co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G172657

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0006233: dTDP biosynthetic process	0.00E+00
3	GO:0006268: DNA unwinding involved in DNA replication	0.00E+00
4	GO:0032465: regulation of cytokinesis	0.00E+00
5	GO:0006260: DNA replication	1.27E-07
6	GO:0007049: cell cycle	6.53E-07
7	GO:0043987: histone H3-S10 phosphorylation	4.63E-06
8	GO:0016572: histone phosphorylation	6.83E-06
9	GO:0006275: regulation of DNA replication	1.37E-05
10	GO:0010389: regulation of G2/M transition of mitotic cell cycle	2.84E-05
11	GO:0051301: cell division	1.11E-04
12	GO:0006281: DNA repair	1.44E-04
13	GO:0006084: acetyl-CoA metabolic process	1.69E-04
14	GO:0006270: DNA replication initiation	3.13E-04
15	GO:0006342: chromatin silencing	3.15E-04
16	GO:0010026: trichome differentiation	3.50E-04
17	GO:0042276: error-prone translesion synthesis	3.50E-04
18	GO:1990426: mitotic recombination-dependent replication fork processing	3.50E-04
19	GO:0031507: heterochromatin assembly	3.50E-04
20	GO:0010425: DNA methylation on cytosine within a CNG sequence	3.50E-04
21	GO:0007059: chromosome segregation	3.50E-04
22	GO:0009909: regulation of flower development	3.95E-04
23	GO:0051726: regulation of cell cycle	4.86E-04
24	GO:0006259: DNA metabolic process	5.03E-04
25	GO:0000911: cytokinesis by cell plate formation	6.48E-04
26	GO:0051567: histone H3-K9 methylation	7.08E-04
27	GO:0032508: DNA duplex unwinding	7.36E-04
28	GO:0010069: zygote asymmetric cytokinesis in embryo sac	8.22E-04
29	GO:0009186: deoxyribonucleoside diphosphate metabolic process	8.22E-04
30	GO:0009755: hormone-mediated signaling pathway	8.22E-04
31	GO:0045814: negative regulation of gene expression, epigenetic	8.22E-04
32	GO:0006306: DNA methylation	8.41E-04
33	GO:0008283: cell proliferation	1.15E-03
34	GO:0000724: double-strand break repair via homologous recombination	1.35E-03
35	GO:0009957: epidermal cell fate specification	1.39E-03
36	GO:0022904: respiratory electron transport chain	1.39E-03
37	GO:0006310: DNA recombination	1.53E-03
38	GO:0009966: regulation of signal transduction	1.53E-03
39	GO:0090116: C-5 methylation of cytosine	2.03E-03
40	GO:0006396: RNA processing	2.27E-03
41	GO:0006265: DNA topological change	2.72E-03
42	GO:0010082: regulation of root meristem growth	2.72E-03
43	GO:0032875: regulation of DNA endoreduplication	2.72E-03
44	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.82E-03
45	GO:0009933: meristem structural organization	3.08E-03
46	GO:0000226: microtubule cytoskeleton organization	3.37E-03
47	GO:0010087: phloem or xylem histogenesis	3.53E-03
48	GO:0009086: methionine biosynthetic process	4.31E-03
49	GO:0009934: regulation of meristem structural organization	4.40E-03
50	GO:0010583: response to cyclopentenone	4.40E-03
51	GO:0048449: floral organ formation	5.31E-03
52	GO:0010074: maintenance of meristem identity	5.31E-03
53	GO:0006302: double-strand break repair	6.30E-03
54	GO:0061025: membrane fusion	6.30E-03
55	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.30E-03
56	GO:0042127: regulation of cell proliferation	7.37E-03
57	GO:0009451: RNA modification	7.37E-03
58	GO:0048453: sepal formation	8.48E-03
59	GO:0010048: vernalization response	8.48E-03
60	GO:0006284: base-excision repair	8.48E-03
61	GO:0012501: programmed cell death	8.48E-03
62	GO:0016570: histone modification	8.48E-03
63	GO:0006974: cellular response to DNA damage stimulus	9.65E-03
64	GO:0051225: spindle assembly	9.65E-03
65	GO:0019915: lipid storage	9.65E-03
66	GO:0048451: petal formation	9.65E-03
67	GO:0007018: microtubule-based movement	9.74E-03
68	GO:0001522: pseudouridine synthesis	1.09E-02
69	GO:0016571: histone methylation	1.09E-02
70	GO:0009165: nucleotide biosynthetic process	1.09E-02
71	GO:0010332: response to gamma radiation	1.09E-02
72	GO:0048316: seed development	1.21E-02
73	GO:0006406: mRNA export from nucleus	1.21E-02
74	GO:0006289: nucleotide-excision repair	1.21E-02
