphate shunt	5.41E-03
72	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.02E-03
73	GO:0044267: cellular protein metabolic process	6.02E-03
74	GO:0010155: regulation of proton transport	6.02E-03
75	GO:0010267: production of ta-siRNAs involved in RNA interference	6.02E-03
76	GO:0019748: secondary metabolic process	7.12E-03
77	GO:0010468: regulation of gene expression	7.12E-03
78	GO:0006184: obsolete GTP catabolic process	8.18E-03
79	GO:0043085: positive regulation of catalytic activity	8.29E-03
80	GO:0048229: gametophyte development	9.23E-03
81	GO:0000105: histidine biosynthetic process	9.23E-03
82	GO:0009097: isoleucine biosynthetic process	9.23E-03
83	GO:0006749: glutathione metabolic process	9.23E-03
84	GO:0006783: heme biosynthetic process	9.23E-03
85	GO:0045454: cell redox homeostasis	9.88E-03
86	GO:0010583: response to cyclopentenone	1.15E-02
87	GO:0006189: 'de novo' IMP biosynthetic process	1.15E-02
88	GO:0034660: ncRNA metabolic process	1.15E-02
89	GO:0009106: lipoate metabolic process	1.15E-02
90	GO:0006032: chitin catabolic process	1.15E-02
91	GO:0006766: vitamin metabolic process	1.15E-02
92	GO:0009411: response to UV	1.15E-02
93	GO:0009814: defense response, incompatible interaction	1.15E-02
94	GO:0009108: coenzyme biosynthetic process	1.15E-02
95	GO:0006520: cellular amino acid metabolic process	1.24E-02
96	GO:0009902: chloroplast relocation	1.24E-02
97	GO:0006396: RNA processing	1.34E-02
98	GO:0016114: terpenoid biosynthetic process	1.40E-02
99	GO:0010053: root epidermal cell differentiation	1.40E-02
100	GO:0051604: protein maturation	1.40E-02
101	GO:0006662: glycerol ether metabolic process	1.60E-02
102	GO:0009416: response to light stimulus	1.66E-02
103	GO:0009585: red, far-red light phototransduction	1.67E-02
104	GO:0019344: cysteine biosynthetic process	1.72E-02
105	GO:0009637: response to blue light	1.72E-02
106	GO:0009809: lignin biosynthetic process	1.95E-02
107	GO:0010114: response to red light	2.00E-02
108	GO:0009567: double fertilization forming a zygote and endosperm	2.25E-02
109	GO:0016556: mRNA modification	2.25E-02
110	GO:0010218: response to far red light	2.29E-02
111	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.56E-02
112	GO:0009723: response to ethylene	2.78E-02
113	GO:0009825: multidimensional cell growth	2.89E-02
114	GO:0016998: cell wall macromolecule catabolic process	2.89E-02
115	GO:0016042: lipid catabolic process	2.89E-02
116	GO:0031408: oxylipin biosynthetic process	3.23E-02
117	GO:0015996: chlorophyll catabolic process	3.59E-02
118	GO:0005982: starch metabolic process	3.59E-02
119	GO:0006636: unsaturated fatty acid biosynthetic process	3.59E-02
120	GO:0009630: gravitropism	3.96E-02
121	GO:0042545: cell wall modification	3.96E-02
122	GO:0006200: obsolete ATP catabolic process	4.10E-02
123	GO:0009409: response to cold	4.31E-02
124	GO:0030154: cell differentiation	4.35E-02
125	GO:0009657: plastid organization	4.35E-02
126	GO:0016036: cellular response to phosphate starvation	4.74E-02
127	GO:0048825: cotyledon development	4.74E-02
128	GO:0008219: cell death	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0003919: FMN adenylyltransferase activity	0.00E+00
2	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
3	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
4	GO:0042586: peptide deformylase activity	0.00E+00
5	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
6	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
7	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
8	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
9	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
