co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G166767

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
2	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
3	GO:0043043: peptide biosynthetic process	0.00E+00
4	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
5	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
6	GO:0043953: protein transport by the Tat complex	0.00E+00
7	GO:0032543: mitochondrial translation	0.00E+00
8	GO:0046506: sulfolipid biosynthetic process	0.00E+00
9	GO:1901259: chloroplast rRNA processing	0.00E+00
10	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
11	GO:0090342: regulation of cell aging	0.00E+00
12	GO:0010027: thylakoid membrane organization	5.15E-12
13	GO:0006364: rRNA processing	8.57E-09
14	GO:0009902: chloroplast relocation	7.88E-08
15	GO:0010207: photosystem II assembly	3.56E-07
16	GO:0045038: protein import into chloroplast thylakoid membrane	6.49E-07
17	GO:0045036: protein targeting to chloroplast	2.37E-06
18	GO:0042793: transcription from plastid promoter	3.46E-06
19	GO:0016226: iron-sulfur cluster assembly	1.03E-05
20	GO:0006399: tRNA metabolic process	1.37E-05
21	GO:0009658: chloroplast organization	1.71E-05
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.58E-05
23	GO:0006184: obsolete GTP catabolic process	7.37E-05
24	GO:0009308: amine metabolic process	1.58E-04
25	GO:0006418: tRNA aminoacylation for protein translation	2.28E-04
26	GO:0009306: protein secretion	2.50E-04
27	GO:0006098: pentose-phosphate shunt	3.07E-04
28	GO:0035304: regulation of protein dephosphorylation	3.59E-04
29	GO:0009773: photosynthetic electron transport in photosystem I	3.59E-04
30	GO:0034660: ncRNA metabolic process	3.62E-04
31	GO:0006429: leucyl-tRNA aminoacylation	5.69E-04
32	GO:0006434: seryl-tRNA aminoacylation	5.69E-04
33	GO:0016050: vesicle organization	5.69E-04
34	GO:0006573: valine metabolic process	5.69E-04
35	GO:0009069: serine family amino acid metabolic process	5.69E-04
36	GO:0071722: detoxification of arsenic-containing substance	5.69E-04
37	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.48E-04
38	GO:0045893: positive regulation of transcription, DNA-templated	8.72E-04
39	GO:0006546: glycine catabolic process	1.24E-03
40	GO:0006779: porphyrin-containing compound biosynthetic process	1.24E-03
41	GO:0032544: plastid translation	1.32E-03
42	GO:0010253: UDP-rhamnose biosynthetic process	1.32E-03
43	GO:0042372: phylloquinone biosynthetic process	1.32E-03
44	GO:0010192: mucilage biosynthetic process	1.32E-03
45	GO:0009225: nucleotide-sugar metabolic process	1.32E-03
46	GO:0019464: glycine decarboxylation via glycine cleavage system	1.32E-03
47	GO:0006432: phenylalanyl-tRNA aminoacylation	1.32E-03
48	GO:0051555: flavonol biosynthetic process	1.32E-03
49	GO:0006655: phosphatidylglycerol biosynthetic process	1.74E-03
50	GO:0051607: defense response to virus	1.74E-03
51	GO:0006450: regulation of translational fidelity	2.20E-03
52	GO:0006733: oxidoreduction coenzyme metabolic process	2.20E-03
53	GO:0010731: protein glutathionylation	2.20E-03
54	GO:0045226: extracellular polysaccharide biosynthetic process	2.20E-03
55	GO:0016075: rRNA catabolic process	2.20E-03
56	GO:0009231: riboflavin biosynthetic process	2.20E-03
57	GO:0009247: glycolipid biosynthetic process	2.20E-03
58	GO:0006414: translational elongation	2.21E-03
59	GO:0042545: cell wall modification	2.31E-03
60	GO:0030154: cell differentiation	2.63E-03
61	GO:0015995: chlorophyll biosynthetic process	2.74E-03
62	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.97E-03
63	GO:0010267: production of ta-siRNAs involved in RNA interference	2.97E-03
64	GO:0010214: seed coat development	3.21E-03
65	GO:0006782: protoporphyrinogen IX biosynthetic process	3.21E-03
66	GO:0051205: protein insertion into membrane	3.21E-03
67	GO:0009117: nucleotide metabolic process	3.21E-03
68	GO:0019375: galactolipid biosynthetic process	3.21E-03
69	GO:0006200: obsolete ATP catabolic process	3.38E-03
70	GO:0000096: sulfur amino acid metabolic process	4.40E-03
71	GO:0010315: auxin efflux	4.40E-03
72	GO:0019748: secondary metabolic process	4.40E-03
73	GO:0007005: mitochondrion organization	5.67E-03
74	GO:0009108: coenzyme biosynthetic process	7.07E-03
75	GO:0010583: response to cyclopentenone	7.07E-03
76	GO:0009106: lipoate metabolic process	7.07E-03
77	GO:0006766: vitamin metabolic process	7.07E-03
78	GO:0006412: translation	7.71E-03
79	GO:0009073: aromatic amino acid family biosynthetic process	7.93E-03
80	GO:0019344: cysteine biosynthetic process	8.58E-03
81	GO:0043039: tRNA aminoacylation	8.59E-03
82	GO:0051604: protein maturation	8.59E-03
83	GO:0009407: toxin catabolic process	1.19E-02
84	GO:0048481: plant ovule development	1.22E-02
85	GO:0000023: maltose metabolic process	1.22E-02
86	GO:0006354: DNA-templated transcription, elongation	1.37E-02
87	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.56E-02
88	GO:0006974: cellular response to DNA damage stimulus	1.56E-02
