co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G171444

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901259: chloroplast rRNA processing	0.00E+00
2	GO:0010028: xanthophyll cycle	0.00E+00
3	GO:0035436: triose phosphate transmembrane transport	0.00E+00
4	GO:0090342: regulation of cell aging	0.00E+00
5	GO:0015714: phosphoenolpyruvate transport	0.00E+00
6	GO:0032544: plastid translation	0.00E+00
7	GO:0042372: phylloquinone biosynthetic process	0.00E+00
8	GO:0071486: cellular response to high light intensity	0.00E+00
9	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
10	GO:0051188: cofactor biosynthetic process	0.00E+00
11	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
12	GO:0043043: peptide biosynthetic process	0.00E+00
13	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
15	GO:0042821: pyridoxal biosynthetic process	0.00E+00
16	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
17	GO:0009234: menaquinone biosynthetic process	0.00E+00
18	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
19	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.02E-23
21	GO:0010027: thylakoid membrane organization	1.21E-21
22	GO:0010207: photosystem II assembly	8.40E-16
23	GO:0015995: chlorophyll biosynthetic process	8.97E-13
24	GO:0006098: pentose-phosphate shunt	2.55E-12
25	GO:0006364: rRNA processing	1.27E-11
26	GO:0006412: translation	1.16E-10
27	GO:0009902: chloroplast relocation	8.90E-10
28	GO:0042793: transcription from plastid promoter	2.93E-09
29	GO:0016226: iron-sulfur cluster assembly	1.30E-08
30	GO:0015979: photosynthesis	1.39E-08
31	GO:0006766: vitamin metabolic process	3.07E-08
32	GO:0009108: coenzyme biosynthetic process	3.07E-08
33	GO:0009106: lipoate metabolic process	3.07E-08
34	GO:0009658: chloroplast organization	3.32E-08
35	GO:0006546: glycine catabolic process	3.64E-08
36	GO:0045036: protein targeting to chloroplast	7.05E-08
37	GO:0006655: phosphatidylglycerol biosynthetic process	1.28E-07
38	GO:0006636: unsaturated fatty acid biosynthetic process	2.20E-07
39	GO:0019748: secondary metabolic process	3.00E-07
40	GO:0000096: sulfur amino acid metabolic process	3.00E-07
41	GO:0016117: carotenoid biosynthetic process	1.73E-06
42	GO:0006733: oxidoreduction coenzyme metabolic process	2.25E-06
43	GO:0009117: nucleotide metabolic process	1.02E-05
44	GO:0016556: mRNA modification	2.82E-05
45	GO:0035304: regulation of protein dephosphorylation	3.44E-05
46	GO:0009773: photosynthetic electron transport in photosystem I	3.44E-05
47	GO:0009695: jasmonic acid biosynthetic process	4.51E-05
48	GO:0006418: tRNA aminoacylation for protein translation	7.72E-05
49	GO:0010236: plastoquinone biosynthetic process	7.87E-05
50	GO:0044272: sulfur compound biosynthetic process	7.87E-05
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.87E-05
52	GO:0009767: photosynthetic electron transport chain	8.77E-05
53	GO:0045893: positive regulation of transcription, DNA-templated	9.17E-05
54	GO:0006399: tRNA metabolic process	1.69E-04
55	GO:0019684: photosynthesis, light reaction	2.04E-04
56	GO:0030154: cell differentiation	2.04E-04
57	GO:0019344: cysteine biosynthetic process	2.35E-04
58	GO:0043085: positive regulation of catalytic activity	2.47E-04
59	GO:0009072: aromatic amino acid family metabolic process	2.55E-04
60	GO:0010103: stomatal complex morphogenesis	3.20E-04
61	GO:0010114: response to red light	3.22E-04
62	GO:0006354: DNA-templated transcription, elongation	4.90E-04
63	GO:0045038: protein import into chloroplast thylakoid membrane	5.10E-04
64	GO:0019216: regulation of lipid metabolic process	5.10E-04
65	GO:0006779: porphyrin-containing compound biosynthetic process	6.44E-04
