co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G169458

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010157: response to chlorate	0.00E+00
2	GO:0090391: granum assembly	0.00E+00
3	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
4	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
5	GO:0010117: photoprotection	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:0009658: chloroplast organization	8.91E-08
8	GO:0006457: protein folding	2.20E-06
9	GO:1901671: positive regulation of superoxide dismutase activity	1.58E-05
10	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.51E-05
11	GO:0045037: protein import into chloroplast stroma	1.21E-04
12	GO:0006353: DNA-templated transcription, termination	1.21E-04
13	GO:0033014: tetrapyrrole biosynthetic process	4.84E-04
14	GO:0010206: photosystem II repair	4.84E-04
15	GO:0019538: protein metabolic process	4.84E-04
16	GO:0051512: positive regulation of unidimensional cell growth	6.90E-04
17	GO:0010587: miRNA catabolic process	6.90E-04
18	GO:0009968: negative regulation of signal transduction	6.90E-04
19	GO:0010116: positive regulation of abscisic acid biosynthetic process	6.90E-04
20	GO:0006788: heme oxidation	6.90E-04
21	GO:0043157: response to cation stress	6.90E-04
22	GO:0032543: mitochondrial translation	6.90E-04
23	GO:0080141: regulation of jasmonic acid biosynthetic process	6.90E-04
24	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.90E-04
25	GO:0009902: chloroplast relocation	1.04E-03
26	GO:0010024: phytochromobilin biosynthetic process	1.59E-03
27	GO:0009102: biotin biosynthetic process	1.59E-03
28	GO:0010380: regulation of chlorophyll biosynthetic process	1.59E-03
29	GO:0051555: flavonol biosynthetic process	1.59E-03
30	GO:0019481: L-alanine catabolic process, by transamination	1.59E-03
31	GO:0010027: thylakoid membrane organization	1.89E-03
32	GO:0042793: transcription from plastid promoter	2.27E-03
33	GO:0000304: response to singlet oxygen	2.64E-03
34	GO:0006571: tyrosine biosynthetic process	2.64E-03
35	GO:0006450: regulation of translational fidelity	2.64E-03
36	GO:0009247: glycolipid biosynthetic process	2.64E-03
37	GO:0015867: ATP transport	2.64E-03
38	GO:0045038: protein import into chloroplast thylakoid membrane	3.91E-03
39	GO:0030259: lipid glycosylation	3.91E-03
40	GO:0006790: sulfur compound metabolic process	3.91E-03
41	GO:0019375: galactolipid biosynthetic process	3.91E-03
42	GO:0006401: RNA catabolic process	3.91E-03
43	GO:0009098: leucine biosynthetic process	3.91E-03
44	GO:0015995: chlorophyll biosynthetic process	3.95E-03
45	GO:0009813: flavonoid biosynthetic process	5.31E-03
46	GO:0010468: regulation of gene expression	5.31E-03
47	GO:0006364: rRNA processing	6.77E-03
48	GO:0031347: regulation of defense response	6.88E-03
49	GO:0006102: isocitrate metabolic process	6.88E-03
50	GO:0006749: glutathione metabolic process	6.88E-03
51	GO:0006189: 'de novo' IMP biosynthetic process	8.59E-03
52	GO:0032880: regulation of protein localization	8.59E-03
53	GO:0009704: de-etiolation	8.59E-03
54	GO:0009408: response to heat	9.00E-03
55	GO:0009416: response to light stimulus	9.74E-03
56	GO:0010099: regulation of photomorphogenesis	1.04E-02
57	GO:0006399: tRNA metabolic process	1.04E-02
58	GO:0009082: branched-chain amino acid biosynthetic process	1.04E-02
59	GO:0009628: response to abiotic stimulus	1.04E-02
60	GO:0019344: cysteine biosynthetic process	1.13E-02
61	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.24E-02
62	GO:0045087: innate immune response	1.24E-02
63	GO:0001666: response to hypoxia	1.24E-02
64	GO:0009407: toxin catabolic process	1.45E-02
65	GO:0000302: response to reactive oxygen species	1.45E-02
66	GO:0009834: plant-type secondary cell wall biogenesis	1.45E-02
67	GO:0006508: proteolysis	1.52E-02
68	GO:0006633: fatty acid biosynthetic process	1.56E-02
69	GO:0009612: response to mechanical stimulus	2.15E-02
70	GO:0046854: phosphatidylinositol phosphorylation	2.15E-02
71	GO:0045036: protein targeting to chloroplast	2.15E-02
72	GO:0019722: calcium-mediated signaling	2.15E-02
73	GO:0030244: cellulose biosynthetic process	2.18E-02
74	GO:0006655: phosphatidylglycerol biosynthetic process	2.40E-02