75	GO:0009607: response to biotic stimulus	1.21E-02
76	GO:0009294: DNA mediated transformation	1.35E-02
77	GO:0010162: seed dormancy process	1.35E-02
78	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.35E-02
79	GO:0006952: defense response	1.37E-02
80	GO:0050826: response to freezing	1.49E-02
81	GO:0016126: sterol biosynthetic process	1.63E-02
82	GO:0008219: cell death	1.77E-02
83	GO:0044267: cellular protein metabolic process	1.77E-02
84	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.93E-02
85	GO:0010182: sugar mediated signaling pathway	2.08E-02
86	GO:0000278: mitotic cell cycle	2.24E-02
87	GO:0009553: embryo sac development	2.24E-02
88	GO:0009845: seed germination	2.58E-02
89	GO:0031047: gene silencing by RNA	2.76E-02
90	GO:0006334: nucleosome assembly	3.10E-02
91	GO:0006397: mRNA processing	3.49E-02
92	GO:0016579: protein deubiquitination	3.49E-02
93	GO:0048366: leaf development	3.69E-02
94	GO:0009790: embryo development	3.89E-02
95	GO:0009640: photomorphogenesis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008409: 5'-3' exonuclease activity	0.00E+00
2	GO:0004798: thymidylate kinase activity	0.00E+00
3	GO:0035175: histone kinase activity (H3-S10 specific)	4.63E-06
4	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	1.69E-05
5	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.50E-04
6	GO:0017108: 5'-flap endonuclease activity	3.50E-04
7	GO:0000150: recombinase activity	3.50E-04
8	GO:0003916: DNA topoisomerase activity	3.50E-04
9	GO:0030337: DNA polymerase processivity factor activity	3.50E-04
10	GO:0003678: DNA helicase activity	5.03E-04
11	GO:0003684: damaged DNA binding	5.03E-04
12	GO:0070628: proteasome binding	1.39E-03
13	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.03E-03
14	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.03E-03
15	GO:0008017: microtubule binding	2.52E-03
16	GO:0008536: Ran GTPase binding	3.53E-03
17	GO:0043130: ubiquitin binding	5.31E-03
18	GO:0008094: DNA-dependent ATPase activity	5.31E-03
19	GO:0009982: pseudouridine synthase activity	7.37E-03
20	GO:0046914: transition metal ion binding	8.48E-03
21	GO:0004518: nuclease activity	8.48E-03
22	GO:0005484: SNAP receptor activity	8.48E-03
23	GO:0003697: single-stranded DNA binding	9.65E-03
24	GO:0003690: double-stranded DNA binding	9.65E-03
25	GO:0003777: microtubule motor activity	9.74E-03
26	GO:0004519: endonuclease activity	1.09E-02
27	GO:0004527: exonuclease activity	1.35E-02
28	GO:0003677: DNA binding	1.37E-02
29	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.49E-02
30	GO:0019901: protein kinase binding	1.49E-02
31	GO:0005524: ATP binding	1.88E-02
32	GO:0008565: protein transporter activity	2.24E-02
33	GO:0000166: nucleotide binding	2.53E-02
34	GO:0051082: unfolded protein binding	2.73E-02
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.49E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0033186: CAF-1 complex	0.00E+00
3	GO:0005971: ribonucleoside-diphosphate reductase complex	1.69E-05
4	GO:0042555: MCM complex	3.15E-04
5	GO:0043626: PCNA complex	3.50E-04
6	GO:0000347: THO complex	3.50E-04
7	GO:0000775: chromosome, centromeric region	1.39E-03
8	GO:0005654: nucleoplasm	1.53E-03
9	GO:0005819: spindle	2.12E-03
10	GO:0012505: endomembrane system	4.40E-03
11	GO:0005875: microtubule associated complex	4.64E-03
12	GO:0016604: nuclear body	5.31E-03
13	GO:0016272: prefoldin complex	5.31E-03
14	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.31E-03
15	GO:0005730: nucleolus	6.84E-03
16	GO:0005871: kinesin complex	9.24E-03
17	GO:0005743: mitochondrial inner membrane	1.03E-02
18	GO:0005643: nuclear pore	1.35E-02
19	GO:0009504: cell plate	1.63E-02
20	GO:0031966: mitochondrial membrane	1.77E-02
21	GO:0005634: nucleus	1.83E-02
22	GO:0019013: viral nucleocapsid	2.08E-02
23	GO:0005874: microtubule	2.47E-02
24	GO:0005635: nuclear envelope	2.58E-02
25	GO:0009524: phragmoplast	3.49E-02
26	GO:0005694: chromosome	3.81E-02