66	GO:0070838: divalent metal ion transport	8.64E-04
67	GO:0008652: cellular amino acid biosynthetic process	9.90E-04
68	GO:0009073: aromatic amino acid family biosynthetic process	1.38E-03
69	GO:0009637: response to blue light	1.56E-03
70	GO:0009768: photosynthesis, light harvesting in photosystem I	1.71E-03
71	GO:0009069: serine family amino acid metabolic process	1.71E-03
72	GO:0019253: reductive pentose-phosphate cycle	1.71E-03
73	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.71E-03
74	GO:0019676: ammonia assimilation cycle	1.71E-03
75	GO:0006430: lysyl-tRNA aminoacylation	1.71E-03
76	GO:0009443: pyridoxal 5'-phosphate salvage	1.71E-03
77	GO:0008361: regulation of cell size	1.71E-03
78	GO:0006434: seryl-tRNA aminoacylation	1.71E-03
79	GO:0016050: vesicle organization	1.71E-03
80	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.71E-03
81	GO:0006573: valine metabolic process	1.71E-03
82	GO:0006433: prolyl-tRNA aminoacylation	1.71E-03
83	GO:0032543: mitochondrial translation	1.71E-03
84	GO:0019761: glucosinolate biosynthetic process	1.75E-03
85	GO:0030003: cellular cation homeostasis	1.84E-03
86	GO:0010206: photosystem II repair	1.84E-03
87	GO:0034660: ncRNA metabolic process	1.84E-03
88	GO:0010155: regulation of proton transport	2.15E-03
89	GO:0010218: response to far red light	2.41E-03
90	GO:0048481: plant ovule development	2.67E-03
91	GO:0000023: maltose metabolic process	2.67E-03
92	GO:0015977: carbon fixation	3.16E-03
93	GO:0006432: phenylalanyl-tRNA aminoacylation	3.86E-03
94	GO:0010109: regulation of photosynthesis	3.86E-03
95	GO:0048653: anther development	3.86E-03
96	GO:0019464: glycine decarboxylation via glycine cleavage system	3.86E-03
97	GO:0042742: defense response to bacterium	4.74E-03
98	GO:0010228: vegetative to reproductive phase transition of meristem	5.15E-03
99	GO:0009765: photosynthesis, light harvesting	6.01E-03
100	GO:0034599: cellular response to oxidative stress	6.56E-03
101	GO:0007186: G-protein coupled receptor signaling pathway	6.56E-03
102	GO:0016024: CDP-diacylglycerol biosynthetic process	6.56E-03
103	GO:0009965: leaf morphogenesis	6.57E-03
104	GO:0009735: response to cytokinin	6.90E-03
105	GO:0031408: oxylipin biosynthetic process	8.46E-03
106	GO:0007389: pattern specification process	9.73E-03
107	GO:0009833: plant-type primary cell wall biogenesis	9.73E-03
108	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.73E-03
109	GO:0051205: protein insertion into membrane	9.73E-03
110	GO:0045037: protein import into chloroplast stroma	9.73E-03
111	GO:0006353: DNA-templated transcription, termination	9.73E-03
112	GO:0042545: cell wall modification	1.14E-02
113	GO:0006631: fatty acid metabolic process	1.30E-02
114	GO:0007568: aging	1.33E-02
115	GO:0015994: chlorophyll metabolic process	1.33E-02
116	GO:0010189: vitamin E biosynthetic process	1.33E-02
117	GO:0006796: phosphate-containing compound metabolic process	1.33E-02
118	GO:0006569: tryptophan catabolic process	1.33E-02
119	GO:0009088: threonine biosynthetic process	1.33E-02
120	GO:0060416: response to growth hormone	1.33E-02
121	GO:0009772: photosynthetic electron transport in photosystem II	1.33E-02
122	GO:0009813: flavonoid biosynthetic process	1.33E-02
123	GO:0009416: response to light stimulus	1.40E-02
124	GO:0009793: embryo development ending in seed dormancy	1.43E-02
125	GO:0009409: response to cold	1.44E-02
126	GO:0018298: protein-chromophore linkage	1.48E-02
127	GO:0019252: starch biosynthetic process	1.49E-02
128	GO:0006414: translational elongation	1.68E-02
129	GO:0009913: epidermal cell differentiation	1.73E-02
130	GO:0007005: mitochondrion organization	1.73E-02
