co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G169405

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035436: triose phosphate transmembrane transport	0.00E+00
2	GO:0015714: phosphoenolpyruvate transport	0.00E+00
3	GO:0051188: cofactor biosynthetic process	0.00E+00
4	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
5	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
6	GO:0042550: photosystem I stabilization	0.00E+00
7	GO:0009234: menaquinone biosynthetic process	0.00E+00
8	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
9	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
10	GO:0010028: xanthophyll cycle	0.00E+00
11	GO:0015979: photosynthesis	1.51E-16
12	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.84E-15
13	GO:0006098: pentose-phosphate shunt	4.90E-14
14	GO:0015995: chlorophyll biosynthetic process	2.04E-12
15	GO:0010207: photosystem II assembly	1.62E-11
16	GO:0016117: carotenoid biosynthetic process	5.23E-11
17	GO:0010027: thylakoid membrane organization	1.16E-10
18	GO:0006364: rRNA processing	1.03E-08
19	GO:0009773: photosynthetic electron transport in photosystem I	9.01E-08
20	GO:0009767: photosynthetic electron transport chain	3.04E-07
21	GO:0009902: chloroplast relocation	4.60E-07
22	GO:0006636: unsaturated fatty acid biosynthetic process	4.75E-07
23	GO:0000096: sulfur amino acid metabolic process	5.06E-06
24	GO:0042793: transcription from plastid promoter	1.17E-05
25	GO:0043085: positive regulation of catalytic activity	1.82E-05
26	GO:0009108: coenzyme biosynthetic process	2.09E-05
27	GO:0009106: lipoate metabolic process	2.09E-05
28	GO:0006766: vitamin metabolic process	2.09E-05
29	GO:0032544: plastid translation	2.30E-05
30	GO:0009416: response to light stimulus	8.12E-05
31	GO:0006546: glycine catabolic process	1.55E-04
32	GO:0080167: response to karrikin	1.89E-04
33	GO:0045036: protein targeting to chloroplast	2.03E-04
34	GO:0009637: response to blue light	2.98E-04
35	GO:0070838: divalent metal ion transport	3.00E-04
36	GO:0019748: secondary metabolic process	3.00E-04
37	GO:0019761: glucosinolate biosynthetic process	3.40E-04
38	GO:0010114: response to red light	3.85E-04
39	GO:0016226: iron-sulfur cluster assembly	4.35E-04
40	GO:0019684: photosynthesis, light reaction	4.80E-04
41	GO:0030154: cell differentiation	4.80E-04
42	GO:0010218: response to far red light	4.88E-04
43	GO:0010155: regulation of proton transport	5.73E-04
44	GO:0010206: photosystem II repair	6.61E-04
45	GO:0034660: ncRNA metabolic process	6.61E-04
46	GO:0030003: cellular cation homeostasis	6.61E-04
47	GO:0010103: stomatal complex morphogenesis	6.75E-04
48	GO:0006434: seryl-tRNA aminoacylation	8.53E-04
49	GO:0006573: valine metabolic process	8.53E-04
50	GO:0009768: photosynthesis, light harvesting in photosystem I	8.53E-04
51	GO:0009069: serine family amino acid metabolic process	8.53E-04
52	GO:0019676: ammonia assimilation cycle	8.53E-04
53	GO:0009695: jasmonic acid biosynthetic process	9.15E-04
54	GO:0006412: translation	1.06E-03
55	GO:0009072: aromatic amino acid family metabolic process	1.18E-03
56	GO:0022900: electron transport chain	1.18E-03
57	GO:0009697: salicylic acid biosynthetic process	1.82E-03
58	GO:0006354: DNA-templated transcription, elongation	1.82E-03
59	GO:0016556: mRNA modification	1.82E-03
60	GO:0009735: response to cytokinin	1.90E-03
61	GO:0010236: plastoquinone biosynthetic process	1.94E-03
62	GO:0042372: phylloquinone biosynthetic process	1.94E-03
63	GO:0044272: sulfur compound biosynthetic process	1.94E-03
64	GO:0006875: cellular metal ion homeostasis	1.94E-03
65	GO:0009073: aromatic amino acid family biosynthetic process	2.10E-03
66	GO:0009765: photosynthesis, light harvesting	2.19E-03
67	GO:0019344: cysteine biosynthetic process	2.31E-03
68	GO:0019252: starch biosynthetic process	3.16E-03
69	GO:0019760: glucosinolate metabolic process	3.24E-03
70	GO:0006733: oxidoreduction coenzyme metabolic process	3.24E-03
71	GO:0016024: CDP-diacylglycerol biosynthetic process	3.24E-03
72	GO:0051289: protein homotetramerization	3.24E-03