89	GO:0010228: vegetative to reproductive phase transition of meristem	1.84E-02
90	GO:0008033: tRNA processing	1.97E-02
91	GO:0009965: leaf morphogenesis	2.15E-02
92	GO:0006636: unsaturated fatty acid biosynthetic process	2.19E-02
93	GO:0019684: photosynthesis, light reaction	2.65E-02
94	GO:0009657: plastid organization	2.65E-02
95	GO:0016036: cellular response to phosphate starvation	2.89E-02
96	GO:0006310: DNA recombination	2.89E-02
97	GO:0044237: cellular metabolic process	2.98E-02
98	GO:0006396: RNA processing	2.98E-02
99	GO:0010103: stomatal complex morphogenesis	3.14E-02
100	GO:0006352: DNA-templated transcription, initiation	3.14E-02
101	GO:0006139: nucleobase-containing compound metabolic process	3.39E-02
102	GO:0006807: nitrogen compound metabolic process	3.39E-02
103	GO:0019252: starch biosynthetic process	3.65E-02
104	GO:0009817: defense response to fungus, incompatible interaction	3.66E-02
105	GO:0009695: jasmonic acid biosynthetic process	3.66E-02
106	GO:0006869: lipid transport	3.66E-02
107	GO:0051258: protein polymerization	3.66E-02
108	GO:0006413: translational initiation	3.80E-02
109	GO:0009793: embryo development ending in seed dormancy	3.93E-02
110	GO:0007017: microtubule-based process	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
2	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
3	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
4	GO:0003919: FMN adenylyltransferase activity	0.00E+00
5	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
6	GO:0005048: signal sequence binding	0.00E+00
7	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
11	GO:0004812: aminoacyl-tRNA ligase activity	2.83E-04
12	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	3.62E-04
13	GO:0005525: GTP binding	3.76E-04
14	GO:0031072: heat shock protein binding	4.19E-04
15	GO:0008312: 7S RNA binding	4.94E-04
16	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	5.69E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.69E-04
18	GO:0010280: UDP-L-rhamnose synthase activity	5.69E-04
19	GO:0008146: sulfotransferase activity	5.69E-04
20	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.69E-04
21	GO:0004823: leucine-tRNA ligase activity	5.69E-04
22	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.69E-04
23	GO:0004828: serine-tRNA ligase activity	5.69E-04
24	GO:0003924: GTPase activity	1.09E-03
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.32E-03
26	GO:0004826: phenylalanine-tRNA ligase activity	1.32E-03
27	GO:0004462: lactoylglutathione lyase activity	1.32E-03
28	GO:0004853: uroporphyrinogen decarboxylase activity	1.32E-03
29	GO:0003746: translation elongation factor activity	1.47E-03
30	GO:0048038: quinone binding	2.01E-03
31	GO:0000774: adenyl-nucleotide exchange factor activity	2.20E-03
32	GO:0008460: dTDP-glucose 4,6-dehydratase activity	2.20E-03
33	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	2.20E-03
34	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	3.21E-03
35	GO:0070569: uridylyltransferase activity	3.21E-03
36	GO:0004765: shikimate kinase activity	3.21E-03
37	GO:0008565: protein transporter activity	4.21E-03
38	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.40E-03
39	GO:0016987: sigma factor activity	4.40E-03
40	GO:0008173: RNA methyltransferase activity	5.67E-03
41	GO:0016887: ATPase activity	6.48E-03
42	GO:0004525: ribonuclease III activity	7.07E-03
43	GO:0003723: RNA binding	7.67E-03
44	GO:0008236: serine-type peptidase activity	8.58E-03
45	GO:0051087: chaperone binding	8.59E-03
46	GO:0043022: ribosome binding	8.59E-03
47	GO:0051082: unfolded protein binding	1.19E-02
48	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.19E-02
49	GO:0000049: tRNA binding	1.19E-02
50	GO:0005216: ion channel activity	2.41E-02
51	GO:0016831: carboxy-lyase activity	2.41E-02
52	GO:0000166: nucleotide binding	2.44E-02
53	GO:0005200: structural constituent of cytoskeleton	3.14E-02
54	GO:0004252: serine-type endopeptidase activity	3.51E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	3.80E-02
56	GO:0004222: metalloendopeptidase activity	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	9.03E-22
4	GO:0009570: chloroplast stroma	3.33E-13
5	GO:0009535: chloroplast thylakoid membrane	4.03E-08
6	GO:0009941: chloroplast envelope	1.64E-05
7	GO:0009534: chloroplast thylakoid	3.52E-05
8	GO:0009295: nucleoid	6.41E-05
9	GO:0009840: chloroplastic endopeptidase Clp complex	1.58E-04
10	GO:0048500: signal recognition particle	3.62E-04
11	GO:0009532: plastid stroma	4.94E-04
12	GO:0009526: plastid envelope	5.69E-04
13	GO:0005960: glycine cleavage complex	5.69E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	5.69E-04
15	GO:0019013: viral nucleocapsid	3.78E-03
16	GO:0009508: plastid chromosome	4.40E-03
17	GO:0009579: thylakoid	5.28E-03
18	GO:0005840: ribosome	1.95E-02
19	GO:0042651: thylakoid membrane	1.97E-02
20	GO:0009536: plastid	2.61E-02
21	GO:0043234: protein complex	3.93E-02
22	GO:0009706: chloroplast inner membrane	4.21E-02
23	GO:0005759: mitochondrial matrix	4.78E-02