10	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
11	GO:0008565: protein transporter activity	5.17E-06
12	GO:0004853: uroporphyrinogen decarboxylase activity	2.68E-05
13	GO:0051082: unfolded protein binding	4.73E-05
14	GO:0016817: hydrolase activity, acting on acid anhydrides	5.24E-04
15	GO:0004525: ribonuclease III activity	7.49E-04
16	GO:0004362: glutathione-disulfide reductase activity	9.28E-04
17	GO:0004585: ornithine carbamoyltransferase activity	9.28E-04
18	GO:0008146: sulfotransferase activity	9.28E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	9.28E-04
20	GO:0004823: leucine-tRNA ligase activity	9.28E-04
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.28E-04
22	GO:0004794: L-threonine ammonia-lyase activity	9.28E-04
23	GO:0031072: heat shock protein binding	1.07E-03
24	GO:0016630: protochlorophyllide reductase activity	2.10E-03
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.10E-03
26	GO:0047134: protein-disulfide reductase activity	2.10E-03
27	GO:0004462: lactoylglutathione lyase activity	2.10E-03
28	GO:0005496: steroid binding	2.10E-03
29	GO:0003959: NADPH dehydrogenase activity	3.53E-03
30	GO:0016743: carboxyl- or carbamoyltransferase activity	3.53E-03
31	GO:0000774: adenyl-nucleotide exchange factor activity	3.53E-03
32	GO:0016831: carboxy-lyase activity	4.65E-03
33	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	5.22E-03
34	GO:0070569: uridylyltransferase activity	5.22E-03
35	GO:0004765: shikimate kinase activity	5.22E-03
36	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	5.22E-03
37	GO:0004550: nucleoside diphosphate kinase activity	5.22E-03
38	GO:0005525: GTP binding	6.91E-03
39	GO:0016868: intramolecular transferase activity, phosphotransferases	7.12E-03
40	GO:0008173: RNA methyltransferase activity	9.23E-03
41	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.15E-02
42	GO:0004568: chitinase activity	1.15E-02
43	GO:0015035: protein disulfide oxidoreductase activity	1.20E-02
44	GO:0000287: magnesium ion binding	1.28E-02
45	GO:0008047: enzyme activator activity	1.40E-02
46	GO:0043022: ribosome binding	1.40E-02
47	GO:0004575: sucrose alpha-glucosidase activity	1.40E-02
48	GO:0051087: chaperone binding	1.40E-02
49	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.95E-02
50	GO:0046914: transition metal ion binding	2.25E-02
51	GO:0005216: ion channel activity	3.96E-02
52	GO:0003924: GTPase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0031361: integral component of thylakoid membrane	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0042646: plastid nucleoid	0.00E+00
4	GO:0055035: plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	1.77E-21
6	GO:0009570: chloroplast stroma	3.29E-10
7	GO:0009535: chloroplast thylakoid membrane	6.35E-10
8	GO:0009941: chloroplast envelope	9.27E-09
9	GO:0009579: thylakoid	2.41E-06
10	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	9.28E-04
11	GO:0009526: plastid envelope	9.28E-04
12	GO:0005960: glycine cleavage complex	9.28E-04
13	GO:0044445: cytosolic part	9.28E-04
14	GO:0009532: plastid stroma	1.02E-03
15	GO:0009295: nucleoid	2.45E-03
16	GO:0010319: stromule	3.25E-03
17	GO:0031977: thylakoid lumen	3.57E-03
18	GO:0009534: chloroplast thylakoid	6.76E-03
19	GO:0009840: chloroplastic endopeptidase Clp complex	7.12E-03
20	GO:0019013: viral nucleocapsid	7.60E-03
21	GO:0009536: plastid	8.38E-03
22	GO:0019898: extrinsic component of membrane	9.23E-03
23	GO:0009706: chloroplast inner membrane	1.03E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.15E-02
25	GO:0005759: mitochondrial matrix	1.24E-02
26	GO:0009543: chloroplast thylakoid lumen	3.23E-02
27	GO:0005737: cytoplasm	3.62E-02