73	GO:0000023: maltose metabolic process	3.64E-03
74	GO:0009658: chloroplast organization	3.96E-03
75	GO:0009409: response to cold	4.04E-03
76	GO:0009657: plastid organization	4.71E-03
77	GO:0006014: D-ribose metabolic process	4.81E-03
78	GO:0050821: protein stabilization	4.81E-03
79	GO:0016485: protein processing	4.81E-03
80	GO:0019216: regulation of lipid metabolic process	4.81E-03
81	GO:0051260: protein homooligomerization	4.81E-03
82	GO:0009595: detection of biotic stimulus	4.81E-03
83	GO:0009117: nucleotide metabolic process	4.81E-03
84	GO:0045037: protein import into chloroplast stroma	4.81E-03
85	GO:0018298: protein-chromophore linkage	5.33E-03
86	GO:0009966: regulation of signal transduction	5.33E-03
87	GO:0008652: cellular amino acid biosynthetic process	5.79E-03
88	GO:0009644: response to high light intensity	6.22E-03
89	GO:0010189: vitamin E biosynthetic process	6.54E-03
90	GO:0006796: phosphate-containing compound metabolic process	6.54E-03
91	GO:0006569: tryptophan catabolic process	6.54E-03
92	GO:0009088: threonine biosynthetic process	6.54E-03
93	GO:0060416: response to growth hormone	6.54E-03
94	GO:0009772: photosynthetic electron transport in photosystem II	6.54E-03
95	GO:0050790: regulation of catalytic activity	6.54E-03
96	GO:0009813: flavonoid biosynthetic process	6.54E-03
97	GO:0043900: regulation of multi-organism process	6.54E-03
98	GO:0034755: iron ion transmembrane transport	6.54E-03
99	GO:0007568: aging	6.54E-03
100	GO:0015994: chlorophyll metabolic process	6.54E-03
101	GO:0046777: protein autophosphorylation	6.74E-03
102	GO:0015986: ATP synthesis coupled proton transport	7.51E-03
103	GO:0009817: defense response to fungus, incompatible interaction	7.51E-03
104	GO:0009965: leaf morphogenesis	7.61E-03
105	GO:0007005: mitochondrion organization	8.48E-03
106	GO:0006542: glutamine biosynthetic process	8.48E-03
107	GO:0006568: tryptophan metabolic process	8.48E-03
108	GO:0009814: defense response, incompatible interaction	1.06E-02
109	GO:0009704: de-etiolation	1.06E-02
110	GO:0009411: response to UV	1.06E-02
111	GO:0045893: positive regulation of transcription, DNA-templated	1.09E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.10E-02
113	GO:0010310: regulation of hydrogen peroxide metabolic process	1.29E-02
114	GO:0015977: carbon fixation	1.53E-02
115	GO:0000162: tryptophan biosynthetic process	1.53E-02
116	GO:0042742: defense response to bacterium	1.60E-02
117	GO:0009684: indoleacetic acid biosynthetic process	1.79E-02
118	GO:0006006: glucose metabolic process	2.07E-02
119	GO:0048527: lateral root development	2.07E-02
120	GO:0006814: sodium ion transport	2.07E-02
121	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.35E-02
122	GO:0009744: response to sucrose	2.62E-02
123	GO:0046854: phosphatidylinositol phosphorylation	2.66E-02
124	GO:0006655: phosphatidylglycerol biosynthetic process	2.97E-02
125	GO:0031408: oxylipin biosynthetic process	2.97E-02
126	GO:0006108: malate metabolic process	2.97E-02
127	GO:0007030: Golgi organization	3.30E-02
128	GO:0006096: glycolytic process	3.38E-02
129	GO:0009750: response to fructose	3.64E-02
130	GO:0006833: water transport	3.64E-02
131	GO:0006972: hyperosmotic response	3.64E-02
132	GO:0042545: cell wall modification	3.64E-02
133	GO:0009749: response to glucose	3.99E-02
134	GO:0006631: fatty acid metabolic process	3.99E-02
135	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.36E-02
136	GO:0006612: protein targeting to membrane	4.73E-02
137	GO:0010200: response to chitin	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0031409: pigment binding	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
4	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
7	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
8	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
9	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
10	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
11	GO:0004802: transketolase activity	0.00E+00
12	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
13	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
