co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G170137

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010028: xanthophyll cycle	0.00E+00
2	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
3	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
4	GO:0042550: photosystem I stabilization	0.00E+00
5	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
6	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
7	GO:0010207: photosystem II assembly	1.86E-13
8	GO:0010027: thylakoid membrane organization	1.38E-12
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.15E-12
10	GO:0043085: positive regulation of catalytic activity	8.97E-11
11	GO:0009773: photosynthetic electron transport in photosystem I	1.17E-10
12	GO:0006098: pentose-phosphate shunt	1.63E-10
13	GO:0015979: photosynthesis	2.75E-10
14	GO:0015995: chlorophyll biosynthetic process	1.45E-09
15	GO:0006364: rRNA processing	2.68E-09
16	GO:0016117: carotenoid biosynthetic process	2.99E-09
17	GO:0000023: maltose metabolic process	1.13E-08
18	GO:0019252: starch biosynthetic process	3.12E-08
19	GO:0009902: chloroplast relocation	1.33E-06
20	GO:0006636: unsaturated fatty acid biosynthetic process	2.93E-06
21	GO:0019761: glucosinolate biosynthetic process	3.91E-06
22	GO:0006766: vitamin metabolic process	5.27E-06
23	GO:0009108: coenzyme biosynthetic process	5.27E-06
24	GO:0010206: photosystem II repair	5.27E-06
25	GO:0009106: lipoate metabolic process	5.27E-06
26	GO:0006546: glycine catabolic process	4.38E-05
27	GO:0042793: transcription from plastid promoter	7.64E-05
28	GO:0019748: secondary metabolic process	1.20E-04
29	GO:0070838: divalent metal ion transport	1.20E-04
30	GO:0000096: sulfur amino acid metabolic process	1.20E-04
31	GO:0006569: tryptophan catabolic process	1.20E-04
32	GO:0009772: photosynthetic electron transport in photosystem II	1.20E-04
33	GO:0009657: plastid organization	1.49E-04
34	GO:0010155: regulation of proton transport	1.81E-04
35	GO:0010103: stomatal complex morphogenesis	2.16E-04
36	GO:0046777: protein autophosphorylation	2.56E-04
37	GO:0030003: cellular cation homeostasis	2.80E-04
38	GO:0034660: ncRNA metabolic process	2.80E-04
39	GO:0009695: jasmonic acid biosynthetic process	3.00E-04
40	GO:0016050: vesicle organization	4.80E-04
41	GO:0009072: aromatic amino acid family metabolic process	5.05E-04
42	GO:0009684: indoleacetic acid biosynthetic process	6.43E-04
43	GO:0016556: mRNA modification	8.00E-04
44	GO:0009637: response to blue light	8.04E-04
45	GO:0010114: response to red light	9.82E-04
46	GO:0006875: cellular metal ion homeostasis	1.12E-03
47	GO:0044272: sulfur compound biosynthetic process	1.12E-03
48	GO:0010218: response to far red light	1.18E-03
49	GO:0009767: photosynthetic electron transport chain	1.37E-03
50	GO:0080167: response to karrikin	1.42E-03
51	GO:0019760: glucosinolate metabolic process	1.88E-03
52	GO:0006733: oxidoreduction coenzyme metabolic process	1.88E-03
53	GO:0016024: CDP-diacylglycerol biosynthetic process	1.88E-03
54	GO:0030154: cell differentiation	2.09E-03
55	GO:0006014: D-ribose metabolic process	2.72E-03
56	GO:0010196: nonphotochemical quenching	2.72E-03
57	GO:0050821: protein stabilization	2.72E-03
58	GO:0016485: protein processing	2.72E-03
59	GO:0019216: regulation of lipid metabolic process	2.72E-03
60	GO:0009595: detection of biotic stimulus	2.72E-03
61	GO:0009117: nucleotide metabolic process	2.72E-03
62	GO:0045037: protein import into chloroplast stroma	2.72E-03
63	GO:0015986: ATP synthesis coupled proton transport	3.29E-03
64	GO:0015994: chlorophyll metabolic process	3.72E-03
65	GO:0070084: protein initiator methionine removal	3.72E-03
66	GO:0006796: phosphate-containing compound metabolic process	3.72E-03
67	GO:0060416: response to growth hormone	3.72E-03
68	GO:0009813: flavonoid biosynthetic process	3.72E-03
69	GO:0043900: regulation of multi-organism process	3.72E-03
70	GO:0034755: iron ion transmembrane transport	3.72E-03
71	GO:0006568: tryptophan metabolic process	4.81E-03
72	GO:0009913: epidermal cell differentiation	4.81E-03
73	GO:0000413: protein peptidyl-prolyl isomerization	4.86E-03
74	GO:0009704: de-etiolation	5.98E-03
75	GO:0009987: cellular process	5.98E-03
76	GO:0009411: response to UV	5.98E-03
77	GO:0009073: aromatic amino acid family biosynthetic process	6.23E-03
78	GO:0019344: cysteine biosynthetic process	6.74E-03
79	GO:0010310: regulation of hydrogen peroxide metabolic process	7.27E-03
80	GO:0005985: sucrose metabolic process	7.27E-03
81	GO:0016226: iron-sulfur cluster assembly	8.38E-03
82	GO:0015977: carbon fixation	8.62E-03
83	GO:0000162: tryptophan biosynthetic process	8.62E-03
84	GO:0009409: response to cold	8.68E-03
85	GO:0006006: glucose metabolic process	1.16E-02
86	GO:0048527: lateral root development	1.16E-02
87	GO:0009697: salicylic acid biosynthetic process	1.16E-02
88	GO:0006754: ATP biosynthetic process	1.16E-02
89	GO:0006354: DNA-templated transcription, elongation	1.16E-02
90	GO:0006814: sodium ion transport	1.16E-02
91	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.32E-02