131	GO:0006542: glutamine biosynthetic process	1.73E-02
132	GO:0000105: histidine biosynthetic process	1.73E-02
133	GO:0046777: protein autophosphorylation	1.86E-02
134	GO:0009704: de-etiolation	2.17E-02
135	GO:0009814: defense response, incompatible interaction	2.17E-02
136	GO:0009411: response to UV	2.17E-02
137	GO:0033014: tetrapyrrole biosynthetic process	2.17E-02
138	GO:0006801: superoxide metabolic process	2.17E-02
139	GO:0009926: auxin polar transport	2.17E-02
140	GO:0010205: photoinhibition	2.17E-02
141	GO:0080167: response to karrikin	2.32E-02
142	GO:0022900: electron transport chain	2.40E-02
143	GO:0043039: tRNA aminoacylation	2.64E-02
144	GO:0030245: cellulose catabolic process	2.64E-02
145	GO:0008295: spermidine biosynthetic process	2.64E-02
146	GO:0009853: photorespiration	2.78E-02
147	GO:0000413: protein peptidyl-prolyl isomerization	3.04E-02
148	GO:0006184: obsolete GTP catabolic process	3.12E-02
149	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.14E-02
150	GO:0040007: growth	3.14E-02
151	GO:0010015: root morphogenesis	3.14E-02
152	GO:0048868: pollen tube development	3.14E-02
153	GO:0010466: negative regulation of peptidase activity	3.68E-02
154	GO:0009684: indoleacetic acid biosynthetic process	3.68E-02
155	GO:0009407: toxin catabolic process	3.68E-02
156	GO:0009832: plant-type cell wall biogenesis	3.68E-02
157	GO:0045454: cell redox homeostasis	3.73E-02
158	GO:0006662: glycerol ether metabolic process	3.89E-02
159	GO:0048527: lateral root development	4.24E-02
160	GO:0009697: salicylic acid biosynthetic process	4.24E-02
161	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
2	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
3	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
4	GO:0031409: pigment binding	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
7	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
8	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
9	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
10	GO:0005504: fatty acid binding	0.00E+00
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
12	GO:0045550: geranylgeranyl reductase activity	0.00E+00
13	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
14	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
15	GO:0004802: transketolase activity	0.00E+00
16	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
17	GO:0004399: histidinol dehydrogenase activity	0.00E+00
18	GO:0003735: structural constituent of ribosome	1.87E-09
19	GO:0019843: rRNA binding	9.17E-05
20	GO:0004812: aminoacyl-tRNA ligase activity	1.07E-04
21	GO:0004765: shikimate kinase activity	5.10E-04
22	GO:0016984: ribulose-bisphosphate carboxylase activity	5.10E-04
23	GO:0016209: antioxidant activity	5.10E-04
24	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.71E-03
25	GO:0004418: hydroxymethylbilane synthase activity	1.71E-03
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.71E-03
27	GO:0016851: magnesium chelatase activity	1.71E-03
28	GO:0004828: serine-tRNA ligase activity	1.71E-03
29	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.71E-03
30	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.71E-03
31	GO:0004831: tyrosine-tRNA ligase activity	1.71E-03
32	GO:0070402: NADPH binding	1.71E-03
33	GO:0004795: threonine synthase activity	1.71E-03
34	GO:0004824: lysine-tRNA ligase activity	1.71E-03
35	GO:0034256: chlorophyll(ide) b reductase activity	1.71E-03
36	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.71E-03
37	GO:0004827: proline-tRNA ligase activity	1.71E-03
38	GO:0016168: chlorophyll binding	2.15E-03
39	GO:0051537: 2 iron, 2 sulfur cluster binding	3.34E-03
40	GO:0045485: omega-6 fatty acid desaturase activity	3.86E-03