14	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
15	GO:0016168: chlorophyll binding	3.89E-05
16	GO:0051537: 2 iron, 2 sulfur cluster binding	7.78E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.15E-05
18	GO:0009055: electron carrier activity	1.39E-04
19	GO:0004828: serine-tRNA ligase activity	8.53E-04
20	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	8.53E-04
21	GO:0004795: threonine synthase activity	8.53E-04
22	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	8.53E-04
23	GO:0004618: phosphoglycerate kinase activity	8.53E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.53E-04
25	GO:0015088: copper uptake transmembrane transporter activity	8.53E-04
26	GO:0003735: structural constituent of ribosome	1.45E-03
27	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.94E-03
28	GO:0045430: chalcone isomerase activity	1.94E-03
29	GO:0004605: phosphatidate cytidylyltransferase activity	1.94E-03
30	GO:0051920: peroxiredoxin activity	1.94E-03
31	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.19E-03
32	GO:0051536: iron-sulfur cluster binding	2.45E-03
33	GO:0033897: ribonuclease T2 activity	3.24E-03
34	GO:0016872: intramolecular lyase activity	3.24E-03
35	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	3.24E-03
36	GO:0016209: antioxidant activity	4.81E-03
37	GO:0071949: FAD binding	4.81E-03
38	GO:0004332: fructose-bisphosphate aldolase activity	4.81E-03
39	GO:0004747: ribokinase activity	4.81E-03
40	GO:0004765: shikimate kinase activity	4.81E-03
41	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.81E-03
42	GO:0016984: ribulose-bisphosphate carboxylase activity	4.81E-03
43	GO:0004470: malic enzyme activity	6.54E-03
44	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.54E-03
45	GO:0030234: enzyme regulator activity	6.54E-03
46	GO:0005381: iron ion transmembrane transporter activity	6.54E-03
47	GO:0004356: glutamate-ammonia ligase activity	8.48E-03
48	GO:0004834: tryptophan synthase activity	8.48E-03
49	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.06E-02
50	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.06E-02
51	GO:0051287: NAD binding	1.15E-02
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.31E-02
53	GO:0004427: inorganic diphosphatase activity	1.53E-02
54	GO:0000049: tRNA binding	1.79E-02
55	GO:0046914: transition metal ion binding	2.07E-02
56	GO:0043531: ADP binding	2.35E-02
57	GO:0003690: double-stranded DNA binding	2.35E-02
58	GO:0042803: protein homodimerization activity	3.64E-02
59	GO:0004713: protein tyrosine kinase activity	3.64E-02
60	GO:0008080: N-acetyltransferase activity	3.99E-02
61	GO:0016779: nucleotidyltransferase activity	4.42E-02
62	GO:0015035: protein disulfide oxidoreductase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009782: photosystem I antenna complex	0.00E+00
4	GO:0009507: chloroplast	1.95E-35
5	GO:0009535: chloroplast thylakoid membrane	5.02E-24
6	GO:0009941: chloroplast envelope	5.75E-23
7	GO:0009579: thylakoid	1.25E-17
8	GO:0009570: chloroplast stroma	2.65E-17
9	GO:0009543: chloroplast thylakoid lumen	8.36E-13
10	GO:0009534: chloroplast thylakoid	6.18E-11
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.27E-10
12	GO:0031977: thylakoid lumen	4.71E-09
13	GO:0009522: photosystem I	2.86E-06
14	GO:0009523: photosystem II	1.64E-05
15	GO:0010287: plastoglobule	1.31E-04
16	GO:0009508: plastid chromosome	3.00E-04
17	GO:0019898: extrinsic component of membrane	4.63E-04
18	GO:0009654: photosystem II oxygen evolving complex	6.61E-04
19	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	8.53E-04
20	GO:0042406: extrinsic component of endoplasmic reticulum membrane	8.53E-04
21	GO:0005840: ribosome	1.08E-03
22	GO:0009533: chloroplast stromal thylakoid	1.94E-03
23	GO:0009295: nucleoid	2.19E-03
24	GO:0010319: stromule	2.78E-03
25	GO:0042651: thylakoid membrane	3.05E-03
26	GO:0009538: photosystem I reaction center	4.81E-03
27	GO:0048046: apoplast	5.46E-03
28	GO:0009706: chloroplast inner membrane	9.19E-03
29	GO:0030529: intracellular ribonucleoprotein complex	1.02E-02
30	GO:0016020: membrane	1.85E-02