92	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.32E-02
93	GO:0009765: photosynthesis, light harvesting	1.32E-02
94	GO:0008652: cellular amino acid biosynthetic process	1.37E-02
95	GO:0009644: response to high light intensity	1.45E-02
96	GO:0046854: phosphatidylinositol phosphorylation	1.49E-02
97	GO:0006655: phosphatidylglycerol biosynthetic process	1.66E-02
98	GO:0031408: oxylipin biosynthetic process	1.66E-02
99	GO:0009965: leaf morphogenesis	1.69E-02
100	GO:0006631: fatty acid metabolic process	2.23E-02
101	GO:0019684: photosynthesis, light reaction	2.23E-02
102	GO:0015992: proton transport	2.23E-02
103	GO:0045893: positive regulation of transcription, DNA-templated	2.24E-02
104	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.44E-02
105	GO:0018298: protein-chromophore linkage	2.44E-02
106	GO:0009966: regulation of signal transduction	2.44E-02
107	GO:0006612: protein targeting to membrane	2.65E-02
108	GO:0010200: response to chitin	2.65E-02
109	GO:0009416: response to light stimulus	2.77E-02
110	GO:0010363: regulation of plant-type hypersensitive response	2.86E-02
111	GO:0010224: response to UV-B	2.86E-02
112	GO:0035304: regulation of protein dephosphorylation	2.86E-02
113	GO:0009867: jasmonic acid mediated signaling pathway	3.08E-02
114	GO:0009817: defense response to fungus, incompatible interaction	3.08E-02
115	GO:0031348: negative regulation of defense response	3.08E-02
116	GO:0055114: oxidation-reduction process	3.55E-02
117	GO:0007017: microtubule-based process	3.55E-02
118	GO:0009853: photorespiration	3.79E-02
119	GO:0000165: MAPK cascade	4.03E-02
120	GO:0009735: response to cytokinin	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
5	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
6	GO:0004802: transketolase activity	0.00E+00
7	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.46E-07
10	GO:0016168: chlorophyll binding	1.81E-04
11	GO:0004618: phosphoglycerate kinase activity	4.80E-04
12	GO:0015088: copper uptake transmembrane transporter activity	4.80E-04
13	GO:0009055: electron carrier activity	8.80E-04
14	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.74E-04
15	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.12E-03
16	GO:0045430: chalcone isomerase activity	1.12E-03
17	GO:0004605: phosphatidate cytidylyltransferase activity	1.12E-03
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.12E-03
19	GO:0033897: ribonuclease T2 activity	1.88E-03
20	GO:0016872: intramolecular lyase activity	1.88E-03
21	GO:0004765: shikimate kinase activity	2.72E-03
22	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.72E-03
23	GO:0016984: ribulose-bisphosphate carboxylase activity	2.72E-03
24	GO:0004332: fructose-bisphosphate aldolase activity	2.72E-03
25	GO:0004747: ribokinase activity	2.72E-03
26	GO:0005381: iron ion transmembrane transporter activity	3.72E-03
27	GO:0070006: metalloaminopeptidase activity	3.72E-03
28	GO:0004834: tryptophan synthase activity	4.81E-03
29	GO:0008235: metalloexopeptidase activity	4.81E-03
30	GO:0004252: serine-type endopeptidase activity	5.02E-03
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.75E-03
32	GO:0004427: inorganic diphosphatase activity	8.62E-03
33	GO:0042578: phosphoric ester hydrolase activity	8.62E-03
34	GO:0008266: poly(U) RNA binding	8.62E-03
35	GO:0004177: aminopeptidase activity	1.01E-02
36	GO:0048037: cofactor binding	1.32E-02
37	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.85E-02
38	GO:0015035: protein disulfide oxidoreductase activity	2.15E-02
39	GO:0008080: N-acetyltransferase activity	2.23E-02
40	GO:0051287: NAD binding	2.34E-02
41	GO:0015297: antiporter activity	2.86E-02
42	GO:0051537: 2 iron, 2 sulfur cluster binding	3.08E-02
43	GO:0051539: 4 iron, 4 sulfur cluster binding	4.29E-02
44	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.80E-02
45	GO:0004497: monooxygenase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	7.62E-28
4	GO:0009535: chloroplast thylakoid membrane	2.09E-19
5	GO:0009579: thylakoid	1.01E-15
6	GO:0009941: chloroplast envelope	1.70E-14
7	GO:0009534: chloroplast thylakoid	2.25E-14
8	GO:0009543: chloroplast thylakoid lumen	2.82E-14
9	GO:0031977: thylakoid lumen	3.77E-12
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.72E-11
11	GO:0009570: chloroplast stroma	2.50E-09
12	GO:0009523: photosystem II	4.85E-05
13	GO:0009508: plastid chromosome	1.20E-04
14	GO:0019898: extrinsic component of membrane	1.91E-04
15	GO:0009522: photosystem I	2.56E-04
16	GO:0009654: photosystem II oxygen evolving complex	2.80E-04
17	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.80E-04
18	GO:0009517: PSII associated light-harvesting complex II	4.80E-04
19	GO:0009295: nucleoid	9.74E-04
20	GO:0010319: stromule	9.82E-04
21	GO:0055028: cortical microtubule	1.88E-03
22	GO:0009538: photosystem I reaction center	2.72E-03
23	GO:0048046: apoplast	3.15E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	5.98E-03
25	GO:0010287: plastoglobule	1.37E-02
26	GO:0042651: thylakoid membrane	1.66E-02
27	GO:0009706: chloroplast inner membrane	3.55E-02