41	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	3.86E-03
42	GO:0045430: chalcone isomerase activity	3.86E-03
43	GO:0004605: phosphatidate cytidylyltransferase activity	3.86E-03
44	GO:0051920: peroxiredoxin activity	3.86E-03
45	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.86E-03
46	GO:0004826: phenylalanine-tRNA ligase activity	3.86E-03
47	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.86E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.02E-03
49	GO:0000049: tRNA binding	4.02E-03
50	GO:0033897: ribonuclease T2 activity	6.56E-03
51	GO:0016872: intramolecular lyase activity	6.56E-03
52	GO:0009055: electron carrier activity	8.24E-03
53	GO:0015035: protein disulfide oxidoreductase activity	9.50E-03
54	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.73E-03
55	GO:0003913: DNA photolyase activity	9.73E-03
56	GO:0071949: FAD binding	9.73E-03
57	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	9.73E-03
58	GO:0070569: uridylyltransferase activity	9.73E-03
59	GO:0004659: prenyltransferase activity	9.73E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	9.73E-03
61	GO:0003723: RNA binding	1.03E-02
62	GO:0003746: translation elongation factor activity	1.12E-02
63	GO:0016987: sigma factor activity	1.33E-02
64	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.33E-02
65	GO:0004356: glutamate-ammonia ligase activity	1.73E-02
66	GO:0008810: cellulase activity	2.17E-02
67	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.17E-02
68	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.64E-02
69	GO:0004784: superoxide dismutase activity	2.64E-02
70	GO:0008312: 7S RNA binding	2.64E-02
71	GO:0043022: ribosome binding	2.64E-02
72	GO:0004427: inorganic diphosphatase activity	3.14E-02
73	GO:0042578: phosphoric ester hydrolase activity	3.14E-02
74	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.60E-02
75	GO:0030414: peptidase inhibitor activity	3.68E-02
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.68E-02
77	GO:0008236: serine-type peptidase activity	4.20E-02
78	GO:0051536: iron-sulfur cluster binding	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009507: chloroplast	3.84E-59
3	GO:0009570: chloroplast stroma	3.78E-43
4	GO:0009941: chloroplast envelope	1.14E-27
5	GO:0009535: chloroplast thylakoid membrane	4.88E-19
6	GO:0009579: thylakoid	1.87E-15
7	GO:0005840: ribosome	7.70E-13
8	GO:0009534: chloroplast thylakoid	4.38E-10
9	GO:0009543: chloroplast thylakoid lumen	1.28E-07
10	GO:0030529: intracellular ribonucleoprotein complex	1.56E-06
11	GO:0031977: thylakoid lumen	3.74E-06
12	GO:0009295: nucleoid	4.30E-05
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.82E-05
14	GO:0009840: chloroplastic endopeptidase Clp complex	8.64E-04
15	GO:0009523: photosystem II	1.21E-03
16	GO:0000311: plastid large ribosomal subunit	1.71E-03
17	GO:0009527: plastid outer membrane	1.71E-03
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.71E-03
19	GO:0005960: glycine cleavage complex	1.71E-03
20	GO:0009528: plastid inner membrane	1.71E-03
21	GO:0015935: small ribosomal subunit	2.18E-03
22	GO:0005622: intracellular	2.32E-03
23	GO:0009536: plastid	2.42E-03
24	GO:0009532: plastid stroma	2.44E-03
25	GO:0009522: photosystem I	2.89E-03
26	GO:0055028: cortical microtubule	6.56E-03
27	GO:0048046: apoplast	7.97E-03
28	GO:0042651: thylakoid membrane	8.46E-03
29	GO:0009538: photosystem I reaction center	9.73E-03
30	GO:0015934: large ribosomal subunit	1.02E-02
31	GO:0009508: plastid chromosome	1.33E-02
32	GO:0019013: viral nucleocapsid	1.86E-02
33	GO:0010287: plastoglobule	2.10E-02
34	GO:0048500: signal recognition particle	2.17E-02
35	GO:0010319: stromule	4.86E-02