75	GO:0031408: oxylipin biosynthetic process	2.40E-02
76	GO:0048316: seed development	2.40E-02
77	GO:0030154: cell differentiation	3.22E-02
78	GO:0008610: lipid biosynthetic process	3.52E-02
79	GO:0044267: cellular protein metabolic process	3.52E-02
80	GO:0010155: regulation of proton transport	3.52E-02
81	GO:0009414: response to water deprivation	3.61E-02
82	GO:0045893: positive regulation of transcription, DNA-templated	3.76E-02
83	GO:0009627: systemic acquired resistance	3.82E-02
84	GO:0035304: regulation of protein dephosphorylation	4.14E-02
85	GO:0046777: protein autophosphorylation	4.14E-02
86	GO:0006950: response to stress	4.19E-02
87	GO:0071555: cell wall organization	4.45E-02
88	GO:0009695: jasmonic acid biosynthetic process	4.46E-02
89	GO:0009620: response to fungus	4.46E-02
90	GO:0009738: abscisic acid-activated signaling pathway	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0045431: flavonol synthase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
5	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
6	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
7	GO:0051087: chaperone binding	2.17E-05
8	GO:0004252: serine-type endopeptidase activity	3.68E-05
9	GO:0000774: adenyl-nucleotide exchange factor activity	5.53E-05
10	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.90E-04
11	GO:0035250: UDP-galactosyltransferase activity	6.90E-04
12	GO:0004362: glutathione-disulfide reductase activity	6.90E-04
13	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.90E-04
14	GO:0031177: phosphopantetheine binding	6.90E-04
15	GO:0008194: UDP-glycosyltransferase activity	6.90E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.90E-04
17	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.90E-04
18	GO:0042803: protein homodimerization activity	7.93E-04
19	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.10E-03
20	GO:0046914: transition metal ion binding	1.35E-03
21	GO:0008977: prephenate dehydrogenase (NAD+) activity	1.59E-03
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.59E-03
23	GO:0004665: prephenate dehydrogenase (NADP+) activity	1.59E-03
24	GO:0019204: obsolete nucleotide phosphatase activity	1.59E-03
25	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.59E-03
26	GO:0005347: ATP transmembrane transporter activity	1.59E-03
27	GO:0004392: heme oxygenase (decyclizing) activity	1.59E-03
28	GO:0016760: cellulose synthase (UDP-forming) activity	2.63E-03
29	GO:0004659: prenyltransferase activity	3.91E-03
30	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.91E-03
31	GO:0051287: NAD binding	7.87E-03
32	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	8.59E-03
33	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.08E-02
34	GO:0008266: poly(U) RNA binding	1.24E-02
35	GO:0005507: copper ion binding	1.46E-02
36	GO:0051082: unfolded protein binding	1.69E-02
37	GO:0048037: cofactor binding	1.90E-02
38	GO:0043531: ADP binding	1.90E-02
39	GO:0003690: double-stranded DNA binding	1.90E-02
40	GO:0005525: GTP binding	2.63E-02
41	GO:0004650: polygalacturonase activity	2.67E-02
42	GO:0016746: transferase activity, transferring acyl groups	3.13E-02
43	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.22E-02
44	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.44E-02
45	GO:0031072: heat shock protein binding	4.46E-02
46	GO:0016788: hydrolase activity, acting on ester bonds	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	3.82E-16
2	GO:0009507: chloroplast	7.49E-12
3	GO:0009570: chloroplast stroma	3.65E-10
4	GO:0009532: plastid stroma	3.12E-07
5	GO:0009707: chloroplast outer membrane	2.15E-04
6	GO:0009840: chloroplastic endopeptidase Clp complex	2.15E-04
7	GO:0009535: chloroplast thylakoid membrane	2.68E-04
8	GO:0019867: outer membrane	6.90E-04
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.90E-04
10	GO:0009526: plastid envelope	6.90E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	6.90E-04
12	GO:0009706: chloroplast inner membrane	8.04E-04
13	GO:0009536: plastid	1.01E-03
14	GO:0009533: chloroplast stromal thylakoid	1.59E-03
15	GO:0009579: thylakoid	2.39E-03
16	GO:0009534: chloroplast thylakoid	3.95E-03
17	GO:0005759: mitochondrial matrix	8.17E-03
18	GO:0042651: thylakoid membrane	2.40E-02